RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 SLAMF6Q96DU3 332 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 POM121Q96HA1 1249 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 C7orf72A4D263 438 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 TNFRSF10CO14798 259 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 ZNF737O75373 536 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 CD40P25942 277 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 RELBQ01201 579 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 ERV3-1Q14264 604 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 ARRDC1Q8N5I2 433 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 RBPJLQ9UBG7 517 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 COA3Q9Y2R0 106 aaPredicted RBP10.56□□□□□ -0.72
VPS13A-205ENST00000376636 CHST2Q9Y4C5 530 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 A0A1B0GX78 115 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 ARRB2P32121 409 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 ACAA2P42765 397 aaKnown RBP10.56□□□□□ -0.72
VPS13A-205ENST00000376636 PRSS42Q7Z5A4 293 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 PERPQ96FX8 193 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 PACRGQ96M98 296 aaPredicted RBP10.56□□□□□ -0.72
VPS13A-205ENST00000376636 ZNF816Q0VGE8 651 aaPredicted RBP10.56□□□□□ -0.72
VPS13A-205ENST00000376636 IL23AQ9NPF7 189 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 SLAMF8Q9P0V8 285 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 RCL1Q9Y2P8 373 aaKnown RBP10.56□□□□□ -0.72
VPS13A-205ENST00000376636 PHIPQ8WWQ0 1821 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 ISLRO14498 428 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 LYZL6O75951 148 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 SNRPNP63162 240 aaKnown RBP10.56□□□□□ -0.72
VPS13A-205ENST00000376636 OR4D10Q8NGI6 311 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 CLDN23Q96B33 292 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 CHST6Q9GZX3 395 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 NAA60Q9H7X0 242 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 ACP1P24666 158 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 HAAOP46952 286 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 CLDN2P57739 230 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 OCIAD1Q9NX40 245 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 FAM186AA6NE01 2351 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 ECM29Q5VYK3 1845 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 PRRG2O14669 202 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 NUDT3O95989 172 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 CHD3Q12873 2000 aaKnown RBP10.56□□□□□ -0.72
VPS13A-205ENST00000376636 MELTFP08582 738 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 OR10J1P30954 320 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 DGCR2P98153 550 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 SAXO2Q658L1 398 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 TMEM65Q6PI78 240 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 TRAT1Q6PIZ9 186 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 PDPNQ86YL7 162 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 MFNGO00587 321 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 RHBDL1O75783 438 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 PMP22Q01453 160 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 HSD11B1LQ7Z5J1 315 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 ZIC5Q96T25 663 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 TXNIPQ9H3M7 391 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 ANXA10Q9UJ72 324 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 R4GMQ9 66 aa10.56□□□□□ -0.72
VPS13A-205ENST00000376636 FUCA1P04066 466 aa10.55□□□□□ -0.72
VPS13A-205ENST00000376636 CD82P27701 267 aa10.55□□□□□ -0.72
VPS13A-205ENST00000376636 CST5P28325 142 aaPredicted RBP10.55□□□□□ -0.72
VPS13A-205ENST00000376636 MDH2P40926 338 aaKnown RBP10.55□□□□□ -0.72
VPS13A-205ENST00000376636 RACK1P63244 317 aaKnown RBP10.55□□□□□ -0.72
VPS13A-205ENST00000376636 ZNF511Q8NB15 262 aa10.55□□□□□ -0.72
VPS13A-205ENST00000376636 ICAM5Q9UMF0 924 aa10.55□□□□□ -0.72
VPS13A-205ENST00000376636 N4BP2Q86UW6 1770 aaPredicted RBP10.55□□□□□ -0.72
VPS13A-205ENST00000376636 RGPD5Q99666 1765 aa10.55□□□□□ -0.72
VPS13A-205ENST00000376636 POM121BA6NF01 834 aa10.55□□□□□ -0.72
VPS13A-205ENST00000376636 CYR61O00622 381 aa10.55□□□□□ -0.72
VPS13A-205ENST00000376636 PTGER1P34995 402 aa10.55□□□□□ -0.72
VPS13A-205ENST00000376636 JAG1P78504 1218 aa10.55□□□□□ -0.72
VPS13A-205ENST00000376636 OR51E1Q8TCB6 317 aa10.55□□□□□ -0.72
VPS13A-205ENST00000376636 MBD3L1Q8WWY6 194 aa10.55□□□□□ -0.72
VPS13A-205ENST00000376636 WDR89Q96FK6 387 aaPredicted RBP10.55□□□□□ -0.72
VPS13A-205ENST00000376636 GPR84Q9NQS5 396 aa10.55□□□□□ -0.72
VPS13A-205ENST00000376636 CRYAAP02489 173 aa10.55□□□□□ -0.72
VPS13A-205ENST00000376636 RIGQ13278 110 aa10.55□□□□□ -0.72
VPS13A-205ENST00000376636 Q6ZPB1 254 aaPredicted RBP10.55□□□□□ -0.72
VPS13A-205ENST00000376636 OR5AU1Q8NGC0 362 aa10.55□□□□□ -0.72
VPS13A-205ENST00000376636 TRAPPC4Q9Y296 219 aa10.55□□□□□ -0.72
VPS13A-205ENST00000376636 EXOGQ9Y2C4 368 aaKnown RBP10.55□□□□□ -0.72
VPS13A-205ENST00000376636 COL1A1P02452 1464 aaPredicted RBP10.55□□□□□ -0.72
VPS13A-205ENST00000376636 PSMB5P28074 263 aa10.55□□□□□ -0.72
VPS13A-205ENST00000376636 TMEM40Q8WWA1 233 aa10.55□□□□□ -0.72
VPS13A-205ENST00000376636 SCMH1Q96GD3 660 aa10.55□□□□□ -0.72
VPS13A-205ENST00000376636 ZNF426Q9BUY5 554 aa10.55□□□□□ -0.72
VPS13A-205ENST00000376636 MBTPS2O43462 519 aa10.55□□□□□ -0.72
VPS13A-205ENST00000376636 WDTC1Q8N5D0 677 aa10.55□□□□□ -0.72
VPS13A-205ENST00000376636 ZDHHC19Q8WVZ1 309 aaPredicted RBP10.55□□□□□ -0.72
VPS13A-205ENST00000376636 ATOH8Q96SQ7 321 aa10.55□□□□□ -0.72
VPS13A-205ENST00000376636 IQCF3P0C7M6 154 aa10.55□□□□□ -0.72
VPS13A-205ENST00000376636 CXCL12P48061 93 aa10.55□□□□□ -0.72
VPS13A-205ENST00000376636 EVX1P49640 407 aa10.55□□□□□ -0.72
VPS13A-205ENST00000376636 ELAVL1Q15717 326 aaKnown RBP10.55□□□□□ -0.72
VPS13A-205ENST00000376636 SLC48A1Q6P1K1 146 aa10.55□□□□□ -0.72
VPS13A-205ENST00000376636 MUC15Q8N387 334 aa10.55□□□□□ -0.72
VPS13A-205ENST00000376636 TEAD3Q99594 435 aa10.55□□□□□ -0.72
VPS13A-205ENST00000376636 GPR61Q9BZJ8 451 aa10.55□□□□□ -0.72
VPS13A-205ENST00000376636 ZFP30Q9Y2G7 519 aa10.55□□□□□ -0.72
VPS13A-205ENST00000376636 KIR2DL1P43626 348 aaPredicted RBP10.55□□□□□ -0.72
VPS13A-205ENST00000376636 KIR2DL2P43627 348 aaPredicted RBP10.55□□□□□ -0.72
VPS13A-205ENST00000376636 C21orf62-AS1Q17RA5 79 aa10.55□□□□□ -0.72
VPS13A-205ENST00000376636 HTR3DQ70Z44 454 aa10.55□□□□□ -0.72
VPS13A-205ENST00000376636 OSR2Q8N2R0 312 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms