RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 RDH8Q9NYR8 311 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 TMEM14DPA8MWL7 114 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 ANGPTL7O43827 346 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 TPPPO94811 219 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 S100A11P31949 105 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 GRB2P62993 217 aaKnown RBP9.08□□□□□ -0.96
LIMA1-201ENST00000341247 IL13RA1P78552 427 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 RSPO1Q2MKA7 263 aaPredicted RBP9.08□□□□□ -0.96
LIMA1-201ENST00000341247 RAB11FIP2Q7L804 512 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 ARMC10Q8N2F6 343 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 HES7Q9BYE0 225 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 EIF1BO60739 113 aaKnown RBP9.08□□□□□ -0.96
LIMA1-201ENST00000341247 GABRR1P24046 479 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 RGS19P49795 217 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 RAC1P63000 192 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 TRA2AQ13595 282 aaKnown RBP eCLIP9.08□□□□□ -0.96
LIMA1-201ENST00000341247 ACER2Q5QJU3 275 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 GALNTL5Q7Z4T8 443 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 ABHD3Q8WU67 409 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 NABP1Q96AH0 204 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 CXorf58Q96LI9 332 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 GSX2Q9BZM3 304 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 SLCO5A1Q9H2Y9 848 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 MOB1AQ9H8S9 216 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 P4HTMQ9NXG6 502 aa9.08□□□□□ -0.96
LIMA1-201ENST00000341247 A0A087WZY1 265 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 FAM230AA0A1W2PPH8 454 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 RP2O75695 350 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 ZNF205O95201 554 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 CD74P04233 296 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 CD37P11049 281 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 CAPZA1P52907 286 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 SSBP1Q04837 148 aaKnown RBP9.07□□□□□ -0.96
LIMA1-201ENST00000341247 MICBQ29980 383 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 TMEM123Q8N131 208 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 RELL2Q8NC24 303 aaPredicted RBP9.07□□□□□ -0.96
LIMA1-201ENST00000341247 C1orf147Q96MC9 270 aaPredicted RBP9.07□□□□□ -0.96
LIMA1-201ENST00000341247 S100A13Q99584 98 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 PRRT1Q99946 306 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 MED13Q9UHV7 2174 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 SPRY1O43609 319 aaPredicted RBP9.07□□□□□ -0.96
LIMA1-201ENST00000341247 LCATP04180 440 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 BLVRBP30043 206 aaPredicted RBP9.07□□□□□ -0.96
LIMA1-201ENST00000341247 MPLP40238 635 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 CASRP41180 1078 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 ZNF84P51523 738 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 GMFBP60983 142 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 SLC9A3R2Q15599 337 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 SLC23A3Q6PIS1 610 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 C6orf15Q6UXA7 325 aaPredicted RBP9.07□□□□□ -0.96
LIMA1-201ENST00000341247 PGAP1Q75T13 922 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 KCNG3Q8TAE7 436 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 THOC3Q96J01 351 aaKnown RBP9.07□□□□□ -0.96
LIMA1-201ENST00000341247 FN3KRPQ9HA64 309 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 ZNF701Q9NV72 531 aaPredicted RBP9.07□□□□□ -0.96
LIMA1-201ENST00000341247 ZNF581Q9P0T4 197 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 RELNP78509 3460 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 A0A0A6YYH2 397 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 C5orf51A6NDU8 294 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 A6NJ64 397 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 SPINK2P20155 84 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 MEF2DQ14814 521 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 PDCD1Q15116 288 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 FAM74A1Q5RGS3 127 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 BRICD5Q6PL45 260 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 ZNF546Q86UE3 836 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 PNLDC1Q8NA58 520 aaKnown RBP9.07□□□□□ -0.96
LIMA1-201ENST00000341247 OR10D3Q8NH80 312 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 PLA2G3Q9NZ20 509 aa9.07□□□□□ -0.96
LIMA1-201ENST00000341247 TRAV14DV4A0A0A6YYC5 116 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 A0A1W2PNU3 283 aaPredicted RBP9.06□□□□□ -0.96
LIMA1-201ENST00000341247 OR5H14A6NHG9 310 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 H3BUI4 141 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 TMEM225BP0DP42 221 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 HIST1H1DP16402 221 aaKnown RBP9.06□□□□□ -0.96
LIMA1-201ENST00000341247 MGMTP16455 207 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 AMY2BP19961 511 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 HGFACQ04756 655 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 C1QTNF12Q5T7M4 302 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 ZNF529Q6P280 563 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 GSG1LQ6UXU4 331 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 LINC00696Q6ZRV3 163 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 AAED1Q7RTV5 226 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 C20orf196Q8IYI0 205 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 TMEM54Q969K7 222 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 PTX4Q96A99 478 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 HDHD3Q9BSH5 251 aaPredicted RBP9.06□□□□□ -0.96
LIMA1-201ENST00000341247 FOXJ2Q9P0K8 574 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 LINC00862A6NCI5 91 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 SGCEO43556 437 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 CCNOP22674 350 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 ACKR3P25106 362 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 PTGFRP43088 359 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 ATP1B3P54709 279 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 LSM6P62312 80 aaKnown RBP9.06□□□□□ -0.96
LIMA1-201ENST00000341247 SIGLEC14Q08ET2 396 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 CCDC28AQ8IWP9 274 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 FGFBP3Q8TAT2 258 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 OR10A2Q9H208 303 aa9.06□□□□□ -0.96
LIMA1-201ENST00000341247 SH2D2AQ9NP31 389 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms