RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 OR5H2Q8NGV7 314 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 PLEKHJ1Q9NW61 149 aa11.79□□□□□ -0.52
VPS54-203ENST00000409558 D6RAR5 112 aa11.78□□□□□ -0.52
VPS54-203ENST00000409558 M0R135 149 aa11.78□□□□□ -0.52
VPS54-203ENST00000409558 CSTBP04080 98 aaKnown RBP11.78□□□□□ -0.52
VPS54-203ENST00000409558 NMBP08949 121 aa11.78□□□□□ -0.52
VPS54-203ENST00000409558 FOLR3P41439 243 aa11.78□□□□□ -0.52
VPS54-203ENST00000409558 SPICQ8N5J4 248 aa11.78□□□□□ -0.52
VPS54-203ENST00000409558 PNLDC1Q8NA58 520 aaKnown RBP11.78□□□□□ -0.52
VPS54-203ENST00000409558 PIGCQ92535 297 aa11.78□□□□□ -0.52
VPS54-203ENST00000409558 ZNF799Q96GE5 643 aa11.78□□□□□ -0.52
VPS54-203ENST00000409558 NXPH3O95157 252 aa11.78□□□□□ -0.52
VPS54-203ENST00000409558 PMS2P2O95744 297 aa11.78□□□□□ -0.52
VPS54-203ENST00000409558 MGMTP16455 207 aa11.78□□□□□ -0.52
VPS54-203ENST00000409558 DUSP1P28562 367 aa11.78□□□□□ -0.52
VPS54-203ENST00000409558 TMEM50BP56557 158 aa11.78□□□□□ -0.52
VPS54-203ENST00000409558 FAM166AQ6J272 317 aa11.78□□□□□ -0.52
VPS54-203ENST00000409558 TMEM65Q6PI78 240 aa11.78□□□□□ -0.52
VPS54-203ENST00000409558 INO80EQ8NBZ0 244 aaPredicted RBP11.78□□□□□ -0.52
VPS54-203ENST00000409558 PAQR8Q8TEZ7 354 aa11.78□□□□□ -0.52
VPS54-203ENST00000409558 MRPL13Q9BYD1 178 aaKnown RBP11.78□□□□□ -0.52
VPS54-203ENST00000409558 LPAR5Q9H1C0 372 aa11.78□□□□□ -0.52
VPS54-203ENST00000409558 MGAQ8IWI9 3026 aa11.78□□□□□ -0.52
VPS54-203ENST00000409558 TRAV14DV4A0A0A6YYC5 116 aa11.78□□□□□ -0.52
VPS54-203ENST00000409558 MEX3AA1L020 520 aaKnown RBP11.78□□□□□ -0.52
VPS54-203ENST00000409558 SSX5O60225 188 aa11.78□□□□□ -0.52
VPS54-203ENST00000409558 CDC14BO60729 498 aa11.78□□□□□ -0.52
VPS54-203ENST00000409558 P04436 131 aa11.78□□□□□ -0.52
VPS54-203ENST00000409558 GABRA1P14867 456 aa11.78□□□□□ -0.52
VPS54-203ENST00000409558 CPN1P15169 458 aa11.78□□□□□ -0.52
VPS54-203ENST00000409558 UBE2V2Q15819 145 aa11.78□□□□□ -0.52
VPS54-203ENST00000409558 CLLU1Q5K131 121 aa11.78□□□□□ -0.52
VPS54-203ENST00000409558 NUP210LQ5VU65 1888 aa11.78□□□□□ -0.52
VPS54-203ENST00000409558 TMEM229BQ8NBD8 167 aa11.78□□□□□ -0.52
VPS54-203ENST00000409558 PHB2Q99623 299 aa11.78□□□□□ -0.52
VPS54-203ENST00000409558 TGIF2Q9GZN2 237 aa11.78□□□□□ -0.52
VPS54-203ENST00000409558 CSAG2Q9Y5P2 127 aa11.78□□□□□ -0.52
VPS54-203ENST00000409558 hCG_1807616A0A1W2PRN6 198 aa11.77□□□□□ -0.52
VPS54-203ENST00000409558 SRSF10O75494 262 aaKnown RBP11.77□□□□□ -0.52
VPS54-203ENST00000409558 SERPINA5P05154 406 aa11.77□□□□□ -0.52
VPS54-203ENST00000409558 M6PRP20645 277 aa11.77□□□□□ -0.52
VPS54-203ENST00000409558 HTR5AP47898 357 aa11.77□□□□□ -0.52
VPS54-203ENST00000409558 PMS2CLQ68D20 193 aa11.77□□□□□ -0.52
VPS54-203ENST00000409558 SIGIRRQ6IA17 410 aa11.77□□□□□ -0.52
VPS54-203ENST00000409558 OR5AS1Q8N127 324 aa11.77□□□□□ -0.52
VPS54-203ENST00000409558 DEFB123Q8N688 67 aa11.77□□□□□ -0.52
VPS54-203ENST00000409558 TMEM185AQ8NFB2 350 aa11.77□□□□□ -0.52
VPS54-203ENST00000409558 FAAP24Q9BTP7 215 aa11.77□□□□□ -0.52
VPS54-203ENST00000409558 ADAT1Q9BUB4 502 aaKnown RBP11.77□□□□□ -0.52
VPS54-203ENST00000409558 PILRBQ9UKJ0 227 aa11.77□□□□□ -0.52
VPS54-203ENST00000409558 CEP192Q8TEP8 1941 aa11.77□□□□□ -0.52
VPS54-203ENST00000409558 CCDC187A0A096LP49 1063 aa11.77□□□□□ -0.53
VPS54-203ENST00000409558 TPD52L2O43399 206 aaKnown RBP11.77□□□□□ -0.53
VPS54-203ENST00000409558 ZNF735P0CB33 412 aa11.77□□□□□ -0.53
VPS54-203ENST00000409558 PTGS2P35354 604 aa11.77□□□□□ -0.53
VPS54-203ENST00000409558 CHRFAM7AQ494W8 412 aa11.77□□□□□ -0.53
VPS54-203ENST00000409558 ZNF660Q6AZW8 331 aaPredicted RBP11.77□□□□□ -0.53
VPS54-203ENST00000409558 PDZD9Q8IXQ8 264 aa11.77□□□□□ -0.53
VPS54-203ENST00000409558 NKAIN3Q8N8D7 197 aa11.77□□□□□ -0.53
VPS54-203ENST00000409558 NAT6Q93015 286 aa11.77□□□□□ -0.53
VPS54-203ENST00000409558 PRRT1Q99946 306 aa11.77□□□□□ -0.53
VPS54-203ENST00000409558 SESN1Q9Y6P5 492 aa11.77□□□□□ -0.53
VPS54-203ENST00000409558 SPTA1P02549 2419 aa11.77□□□□□ -0.53
VPS54-203ENST00000409558 TECTAO75443 2155 aa11.77□□□□□ -0.53
VPS54-203ENST00000409558 C9orf170A2RU37 121 aa11.77□□□□□ -0.53
VPS54-203ENST00000409558 AQP8O94778 261 aa11.77□□□□□ -0.53
VPS54-203ENST00000409558 ITGB2P05107 769 aa11.77□□□□□ -0.53
VPS54-203ENST00000409558 JMJD7P0C870 316 aa11.77□□□□□ -0.53
VPS54-203ENST00000409558 RRASP10301 218 aa11.77□□□□□ -0.53
VPS54-203ENST00000409558 MSR1P21757 451 aa11.77□□□□□ -0.53
VPS54-203ENST00000409558 SLC35A1P78382 337 aa11.77□□□□□ -0.53
VPS54-203ENST00000409558 PCK2Q16822 640 aa11.77□□□□□ -0.53
VPS54-203ENST00000409558 FDX2Q6P4F2 183 aa11.77□□□□□ -0.53
VPS54-203ENST00000409558 PCNX1Q96RV3 2341 aa11.77□□□□□ -0.53
VPS54-203ENST00000409558 TEX13DA0A0J9YY54 714 aaPredicted RBP11.77□□□□□ -0.53
VPS54-203ENST00000409558 DHHO43323 396 aa11.77□□□□□ -0.53
VPS54-203ENST00000409558 OPN5Q6U736 354 aa11.77□□□□□ -0.53
VPS54-203ENST00000409558 OR5T2Q8NGG2 359 aa11.77□□□□□ -0.53
VPS54-203ENST00000409558 SLX1AQ9BQ83 275 aa11.77□□□□□ -0.53
VPS54-203ENST00000409558 OR10A2Q9H208 303 aa11.77□□□□□ -0.53
VPS54-203ENST00000409558 CALHM2Q9HA72 323 aa11.77□□□□□ -0.53
VPS54-203ENST00000409558 NPTNQ9Y639 398 aa11.77□□□□□ -0.53
VPS54-203ENST00000409558 PIEZO2Q9H5I5 2752 aa11.77□□□□□ -0.53
VPS54-203ENST00000409558 FBXO24O75426 580 aa11.76□□□□□ -0.53
VPS54-203ENST00000409558 OR2A4O95047 310 aa11.76□□□□□ -0.53
VPS54-203ENST00000409558 NTF4P34130 210 aa11.76□□□□□ -0.53
VPS54-203ENST00000409558 CARD18P57730 90 aa11.76□□□□□ -0.53
VPS54-203ENST00000409558 PHLDA2Q53GA4 152 aa11.76□□□□□ -0.53
VPS54-203ENST00000409558 SMUG1Q53HV7 270 aa11.76□□□□□ -0.53
VPS54-203ENST00000409558 RAB12Q6IQ22 244 aa11.76□□□□□ -0.53
VPS54-203ENST00000409558 TMED6Q8WW62 240 aa11.76□□□□□ -0.53
VPS54-203ENST00000409558 FBXW5Q969U6 566 aa11.76□□□□□ -0.53
VPS54-203ENST00000409558 FBXO17Q96EF6 278 aa11.76□□□□□ -0.53
VPS54-203ENST00000409558 LYZL4Q96KX0 146 aa11.76□□□□□ -0.53
VPS54-203ENST00000409558 OR2A7Q96R45 310 aa11.76□□□□□ -0.53
VPS54-203ENST00000409558 ZNF850A8MQ14 1090 aa11.76□□□□□ -0.53
VPS54-203ENST00000409558 KLF7O75840 302 aaPredicted RBP11.76□□□□□ -0.53
VPS54-203ENST00000409558 ZNF17P17021 662 aa11.76□□□□□ -0.53
VPS54-203ENST00000409558 RBMXP38159 391 aaKnown RBP11.76□□□□□ -0.53
VPS54-203ENST00000409558 OR9K2Q8NGE7 335 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms