RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 FN3KRPQ9HA64 309 aa17.01■□□□□ 0.31
COL9A3-201ENST00000343916 PLEK2Q9NYT0 353 aa17.01■□□□□ 0.31
COL9A3-201ENST00000343916 PLEKHA6Q9Y2H5 1048 aa17.01■□□□□ 0.31
COL9A3-201ENST00000343916 SESN1Q9Y6P5 492 aa17.01■□□□□ 0.31
COL9A3-201ENST00000343916 TECTAO75443 2155 aa17■□□□□ 0.31
COL9A3-201ENST00000343916 AHCTF1Q8WYP5 2266 aa17■□□□□ 0.31
COL9A3-201ENST00000343916 NUPL2O15504 423 aaKnown RBP17■□□□□ 0.31
COL9A3-201ENST00000343916 RAD51DO75771 328 aa17■□□□□ 0.31
COL9A3-201ENST00000343916 VAMP5O95183 116 aa17■□□□□ 0.31
COL9A3-201ENST00000343916 NR2C1P13056 603 aa17■□□□□ 0.31
COL9A3-201ENST00000343916 NTF4P34130 210 aa17■□□□□ 0.31
COL9A3-201ENST00000343916 GMFBP60983 142 aa17■□□□□ 0.31
COL9A3-201ENST00000343916 BAMBIQ13145 260 aa17■□□□□ 0.31
COL9A3-201ENST00000343916 CRIP3Q6Q6R5 217 aa17■□□□□ 0.31
COL9A3-201ENST00000343916 BEST3Q8N1M1 668 aa17■□□□□ 0.31
COL9A3-201ENST00000343916 NTNG2Q96CW9 530 aa17■□□□□ 0.31
COL9A3-201ENST00000343916 FBXO17Q96EF6 278 aa17■□□□□ 0.31
COL9A3-201ENST00000343916 DMRTA2Q96SC8 542 aa17■□□□□ 0.31
COL9A3-201ENST00000343916 PIGQQ9BRB3 760 aa17■□□□□ 0.31
COL9A3-201ENST00000343916 NAA11Q9BSU3 229 aaPredicted RBP17■□□□□ 0.31
COL9A3-201ENST00000343916 MFFQ9GZY8 342 aa17■□□□□ 0.31
COL9A3-201ENST00000343916 MYOZ1Q9NP98 299 aaPredicted RBP17■□□□□ 0.31
COL9A3-201ENST00000343916 FOXD3Q9UJU5 478 aaPredicted RBP17■□□□□ 0.31
COL9A3-201ENST00000343916 GPR179Q6PRD1 2367 aa17■□□□□ 0.31
COL9A3-201ENST00000343916 BET1O15155 118 aa16.99■□□□□ 0.31
COL9A3-201ENST00000343916 SCGNO76038 276 aa16.99■□□□□ 0.31
COL9A3-201ENST00000343916 RFPL3SP0C7P2 107 aa16.99■□□□□ 0.31
COL9A3-201ENST00000343916 KISS1Q15726 138 aa16.99■□□□□ 0.31
COL9A3-201ENST00000343916 CLVS2Q5SYC1 327 aa16.99■□□□□ 0.31
COL9A3-201ENST00000343916 SLC23A3Q6PIS1 610 aa16.99■□□□□ 0.31
COL9A3-201ENST00000343916 SLC25A42Q86VD7 318 aa16.99■□□□□ 0.31
COL9A3-201ENST00000343916 OR5M8Q8NGP6 311 aa16.99■□□□□ 0.31
COL9A3-201ENST00000343916 OR10K1Q8NGX5 313 aa16.99■□□□□ 0.31
COL9A3-201ENST00000343916 OR4K15Q8NH41 348 aa16.99■□□□□ 0.31
COL9A3-201ENST00000343916 SSC4DQ8WTU2 575 aa16.99■□□□□ 0.31
COL9A3-201ENST00000343916 ARHGAP5-AS1Q96IT6 56 aa16.99■□□□□ 0.31
COL9A3-201ENST00000343916 ZC3H10Q96K80 434 aaKnown RBP16.99■□□□□ 0.31
COL9A3-201ENST00000343916 RFPL4AA6NLU0 287 aa16.99■□□□□ 0.31
COL9A3-201ENST00000343916 ATP6V1G2-DDX39BF2Z307 99 aa16.99■□□□□ 0.31
COL9A3-201ENST00000343916 RFPL4AL1F8VTS6 287 aa16.99■□□□□ 0.31
COL9A3-201ENST00000343916 IFNA6P05013 189 aa16.99■□□□□ 0.31
COL9A3-201ENST00000343916 CHRM2P08172 466 aa16.99■□□□□ 0.31
COL9A3-201ENST00000343916 HIST1H1DP16402 221 aaKnown RBP16.99■□□□□ 0.31
COL9A3-201ENST00000343916 AKR1C4P17516 323 aa16.99■□□□□ 0.31
COL9A3-201ENST00000343916 TCN2P20062 427 aa16.99■□□□□ 0.31
COL9A3-201ENST00000343916 ZBTB25P24278 435 aa16.99■□□□□ 0.31
COL9A3-201ENST00000343916 CTSSP25774 331 aa16.99■□□□□ 0.31
COL9A3-201ENST00000343916 IL13RA1P78552 427 aa16.99■□□□□ 0.31
COL9A3-201ENST00000343916 UBE2V2Q15819 145 aa16.99■□□□□ 0.31
COL9A3-201ENST00000343916 OR2W3Q7Z3T1 314 aa16.99■□□□□ 0.31
COL9A3-201ENST00000343916 PPP1R32Q7Z5V6 425 aa16.99■□□□□ 0.31
COL9A3-201ENST00000343916 DTWD2Q8NBA8 298 aa16.99■□□□□ 0.31
COL9A3-201ENST00000343916 CASTOR1Q8WTX7 329 aa16.99■□□□□ 0.31
COL9A3-201ENST00000343916 PDCD10Q9BUL8 212 aa16.99■□□□□ 0.31
COL9A3-201ENST00000343916 TSPAN9O75954 239 aa16.98■□□□□ 0.31
COL9A3-201ENST00000343916 VAMP1P23763 118 aa16.98■□□□□ 0.31
COL9A3-201ENST00000343916 AVPR2P30518 371 aa16.98■□□□□ 0.31
COL9A3-201ENST00000343916 GSK3AP49840 483 aa16.98■□□□□ 0.31
COL9A3-201ENST00000343916 PRSS12P56730 875 aa16.98■□□□□ 0.31
COL9A3-201ENST00000343916 MICBQ29980 383 aa16.98■□□□□ 0.31
COL9A3-201ENST00000343916 GSG1LQ6UXU4 331 aa16.98■□□□□ 0.31
COL9A3-201ENST00000343916 LYG2Q86SG7 212 aa16.98■□□□□ 0.31
COL9A3-201ENST00000343916 OR14L1PQ8NHC6 308 aa16.98■□□□□ 0.31
COL9A3-201ENST00000343916 PFDN2Q9UHV9 154 aa16.98■□□□□ 0.31
COL9A3-201ENST00000343916 TCFL5Q9UL49 500 aa16.98■□□□□ 0.31
COL9A3-201ENST00000343916 KIAA1549Q9HCM3 1950 aa16.98■□□□□ 0.31
COL9A3-201ENST00000343916 OR5H14A6NHG9 310 aa16.98■□□□□ 0.31
COL9A3-201ENST00000343916 STMND1H3BQB6 276 aa16.98■□□□□ 0.31
COL9A3-201ENST00000343916 M0R135 149 aa16.98■□□□□ 0.31
COL9A3-201ENST00000343916 IGLV3-1P01715 115 aa16.98■□□□□ 0.31
COL9A3-201ENST00000343916 STARP49675 285 aa16.98■□□□□ 0.31
COL9A3-201ENST00000343916 B3GALT5-AS1P59052 145 aa16.98■□□□□ 0.31
COL9A3-201ENST00000343916 SNAI3Q3KNW1 292 aa16.98■□□□□ 0.31
COL9A3-201ENST00000343916 NAXDQ8IW45 347 aa16.98■□□□□ 0.31
COL9A3-201ENST00000343916 STPG2Q8N412 459 aa16.98■□□□□ 0.31
COL9A3-201ENST00000343916 TMEM105Q8N8V8 129 aa16.98■□□□□ 0.31
COL9A3-201ENST00000343916 MARCH1Q8TCQ1 289 aa16.98■□□□□ 0.31
COL9A3-201ENST00000343916 SCARB1Q8WTV0 552 aa16.98■□□□□ 0.31
COL9A3-201ENST00000343916 ZNF799Q96GE5 643 aa16.98■□□□□ 0.31
COL9A3-201ENST00000343916 C9orf170A2RU37 121 aa16.97■□□□□ 0.31
COL9A3-201ENST00000343916 FAM25EA8MYX2 175 aa16.97■□□□□ 0.31
COL9A3-201ENST00000343916 B3GALNT1O75752 331 aa16.97■□□□□ 0.31
COL9A3-201ENST00000343916 DHRS3O75911 302 aa16.97■□□□□ 0.31
COL9A3-201ENST00000343916 SPDEFO95238 335 aa16.97■□□□□ 0.31
COL9A3-201ENST00000343916 P04436 131 aa16.97■□□□□ 0.31
COL9A3-201ENST00000343916 TIPARPQ7Z3E1 657 aaKnown RBP16.97■□□□□ 0.31
COL9A3-201ENST00000343916 ZNF546Q86UE3 836 aa16.97■□□□□ 0.31
COL9A3-201ENST00000343916 NUDT16L1Q9BRJ7 211 aaKnown RBP16.97■□□□□ 0.31
COL9A3-201ENST00000343916 SHARPINQ9H0F6 387 aa16.97■□□□□ 0.31
COL9A3-201ENST00000343916 PADI1Q9ULC6 663 aa16.97■□□□□ 0.31
COL9A3-201ENST00000343916 PIGLQ9Y2B2 252 aa16.97■□□□□ 0.31
COL9A3-201ENST00000343916 PTGFRP43088 359 aa16.97■□□□□ 0.31
COL9A3-201ENST00000343916 ZNF133P52736 654 aaPredicted RBP16.97■□□□□ 0.31
COL9A3-201ENST00000343916 ECH1Q13011 328 aa16.97■□□□□ 0.31
COL9A3-201ENST00000343916 DCAF12Q5T6F0 453 aa16.97■□□□□ 0.31
COL9A3-201ENST00000343916 FOXL2NBQ6ZUU3 175 aa16.97■□□□□ 0.31
COL9A3-201ENST00000343916 ROBO4Q8WZ75 1007 aa16.97■□□□□ 0.31
COL9A3-201ENST00000343916 PIGTQ969N2 578 aa16.97■□□□□ 0.31
COL9A3-201ENST00000343916 SGCZQ96LD1 299 aa16.97■□□□□ 0.31
COL9A3-201ENST00000343916 NCOR1O75376 2440 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms