RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 OPA3Q9H6K4 179 aa-1.75□□□□□ -2.69
RNU6-540P-201ENST00000384622 NOL11Q9H8H0 719 aaKnown RBP-1.75□□□□□ -2.69
RNU6-540P-201ENST00000384622 HMG20AQ9NP66 347 aa-1.75□□□□□ -2.69
RNU6-540P-201ENST00000384622 IFT46Q9NQC8 304 aa-1.75□□□□□ -2.69
RNU6-540P-201ENST00000384622 FBXO6Q9NRD1 293 aaPredicted RBP-1.75□□□□□ -2.69
RNU6-540P-201ENST00000384622 DNAJC17Q9NVM6 304 aaKnown RBP-1.75□□□□□ -2.69
RNU6-540P-201ENST00000384622 ELOVL2Q9NXB9 296 aa-1.75□□□□□ -2.69
RNU6-540P-201ENST00000384622 DCAF16Q9NXF7 216 aa-1.75□□□□□ -2.69
RNU6-540P-201ENST00000384622 BCCIPQ9P287 314 aaKnown RBP eCLIP-1.75□□□□□ -2.69
RNU6-540P-201ENST00000384622 CES1P1Q9UKY3 287 aa-1.75□□□□□ -2.69
RNU6-540P-201ENST00000384622 HHLA2Q9UM44 414 aa-1.75□□□□□ -2.69
RNU6-540P-201ENST00000384622 LIPT1Q9Y234 373 aa-1.75□□□□□ -2.69
RNU6-540P-201ENST00000384622 TDRKHQ9Y2W6 561 aaKnown RBP-1.75□□□□□ -2.69
RNU6-540P-201ENST00000384622 HLA-DRB4X5D2U9 266 aa-1.75□□□□□ -2.69
RNU6-540P-201ENST00000384622 PIK3C2AO00443 1686 aa-1.75□□□□□ -2.69
RNU6-540P-201ENST00000384622 MTUS2Q5JR59 1369 aa-1.75□□□□□ -2.69
RNU6-540P-201ENST00000384622 SOGA1O94964 1423 aa-1.75□□□□□ -2.69
RNU6-540P-201ENST00000384622 PRG4Q92954 1404 aaPredicted RBP-1.75□□□□□ -2.69
RNU6-540P-201ENST00000384622 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 TRIP11Q15643 1979 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 A0A087WV62 115 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 IGHV3-43A0A0B4J1X8 118 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 FAM230AA0A1W2PPH8 454 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 TMEM223A0PJW6 202 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 BICDL2A1A5D9 508 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 TMEM114B3SHH9 223 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 CCRL2O00421 344 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 CPLX1O14810 134 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 RAD51BO15315 384 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 TM9SF1O15321 606 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 ST8SIA3O43173 380 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 TYROBPO43914 113 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 SSX5O60225 188 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 PEX14O75381 377 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 SUPT3HO75486 399 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 UPK1BO75841 260 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 SNAPINO95295 136 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 ETHE1O95571 254 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 BCHEP06276 602 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 PFN1P07737 140 aaKnown RBP-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 ANKRD34CP0C6C1 535 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 SFTPCP11686 197 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 POU2F1P14859 743 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 M6PRP20645 277 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 CRYGSP22914 178 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 IL32P24001 234 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 ACKR3P25106 362 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 TMOD1P28289 359 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 HSPA1LP34931 641 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 RCVRNP35243 200 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 PPICP45877 212 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 HTR3AP46098 478 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 AQP4P55087 323 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 SRP54P61011 504 aaKnown RBP-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 UBE2D3P61077 147 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 RPL27P61353 136 aaKnown RBP-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 SNRPD3P62318 126 aaKnown RBP-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 UBE2D2P62837 147 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 CSNK1G2P78368 415 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 TFCP2Q12800 502 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 NPRL3Q12980 569 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 PTK6Q13882 451 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 KCNJ8Q15842 424 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 RBBP7Q16576 425 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 UGCGQ16739 394 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 MEP1BQ16820 701 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 ZBED5Q49AG3 693 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 ZNF542PQ5EBM4 170 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 MEDAGQ5VYS4 303 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 CENPPQ6IPU0 288 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 PRMT9Q6P2P2 845 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 CASC4Q6P4E1 433 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 FUT10Q6P4F1 479 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 ALKAL1Q6UXT8 129 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 MOB2Q70IA6 237 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 SLC16A14Q7RTX9 510 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 VRK2Q86Y07 508 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 CCAR1Q8IX12 1150 aaKnown RBP-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 Q8N2B8 174 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 LRRC25Q8N386 305 aaPredicted RBP-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 MS4A15Q8N5U1 240 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 CNEP1R1Q8N9A8 125 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 OR52H1Q8NGJ2 320 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 OR4X1Q8NH49 305 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 COQ8AQ8NI60 647 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 SFXN5Q8TD22 340 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 GNPDA2Q8TDQ7 276 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 C17orf50Q8WW18 174 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 SPDL1Q96EA4 605 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 ZNF830Q96NB3 372 aaPredicted RBP-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 CNN2Q99439 309 aaKnown RBP-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 NAPGQ99747 312 aaPredicted RBP-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 NCAPGQ9BPX3 1015 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 MRPL34Q9BQ48 92 aaKnown RBP-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 TM2D1Q9BX74 207 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 POTEKPQ9BYX7 375 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 OR2J1Q9GZK6 312 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 PORCNQ9H237 461 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 UNC45AQ9H3U1 944 aa-1.76□□□□□ -2.69
RNU6-540P-201ENST00000384622 TMEM38AQ9H6F2 299 aa-1.76□□□□□ -2.69
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms