RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 ZNF286AQ9HBT8 521 aa10.19□□□□□ -0.78
VPS4A-201ENST00000254950 ASCL3Q9NQ33 180 aa10.19□□□□□ -0.78
VPS4A-201ENST00000254950 ADAMTS9Q9P2N4 1935 aa10.19□□□□□ -0.78
VPS4A-201ENST00000254950 FUOMA2VDF0 154 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 DGCR2P98153 550 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 EFNB1P98172 346 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 TNK1Q13470 666 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 CAMK2BQ13554 666 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 RGS7BPQ6MZT1 257 aaPredicted RBP10.18□□□□□ -0.78
VPS4A-201ENST00000254950 CD200R1LQ6Q8B3 271 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 SLC25A26Q70HW3 274 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 RHOUQ7L0Q8 258 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 SPACA3Q8IXA5 215 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 RND1Q92730 232 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 SNAPC3Q92966 411 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 SPACA1Q9HBV2 294 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 ATP23Q9Y6H3 246 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 HEATR5AQ86XA9 2040 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 LPLP06858 475 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 PSMB1P20618 241 aaKnown RBP10.18□□□□□ -0.78
VPS4A-201ENST00000254950 KISS1Q15726 138 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 METTL11BQ5VVY1 283 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 STEAP1BQ6NZ63 245 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 HAGHLQ6PII5 290 aaPredicted RBP10.18□□□□□ -0.78
VPS4A-201ENST00000254950 DTX1Q86Y01 620 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 OR6F1Q8NGZ6 308 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 ZNRF4Q8WWF5 429 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 TMEM54Q969K7 222 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 TMEM45BQ96B21 275 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 ABHD17AQ96GS6 310 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 AMDHD2Q9Y303 409 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 TTRP02766 147 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 LHX2P50458 406 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 SEC61A1P61619 476 aaKnown RBP10.18□□□□□ -0.78
VPS4A-201ENST00000254950 INO80CQ6PI98 192 aaPredicted RBP10.18□□□□□ -0.78
VPS4A-201ENST00000254950 BHLHA15Q7RTS1 189 aaPredicted RBP10.18□□□□□ -0.78
VPS4A-201ENST00000254950 SKA3Q8IX90 412 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 OR51A4Q8NGJ6 313 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 OR4K15Q8NH41 348 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 EMG1Q92979 244 aaKnown RBP10.18□□□□□ -0.78
VPS4A-201ENST00000254950 TOMM40LQ969M1 308 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 PGLYRP3Q96LB9 341 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 NBASA2RRP1 2371 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 TMEM235A6NFC5 223 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 AQP7O14520 342 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 RLN2P04090 185 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 MGMTP16455 207 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 PSG4Q00888 419 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 SRSF6Q13247 344 aaKnown RBP10.18□□□□□ -0.78
VPS4A-201ENST00000254950 OR2T2Q6IF00 324 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 SLC25A24Q6NUK1 477 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 ASCC1Q8N9N2 400 aaKnown RBP10.18□□□□□ -0.78
VPS4A-201ENST00000254950 C10orf35Q96D05 121 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 MAP6Q96JE9 813 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 SLC17A5Q9NRA2 495 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 EHFQ9NZC4 300 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 OR5V1Q9UGF6 321 aa10.18□□□□□ -0.78
VPS4A-201ENST00000254950 ZNF732B4DXR9 585 aa10.17□□□□□ -0.78
VPS4A-201ENST00000254950 HAAOP46952 286 aa10.17□□□□□ -0.78
VPS4A-201ENST00000254950 P2RY6Q15077 328 aa10.17□□□□□ -0.78
VPS4A-201ENST00000254950 CCDC92Q53HC0 331 aaPredicted RBP10.17□□□□□ -0.78
VPS4A-201ENST00000254950 OLFML2AQ68BL7 652 aa10.17□□□□□ -0.78
VPS4A-201ENST00000254950 MFSD4AQ8N468 514 aa10.17□□□□□ -0.78
VPS4A-201ENST00000254950 OR52N4Q8NGI2 321 aa10.17□□□□□ -0.78
VPS4A-201ENST00000254950 OR56B4Q8NH76 319 aa10.17□□□□□ -0.78
VPS4A-201ENST00000254950 SYT3Q9BQG1 590 aa10.17□□□□□ -0.78
VPS4A-201ENST00000254950 LINC00470Q9BZP3 86 aa10.17□□□□□ -0.78
VPS4A-201ENST00000254950 PPA2Q9H2U2 334 aa10.17□□□□□ -0.78
VPS4A-201ENST00000254950 NOX3Q9HBY0 568 aa10.17□□□□□ -0.78
VPS4A-201ENST00000254950 PRSS50Q9UI38 385 aa10.17□□□□□ -0.78
VPS4A-201ENST00000254950 SF3B6Q9Y3B4 125 aaKnown RBP10.17□□□□□ -0.78
VPS4A-201ENST00000254950 TRAV8-7A0A075B6U6 113 aa10.17□□□□□ -0.78
VPS4A-201ENST00000254950 MEIOCA2RUB1 952 aa10.17□□□□□ -0.78
VPS4A-201ENST00000254950 XRCC3O43542 346 aa10.17□□□□□ -0.78
VPS4A-201ENST00000254950 PNPP00491 289 aa10.17□□□□□ -0.78
VPS4A-201ENST00000254950 AKR1C4P17516 323 aa10.17□□□□□ -0.78
VPS4A-201ENST00000254950 CLDN18P56856 261 aa10.17□□□□□ -0.78
VPS4A-201ENST00000254950 GNG3P63215 75 aa10.17□□□□□ -0.78
VPS4A-201ENST00000254950 NHLH1Q02575 133 aa10.17□□□□□ -0.78
VPS4A-201ENST00000254950 ASAH1Q13510 395 aa10.17□□□□□ -0.78
VPS4A-201ENST00000254950 TAF9Q16594 264 aa10.17□□□□□ -0.78
VPS4A-201ENST00000254950 ZCCHC14Q8WYQ9 949 aaKnown RBP10.17□□□□□ -0.78
VPS4A-201ENST00000254950 MRPL13Q9BYD1 178 aaKnown RBP10.17□□□□□ -0.78
VPS4A-201ENST00000254950 BARHL1Q9BZE3 327 aa10.17□□□□□ -0.78
VPS4A-201ENST00000254950 MGAT4CQ9UBM8 478 aa10.17□□□□□ -0.78
VPS4A-201ENST00000254950 KCNS2Q9ULS6 477 aa10.17□□□□□ -0.78
VPS4A-201ENST00000254950 C13orf42A0A1B0GVH6 325 aa10.17□□□□□ -0.78
VPS4A-201ENST00000254950 A8MV72 311 aaPredicted RBP10.17□□□□□ -0.78
VPS4A-201ENST00000254950 CSF3P09919 207 aa10.17□□□□□ -0.78
VPS4A-201ENST00000254950 FXYD4P59646 89 aa10.17□□□□□ -0.78
VPS4A-201ENST00000254950 RBMS2Q15434 407 aaKnown RBP10.17□□□□□ -0.78
VPS4A-201ENST00000254950 PLEKHN1Q494U1 663 aaPredicted RBP10.17□□□□□ -0.78
VPS4A-201ENST00000254950 MDS2Q8NDY4 140 aa10.17□□□□□ -0.78
VPS4A-201ENST00000254950 TP53TG5Q9Y2B4 290 aa10.17□□□□□ -0.78
VPS4A-201ENST00000254950 PCDHGA9Q9Y5G4 932 aaKnown RBP10.17□□□□□ -0.78
VPS4A-201ENST00000254950 CEP192Q8TEP8 1941 aa10.16□□□□□ -0.78
VPS4A-201ENST00000254950 IGKV1D-43A0A0B4J1Z2 117 aa10.16□□□□□ -0.78
VPS4A-201ENST00000254950 ANGPTL7O43827 346 aa10.16□□□□□ -0.78
VPS4A-201ENST00000254950 GABRA2P47869 451 aa10.16□□□□□ -0.78
VPS4A-201ENST00000254950 PPP1CBP62140 327 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 111.6 ms