RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 ARMC10Q8N2F6 343 aa11.73□□□□□ -0.53
CCDC3-202ENST00000378839 OR10K1Q8NGX5 313 aa11.73□□□□□ -0.53
CCDC3-202ENST00000378839 ARHGAP5-AS1Q96IT6 56 aa11.73□□□□□ -0.53
CCDC3-202ENST00000378839 NUP50Q9UKX7 468 aa11.73□□□□□ -0.53
CCDC3-202ENST00000378839 TECTAO75443 2155 aa11.73□□□□□ -0.53
CCDC3-202ENST00000378839 HCKP08631 526 aa11.73□□□□□ -0.53
CCDC3-202ENST00000378839 MPZP25189 248 aa11.73□□□□□ -0.53
CCDC3-202ENST00000378839 AVPR2P30518 371 aa11.73□□□□□ -0.53
CCDC3-202ENST00000378839 FAM122CQ6P4D5 195 aa11.73□□□□□ -0.53
CCDC3-202ENST00000378839 DOK3Q7L591 496 aa11.73□□□□□ -0.53
CCDC3-202ENST00000378839 AIFM2Q9BRQ8 373 aa11.73□□□□□ -0.53
CCDC3-202ENST00000378839 ARL6Q9H0F7 186 aa11.73□□□□□ -0.53
CCDC3-202ENST00000378839 SPENQ96T58 3664 aaKnown RBP11.73□□□□□ -0.53
CCDC3-202ENST00000378839 LRRC3CA6NJW4 275 aa11.73□□□□□ -0.53
CCDC3-202ENST00000378839 FOXI3A8MTJ6 420 aaPredicted RBP11.73□□□□□ -0.53
CCDC3-202ENST00000378839 SHOXO15266 292 aa11.73□□□□□ -0.53
CCDC3-202ENST00000378839 DHHO43323 396 aa11.73□□□□□ -0.53
CCDC3-202ENST00000378839 KCNAB3O43448 404 aa11.73□□□□□ -0.53
CCDC3-202ENST00000378839 STK17BO94768 372 aa11.73□□□□□ -0.53
CCDC3-202ENST00000378839 PATE4P0C8F1 98 aa11.73□□□□□ -0.53
CCDC3-202ENST00000378839 IL32P24001 234 aa11.73□□□□□ -0.53
CCDC3-202ENST00000378839 OTX2P32243 289 aa11.73□□□□□ -0.53
CCDC3-202ENST00000378839 FOLR3P41439 243 aa11.73□□□□□ -0.53
CCDC3-202ENST00000378839 GRB2P62993 217 aaKnown RBP11.73□□□□□ -0.53
CCDC3-202ENST00000378839 SLC23A3Q6PIS1 610 aa11.73□□□□□ -0.53
CCDC3-202ENST00000378839 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.73□□□□□ -0.53
CCDC3-202ENST00000378839 OR5M8Q8NGP6 311 aa11.73□□□□□ -0.53
CCDC3-202ENST00000378839 COQ8AQ8NI60 647 aa11.73□□□□□ -0.53
CCDC3-202ENST00000378839 PGAM5Q96HS1 289 aa11.73□□□□□ -0.53
CCDC3-202ENST00000378839 ZNF581Q9P0T4 197 aa11.73□□□□□ -0.53
CCDC3-202ENST00000378839 UPB1Q9UBR1 384 aa11.73□□□□□ -0.53
CCDC3-202ENST00000378839 NPIPA2E9PIF3 369 aa11.72□□□□□ -0.53
CCDC3-202ENST00000378839 NPIPA3F8WFD2 350 aa11.72□□□□□ -0.53
CCDC3-202ENST00000378839 MSTNO14793 375 aa11.72□□□□□ -0.53
CCDC3-202ENST00000378839 NMBP08949 121 aa11.72□□□□□ -0.53
CCDC3-202ENST00000378839 M6PRP20645 277 aa11.72□□□□□ -0.53
CCDC3-202ENST00000378839 OTX1P32242 354 aaPredicted RBP11.72□□□□□ -0.53
CCDC3-202ENST00000378839 RAC1P63000 192 aa11.72□□□□□ -0.53
CCDC3-202ENST00000378839 ZNF660Q6AZW8 331 aaPredicted RBP11.72□□□□□ -0.53
CCDC3-202ENST00000378839 PLXDC2Q6UX71 529 aa11.72□□□□□ -0.53
CCDC3-202ENST00000378839 PGAP1Q75T13 922 aa11.72□□□□□ -0.53
CCDC3-202ENST00000378839 HDDC2Q7Z4H3 204 aa11.72□□□□□ -0.53
CCDC3-202ENST00000378839 C20orf196Q8IYI0 205 aa11.72□□□□□ -0.53
CCDC3-202ENST00000378839 ANAPC10Q9UM13 185 aa11.72□□□□□ -0.53
CCDC3-202ENST00000378839 A0A1W2PNU3 283 aaPredicted RBP11.72□□□□□ -0.53
CCDC3-202ENST00000378839 C9orf170A2RU37 121 aa11.72□□□□□ -0.53
CCDC3-202ENST00000378839 RFPL4AA6NLU0 287 aa11.72□□□□□ -0.53
CCDC3-202ENST00000378839 DISC1C4P0D8 188 aa11.72□□□□□ -0.53
CCDC3-202ENST00000378839 RFPL4AL1F8VTS6 287 aa11.72□□□□□ -0.53
CCDC3-202ENST00000378839 EFSO43281 561 aa11.72□□□□□ -0.53
CCDC3-202ENST00000378839 CRTAPO75718 401 aaPredicted RBP11.72□□□□□ -0.53
CCDC3-202ENST00000378839 CER1O95813 267 aa11.72□□□□□ -0.53
CCDC3-202ENST00000378839 IL2RAP01589 272 aa11.72□□□□□ -0.53
CCDC3-202ENST00000378839 HIST1H1DP16402 221 aaKnown RBP11.72□□□□□ -0.53
CCDC3-202ENST00000378839 FKBP2P26885 142 aaKnown RBP11.72□□□□□ -0.53
CCDC3-202ENST00000378839 MPGP29372 298 aa11.72□□□□□ -0.53
CCDC3-202ENST00000378839 MEF2DQ14814 521 aa11.72□□□□□ -0.53
CCDC3-202ENST00000378839 KISS1Q15726 138 aa11.72□□□□□ -0.53
CCDC3-202ENST00000378839 CCDC107Q8WV48 283 aa11.72□□□□□ -0.53
CCDC3-202ENST00000378839 ROBO4Q8WZ75 1007 aa11.72□□□□□ -0.53
CCDC3-202ENST00000378839 TMEM41AQ96HV5 264 aa11.72□□□□□ -0.53
CCDC3-202ENST00000378839 PRR13Q9NZ81 148 aa11.72□□□□□ -0.53
CCDC3-202ENST00000378839 V9GYS6 101 aa11.72□□□□□ -0.53
CCDC3-202ENST00000378839 MYO7BQ6PIF6 2116 aa11.72□□□□□ -0.53
CCDC3-202ENST00000378839 CCDC187A0A096LP49 1063 aa11.71□□□□□ -0.53
CCDC3-202ENST00000378839 MFNGO00587 321 aa11.71□□□□□ -0.53
CCDC3-202ENST00000378839 CBR3O75828 277 aa11.71□□□□□ -0.53
CCDC3-202ENST00000378839 CD8AP01732 235 aa11.71□□□□□ -0.53
CCDC3-202ENST00000378839 ERCC1P07992 297 aaPredicted RBP11.71□□□□□ -0.53
CCDC3-202ENST00000378839 CD34P28906 385 aa11.71□□□□□ -0.53
CCDC3-202ENST00000378839 SLC6A9P48067 706 aa11.71□□□□□ -0.53
CCDC3-202ENST00000378839 BEST3Q8N1M1 668 aa11.71□□□□□ -0.53
CCDC3-202ENST00000378839 OR2AE1Q8NHA4 323 aa11.71□□□□□ -0.53
CCDC3-202ENST00000378839 MARCH1Q8TCQ1 289 aa11.71□□□□□ -0.53
CCDC3-202ENST00000378839 MAFIPQ8WZ33 124 aa11.71□□□□□ -0.53
CCDC3-202ENST00000378839 RAB3CQ96E17 227 aa11.71□□□□□ -0.53
CCDC3-202ENST00000378839 TCFL5Q9UL49 500 aa11.71□□□□□ -0.53
CCDC3-202ENST00000378839 OR5H14A6NHG9 310 aa11.71□□□□□ -0.53
CCDC3-202ENST00000378839 TLX3O43711 291 aaPredicted RBP11.71□□□□□ -0.53
CCDC3-202ENST00000378839 ACKR3P25106 362 aa11.71□□□□□ -0.53
CCDC3-202ENST00000378839 SRSF4Q08170 494 aaKnown RBP11.71□□□□□ -0.53
CCDC3-202ENST00000378839 LRRC37A5PQ49AS3 106 aa11.71□□□□□ -0.53
CCDC3-202ENST00000378839 RGS7BPQ6MZT1 257 aaPredicted RBP11.71□□□□□ -0.53
CCDC3-202ENST00000378839 OR2W3Q7Z3T1 314 aa11.71□□□□□ -0.53
CCDC3-202ENST00000378839 LYG2Q86SG7 212 aa11.71□□□□□ -0.53
CCDC3-202ENST00000378839 GJC3Q8NFK1 279 aa11.71□□□□□ -0.53
CCDC3-202ENST00000378839 FGFBP3Q8TAT2 258 aa11.71□□□□□ -0.53
CCDC3-202ENST00000378839 PRRT1Q99946 306 aa11.71□□□□□ -0.53
CCDC3-202ENST00000378839 NUDT16L1Q9BRJ7 211 aaKnown RBP11.71□□□□□ -0.53
CCDC3-202ENST00000378839 TMEM59Q9BXS4 323 aa11.71□□□□□ -0.53
CCDC3-202ENST00000378839 IFT46Q9NQC8 304 aa11.71□□□□□ -0.53
CCDC3-202ENST00000378839 RLN2P04090 185 aa11.71□□□□□ -0.54
CCDC3-202ENST00000378839 PRF1P14222 555 aa11.71□□□□□ -0.54
CCDC3-202ENST00000378839 AKR1C4P17516 323 aa11.71□□□□□ -0.54
CCDC3-202ENST00000378839 TUSC1Q2TAM9 212 aa11.71□□□□□ -0.54
CCDC3-202ENST00000378839 DTWD2Q8NBA8 298 aa11.71□□□□□ -0.54
CCDC3-202ENST00000378839 OR4K15Q8NH41 348 aa11.71□□□□□ -0.54
CCDC3-202ENST00000378839 TMEM230Q96A57 120 aa11.71□□□□□ -0.54
CCDC3-202ENST00000378839 SGK3Q96BR1 496 aa11.71□□□□□ -0.54
CCDC3-202ENST00000378839 MFFQ9GZY8 342 aa11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms