RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 RUFY1Q96T51 708 aa5.79□□□□□ -1.48
SCN1A-218ENST00000640036 HTATIP2Q9BUP3 242 aa5.79□□□□□ -1.48
SCN1A-218ENST00000640036 CYP46A1Q9Y6A2 500 aa5.79□□□□□ -1.48
SCN1A-218ENST00000640036 USP17L8P0C7I0 530 aa5.79□□□□□ -1.48
SCN1A-218ENST00000640036 MAP2K1Q02750 393 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-218ENST00000640036 C22orf23Q9BZE7 217 aa5.79□□□□□ -1.48
SCN1A-218ENST00000640036 SNRKQ9NRH2 765 aa5.79□□□□□ -1.48
SCN1A-218ENST00000640036 COMMD10Q9Y6G5 202 aa5.79□□□□□ -1.48
SCN1A-218ENST00000640036 OVOS2A0A0G2JMS6 1433 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 OVOS2A0A0J9YW53 1432 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 OVOS2Q6IE36 1432 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 USP17L3A6NCW0 530 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 USP17L4A6NCW7 530 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 HMGN5P82970 282 aaKnown RBP5.78□□□□□ -1.48
SCN1A-218ENST00000640036 EZH2Q15910 746 aaKnown RBP5.78□□□□□ -1.48
SCN1A-218ENST00000640036 FOXD4L5Q5VV16 416 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-218ENST00000640036 KSR2Q6VAB6 950 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 USP17L1Q7RTZ2 530 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 CDAN1Q8IWY9 1227 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 TNS4Q8IZW8 715 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 HELBQ8NG08 1087 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-218ENST00000640036 FOXD4L4Q8WXT5 416 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-218ENST00000640036 KRT23Q9C075 422 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 SLC52A2Q9HAB3 445 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 NOB1Q9ULX3 412 aaKnown RBP5.78□□□□□ -1.48
SCN1A-218ENST00000640036 SPATA31A3Q5VYP0 1347 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 SOCS7O14512 581 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 CRKLP46109 303 aaKnown RBP5.78□□□□□ -1.48
SCN1A-218ENST00000640036 NSMFQ6X4W1 530 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 ADAMTS8Q9UP79 889 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 SLC4A4Q9Y6R1 1079 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 PTPRCP08575 1304 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 NBPF7P0C2Y1 421 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-218ENST00000640036 USP14P54578 494 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 TAF1CQ15572 869 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-218ENST00000640036 GCC1Q96CN9 775 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 PKNOX2Q96KN3 472 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 USP40Q9NVE5 1235 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 CHPF2Q9P2E5 772 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 ADD3Q9UEY8 706 aaKnown RBP5.78□□□□□ -1.48
SCN1A-218ENST00000640036 MAP3K19Q56UN5 1328 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 PTPRMP28827 1452 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 MAP3K5Q99683 1374 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 PLEKHG3A1L390 1219 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 SSR1P43307 286 aaKnown RBP5.78□□□□□ -1.48
SCN1A-218ENST00000640036 STK38Q15208 465 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 IFIT1BQ5T764 474 aaKnown RBP5.78□□□□□ -1.48
SCN1A-218ENST00000640036 FAM89AQ96GI7 184 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 PHAXQ9H814 394 aaKnown RBP5.78□□□□□ -1.48
SCN1A-218ENST00000640036 ORC3Q9UBD5 711 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-218ENST00000640036 A2ML1A8K2U0 1454 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 BCAR3O75815 825 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 SRGAP2BP0DMP2 458 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 CHST3Q7LGC8 479 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 IL1RAPL2Q9NP60 686 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 TCP11L1Q9NUJ3 509 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 GOLIM4O00461 696 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 TNPO2O14787 897 aaKnown RBP5.78□□□□□ -1.48
SCN1A-218ENST00000640036 A1BGP04217 495 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 CALM1P0DP23 149 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 CALM2P0DP24 149 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 CALM3P0DP25 149 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 TMOD1P28289 359 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 RPAP2Q8IXW5 612 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-218ENST00000640036 CALML4Q96GE6 196 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 KIF7Q2M1P5 1343 aa5.78□□□□□ -1.48
SCN1A-218ENST00000640036 NUP153P49790 1475 aaKnown RBP5.78□□□□□ -1.48
SCN1A-218ENST00000640036 SAMD9Q5K651 1589 aa5.77□□□□□ -1.48
SCN1A-218ENST00000640036 HECW2Q9P2P5 1572 aa5.77□□□□□ -1.48
SCN1A-218ENST00000640036 C9orf131Q5VYM1 1079 aa5.77□□□□□ -1.48
SCN1A-218ENST00000640036 RNF169Q8NCN4 708 aa5.77□□□□□ -1.48
SCN1A-218ENST00000640036 ERCC4Q92889 916 aaPredicted RBP5.77□□□□□ -1.48
SCN1A-218ENST00000640036 UIMC1Q96RL1 719 aa5.77□□□□□ -1.48
SCN1A-218ENST00000640036 PRKRIP1Q9H875 184 aaPredicted RBP5.77□□□□□ -1.48
SCN1A-218ENST00000640036 MLXIPQ9HAP2 919 aa5.77□□□□□ -1.48
SCN1A-218ENST00000640036 FOXD4L6Q3SYB3 417 aaPredicted RBP5.77□□□□□ -1.49
SCN1A-218ENST00000640036 FOXD4L3Q6VB84 417 aaPredicted RBP5.77□□□□□ -1.49
SCN1A-218ENST00000640036 FASTKD5Q7L8L6 764 aaKnown RBP5.77□□□□□ -1.49
SCN1A-218ENST00000640036 MICALL1Q8N3F8 863 aa5.77□□□□□ -1.49
SCN1A-218ENST00000640036 PLBD2Q8NHP8 589 aa5.77□□□□□ -1.49
SCN1A-218ENST00000640036 LEMD3Q9Y2U8 911 aa5.77□□□□□ -1.49
SCN1A-218ENST00000640036 RBM19Q9Y4C8 960 aaKnown RBP5.77□□□□□ -1.49
SCN1A-218ENST00000640036 MAGI3Q5TCQ9 1506 aa5.77□□□□□ -1.49
SCN1A-218ENST00000640036 EIF4E1BA6NMX2 242 aaKnown RBP5.77□□□□□ -1.49
SCN1A-218ENST00000640036 CELF2O95319 508 aaKnown RBP5.77□□□□□ -1.49
SCN1A-218ENST00000640036 ALDH1A1P00352 501 aa5.77□□□□□ -1.49
SCN1A-218ENST00000640036 SYNE4Q8N205 404 aa5.77□□□□□ -1.49
SCN1A-218ENST00000640036 CNNM2Q9H8M5 875 aa5.77□□□□□ -1.49
SCN1A-218ENST00000640036 EPB41L2O43491 1005 aaKnown RBP5.77□□□□□ -1.49
SCN1A-218ENST00000640036 ANXA1P04083 346 aa5.77□□□□□ -1.49
SCN1A-218ENST00000640036 IL6STP40189 918 aaPredicted RBP5.77□□□□□ -1.49
SCN1A-218ENST00000640036 PUM3Q15397 648 aaKnown RBP5.77□□□□□ -1.49
SCN1A-218ENST00000640036 PPM1EQ8WY54 764 aa5.77□□□□□ -1.49
SCN1A-218ENST00000640036 JARID2Q92833 1246 aaPredicted RBP5.77□□□□□ -1.49
SCN1A-218ENST00000640036 FGFR1OPO95684 399 aaKnown RBP5.77□□□□□ -1.49
SCN1A-218ENST00000640036 CCDC102AQ96A19 550 aa5.77□□□□□ -1.49
SCN1A-218ENST00000640036 PUS7Q96PZ0 661 aaKnown RBP5.77□□□□□ -1.49
SCN1A-218ENST00000640036 GCNAQ96QF7 691 aa5.77□□□□□ -1.49
SCN1A-218ENST00000640036 EYA1Q99502 592 aa5.77□□□□□ -1.49
SCN1A-218ENST00000640036 CCDC8Q9H0W5 538 aaPredicted RBP5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms