RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 UCP3P55916 312 aa13.08□□□□□ -0.32
PTPRA-201ENST00000216877 ERVS71-1P61550 626 aa13.08□□□□□ -0.32
PTPRA-201ENST00000216877 CSNK2A1P68400 391 aaPredicted RBP13.08□□□□□ -0.32
PTPRA-201ENST00000216877 TLE4Q04727 773 aa13.08□□□□□ -0.32
PTPRA-201ENST00000216877 SLC8B1Q6J4K2 584 aa13.08□□□□□ -0.32
PTPRA-201ENST00000216877 SLC16A9Q7RTY1 509 aa13.08□□□□□ -0.32
PTPRA-201ENST00000216877 CSNK2A3Q8NEV1 391 aa13.08□□□□□ -0.32
PTPRA-201ENST00000216877 OR2L8Q8NGY9 312 aa13.08□□□□□ -0.32
PTPRA-201ENST00000216877 GPR119Q8TDV5 335 aa13.08□□□□□ -0.32
PTPRA-201ENST00000216877 RNF128Q8TEB7 428 aa13.08□□□□□ -0.32
PTPRA-201ENST00000216877 IL22RA2Q969J5 263 aa13.08□□□□□ -0.32
PTPRA-201ENST00000216877 WDR34Q96EX3 536 aa13.08□□□□□ -0.32
PTPRA-201ENST00000216877 SLC26A1Q9H2B4 701 aa13.08□□□□□ -0.32
PTPRA-201ENST00000216877 RAB18Q9NP72 206 aa13.08□□□□□ -0.32
PTPRA-201ENST00000216877 C14orf166Q9Y224 244 aaKnown RBP13.08□□□□□ -0.32
PTPRA-201ENST00000216877 KCNK6Q9Y257 313 aa13.08□□□□□ -0.32
PTPRA-201ENST00000216877 PPIAL4AQ9Y536 164 aa13.08□□□□□ -0.32
PTPRA-201ENST00000216877 B3GALT1Q9Y5Z6 326 aa13.08□□□□□ -0.32
PTPRA-201ENST00000216877 V9GYS6 101 aa13.08□□□□□ -0.32
PTPRA-201ENST00000216877 C20orf202A1L168 122 aa13.08□□□□□ -0.32
PTPRA-201ENST00000216877 RRP8O43159 456 aaKnown RBP13.08□□□□□ -0.32
PTPRA-201ENST00000216877 IL2RAP01589 272 aa13.08□□□□□ -0.32
PTPRA-201ENST00000216877 SLC6A9P48067 706 aa13.08□□□□□ -0.32
PTPRA-201ENST00000216877 SRSF4Q08170 494 aaKnown RBP13.08□□□□□ -0.32
PTPRA-201ENST00000216877 DEFB134Q4QY38 66 aa13.08□□□□□ -0.32
PTPRA-201ENST00000216877 CDCP2Q5VXM1 449 aa13.08□□□□□ -0.32
PTPRA-201ENST00000216877 SLC48A1Q6P1K1 146 aa13.08□□□□□ -0.32
PTPRA-201ENST00000216877 LRRC25Q8N386 305 aaPredicted RBP13.08□□□□□ -0.32
PTPRA-201ENST00000216877 EXD3Q8N9H8 876 aa13.08□□□□□ -0.32
PTPRA-201ENST00000216877 TOMM40LQ969M1 308 aa13.08□□□□□ -0.32
PTPRA-201ENST00000216877 DCBLD2Q96PD2 775 aa13.08□□□□□ -0.32
PTPRA-201ENST00000216877 KLF16Q9BXK1 252 aaPredicted RBP13.08□□□□□ -0.32
PTPRA-201ENST00000216877 BANF2Q9H503 90 aa13.08□□□□□ -0.32
PTPRA-201ENST00000216877 EHFQ9NZC4 300 aa13.08□□□□□ -0.32
PTPRA-201ENST00000216877 B9D1Q9UPM9 204 aa13.08□□□□□ -0.32
PTPRA-201ENST00000216877 PAM16Q9Y3D7 125 aa13.08□□□□□ -0.32
PTPRA-201ENST00000216877 NLRC5Q86WI3 1866 aa13.07□□□□□ -0.32
PTPRA-201ENST00000216877 HLA-GP17693 338 aa13.07□□□□□ -0.32
PTPRA-201ENST00000216877 AKT2P31751 481 aa13.07□□□□□ -0.32
PTPRA-201ENST00000216877 EMP2P54851 167 aa13.07□□□□□ -0.32
PTPRA-201ENST00000216877 ERVFC1-1P60608 527 aa13.07□□□□□ -0.32
PTPRA-201ENST00000216877 DEGS2Q6QHC5 323 aa13.07□□□□□ -0.32
PTPRA-201ENST00000216877 ZNF100Q8IYN0 542 aa13.07□□□□□ -0.32
PTPRA-201ENST00000216877 SDSLQ96GA7 329 aa13.07□□□□□ -0.32
PTPRA-201ENST00000216877 ADAM19Q9H013 955 aa13.07□□□□□ -0.32
PTPRA-201ENST00000216877 ZNF701Q9NV72 531 aaPredicted RBP13.07□□□□□ -0.32
PTPRA-201ENST00000216877 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.07□□□□□ -0.32
PTPRA-201ENST00000216877 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.07□□□□□ -0.32
PTPRA-201ENST00000216877 ZNF708P17019 499 aa13.07□□□□□ -0.32
PTPRA-201ENST00000216877 CDK3Q00526 305 aa13.07□□□□□ -0.32
PTPRA-201ENST00000216877 ZAR1Q86SH2 424 aa13.07□□□□□ -0.32
PTPRA-201ENST00000216877 AMZ2Q86W34 360 aa13.07□□□□□ -0.32
PTPRA-201ENST00000216877 KREMEN2Q8NCW0 462 aa13.07□□□□□ -0.32
PTPRA-201ENST00000216877 OR1P1Q8NH06 330 aa13.07□□□□□ -0.32
PTPRA-201ENST00000216877 RNASE8Q8TDE3 154 aaKnown RBP13.07□□□□□ -0.32
PTPRA-201ENST00000216877 TMEM18Q96B42 140 aa13.07□□□□□ -0.32
PTPRA-201ENST00000216877 C5orf34Q96MH7 638 aa13.07□□□□□ -0.32
PTPRA-201ENST00000216877 PARD6AQ9NPB6 346 aa13.07□□□□□ -0.32
PTPRA-201ENST00000216877 SERINC1Q9NRX5 453 aa13.07□□□□□ -0.32
PTPRA-201ENST00000216877 GNG13Q9P2W3 67 aa13.07□□□□□ -0.32
PTPRA-201ENST00000216877 AK3Q9UIJ7 227 aa13.07□□□□□ -0.32
PTPRA-201ENST00000216877 CCDC187A0A096LP49 1063 aa13.06□□□□□ -0.32
PTPRA-201ENST00000216877 A0A0A6YYD5 115 aa13.06□□□□□ -0.32
PTPRA-201ENST00000216877 METTL15P1P0C7V9 234 aa13.06□□□□□ -0.32
PTPRA-201ENST00000216877 PNLIPP16233 465 aa13.06□□□□□ -0.32
PTPRA-201ENST00000216877 RND3P61587 244 aa13.06□□□□□ -0.32
PTPRA-201ENST00000216877 CSNK1G2P78368 415 aa13.06□□□□□ -0.32
PTPRA-201ENST00000216877 ZNF774Q6NX45 483 aa13.06□□□□□ -0.32
PTPRA-201ENST00000216877 RCBTB1Q8NDN9 531 aa13.06□□□□□ -0.32
PTPRA-201ENST00000216877 GPER1Q99527 375 aa13.06□□□□□ -0.32
PTPRA-201ENST00000216877 C5orf66Q9H5L9 145 aa13.06□□□□□ -0.32
PTPRA-201ENST00000216877 RP1L1Q8IWN7 2480 aaPredicted RBP13.06□□□□□ -0.32
PTPRA-201ENST00000216877 ZNF205O95201 554 aa13.06□□□□□ -0.32
PTPRA-201ENST00000216877 TOMM20LQ6UXN7 152 aa13.06□□□□□ -0.32
PTPRA-201ENST00000216877 RAB42Q8N4Z0 105 aa13.06□□□□□ -0.32
PTPRA-201ENST00000216877 SUMF1Q8NBK3 374 aa13.06□□□□□ -0.32
PTPRA-201ENST00000216877 OR4D6Q8NGJ1 314 aa13.06□□□□□ -0.32
PTPRA-201ENST00000216877 C4orf45Q96LM5 186 aa13.06□□□□□ -0.32
PTPRA-201ENST00000216877 FKBP11Q9NYL4 201 aa13.06□□□□□ -0.32
PTPRA-201ENST00000216877 YBX2Q9Y2T7 364 aaKnown RBP13.06□□□□□ -0.32
PTPRA-201ENST00000216877 TRBV6-7A0A0A0MS04 114 aa13.06□□□□□ -0.32
PTPRA-201ENST00000216877 GPR89AB7ZAQ6 455 aa13.06□□□□□ -0.32
PTPRA-201ENST00000216877 GPR89BP0CG08 455 aa13.06□□□□□ -0.32
PTPRA-201ENST00000216877 S1PR1P21453 382 aa13.06□□□□□ -0.32
PTPRA-201ENST00000216877 NTHL1P78549 312 aa13.06□□□□□ -0.32
PTPRA-201ENST00000216877 DUSP8Q13202 625 aa13.06□□□□□ -0.32
PTPRA-201ENST00000216877 GRASPQ7Z6J2 395 aaPredicted RBP13.06□□□□□ -0.32
PTPRA-201ENST00000216877 TMEM183AQ8IXX5 376 aa13.06□□□□□ -0.32
PTPRA-201ENST00000216877 TMEM217Q8N7C4 229 aa13.06□□□□□ -0.32
PTPRA-201ENST00000216877 IGSF21Q96ID5 467 aa13.06□□□□□ -0.32
PTPRA-201ENST00000216877 SLC7A11Q9UPY5 501 aa13.06□□□□□ -0.32
PTPRA-201ENST00000216877 TRBV5-5A0A0J9YX44 114 aa13.05□□□□□ -0.32
PTPRA-201ENST00000216877 A0A1W2PPQ1 181 aa13.05□□□□□ -0.32
PTPRA-201ENST00000216877 CLDN34H7C241 214 aa13.05□□□□□ -0.32
PTPRA-201ENST00000216877 PLRG1O43660 514 aaKnown RBP13.05□□□□□ -0.32
PTPRA-201ENST00000216877 DANCRP0C864 163 aa13.05□□□□□ -0.32
PTPRA-201ENST00000216877 BCL6P41182 706 aa13.05□□□□□ -0.32
PTPRA-201ENST00000216877 KIR3DL2P43630 455 aa13.05□□□□□ -0.32
PTPRA-201ENST00000216877 BTG2P78543 158 aa13.05□□□□□ -0.32
PTPRA-201ENST00000216877 COL10A1Q03692 680 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms