RNA–Protein interactions for RNA: ENST00000639702.1

RBM39-245, Transcript of RNA binding motif protein 39, human

TSL 5

Gene RBM39, Length 5,914 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-245	ENST00000639702	MTHFSD	Q2M296	383 aa	Known RBP	13.93	□□□□□ -0.18
RBM39-245	ENST00000639702	LRRC59	Q96AG4	307 aa	Known RBP	13.93	□□□□□ -0.18
RBM39-245	ENST00000639702	SPAG5	Q96R06	1193 aa		13.93	□□□□□ -0.18
RBM39-245	ENST00000639702	TRMT1	Q9NXH9	659 aa	Known RBP	13.93	□□□□□ -0.18
RBM39-245	ENST00000639702	AKR1B10	O60218	316 aa		13.93	□□□□□ -0.18
RBM39-245	ENST00000639702	TNNI2	P48788	182 aa		13.93	□□□□□ -0.18
RBM39-245	ENST00000639702	UBASH3A	P57075	661 aa		13.93	□□□□□ -0.18
RBM39-245	ENST00000639702	HOMER2	Q9NSB8	354 aa		13.93	□□□□□ -0.18
RBM39-245	ENST00000639702	BABAM1	Q9NWV8	329 aa		13.93	□□□□□ -0.18
RBM39-245	ENST00000639702	RASAL2	Q9UJF2	1139 aa		13.93	□□□□□ -0.18
RBM39-245	ENST00000639702	BICDL2	A1A5D9	508 aa		13.93	□□□□□ -0.18
RBM39-245	ENST00000639702	NMI	Q13287	307 aa	Predicted RBP	13.93	□□□□□ -0.18
RBM39-245	ENST00000639702	JADE2	Q9NQC1	790 aa		13.93	□□□□□ -0.18
RBM39-245	ENST00000639702	TUBB4A	P04350	444 aa		13.92	□□□□□ -0.18
RBM39-245	ENST00000639702	CCDC175	P0C221	793 aa		13.92	□□□□□ -0.18
RBM39-245	ENST00000639702	LRSAM1	Q6UWE0	723 aa		13.92	□□□□□ -0.18
RBM39-245	ENST00000639702	LMBR1	Q8WVP7	490 aa		13.92	□□□□□ -0.18
RBM39-245	ENST00000639702	SH2D4A	Q9H788	454 aa		13.92	□□□□□ -0.18
RBM39-245	ENST00000639702	IKBKG	Q9Y6K9	419 aa		13.92	□□□□□ -0.18
RBM39-245	ENST00000639702	EIF4G3	O43432	1585 aa	Known RBP	13.92	□□□□□ -0.18
RBM39-245	ENST00000639702	TRIM75P	A6NK02	468 aa		13.92	□□□□□ -0.18
RBM39-245	ENST00000639702	FER	P16591	822 aa		13.92	□□□□□ -0.18
RBM39-245	ENST00000639702	GNA11	P29992	359 aa		13.92	□□□□□ -0.18
RBM39-245	ENST00000639702	SSX2IP	Q9Y2D8	614 aa		13.92	□□□□□ -0.18
RBM39-245	ENST00000639702		F8W031	263 aa	Predicted RBP	13.92	□□□□□ -0.18
RBM39-245	ENST00000639702	JDP2	Q8WYK2	163 aa		13.92	□□□□□ -0.18
RBM39-245	ENST00000639702	GDPD2	Q9HCC8	539 aa		13.92	□□□□□ -0.18
RBM39-245	ENST00000639702	KRT79	Q5XKE5	535 aa		13.92	□□□□□ -0.18
RBM39-245	ENST00000639702	DENND2A	Q9ULE3	1009 aa		13.92	□□□□□ -0.18
RBM39-245	ENST00000639702	LDHB	P07195	334 aa	Known RBP	13.92	□□□□□ -0.18
RBM39-245	ENST00000639702	CTR9	Q6PD62	1173 aa		13.92	□□□□□ -0.18
RBM39-245	ENST00000639702	C8orf58	Q8NAV2	365 aa		13.92	□□□□□ -0.18
RBM39-245	ENST00000639702	PPM1E	Q8WY54	764 aa		13.92	□□□□□ -0.18
RBM39-245	ENST00000639702	FMNL3	Q8IVF7	1028 aa		13.91	□□□□□ -0.18
RBM39-245	ENST00000639702	SNX21	Q969T3	373 aa		13.91	□□□□□ -0.18
RBM39-245	ENST00000639702	SHANK2	Q9UPX8	1470 aa		13.91	□□□□□ -0.18
RBM39-245	ENST00000639702	ASIC1	P78348	528 aa		13.91	□□□□□ -0.18
RBM39-245	ENST00000639702	SPECC1L	Q69YQ0	1117 aa		13.91	□□□□□ -0.18
RBM39-245	ENST00000639702	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	13.91	□□□□□ -0.18
RBM39-245	ENST00000639702	CCDC155	Q8N6L0	562 aa		13.91	□□□□□ -0.18
RBM39-245	ENST00000639702	POLK	Q9UBT6	870 aa		13.91	□□□□□ -0.18
RBM39-245	ENST00000639702	AFM	P43652	599 aa		13.91	□□□□□ -0.18
RBM39-245	ENST00000639702	NECAB1	Q8N987	351 aa		13.91	□□□□□ -0.18
RBM39-245	ENST00000639702	ZSCAN23	Q3MJ62	389 aa		13.91	□□□□□ -0.18
RBM39-245	ENST00000639702	CEP135	Q66GS9	1140 aa		13.91	□□□□□ -0.18
RBM39-245	ENST00000639702	CEP112	Q8N8E3	955 aa		13.91	□□□□□ -0.18
RBM39-245	ENST00000639702	HELLS	Q9NRZ9	838 aa		13.91	□□□□□ -0.18
RBM39-245	ENST00000639702	PIK3C2G	O75747	1445 aa		13.91	□□□□□ -0.18
RBM39-245	ENST00000639702	RNMT	O43148	476 aa	Known RBP	13.91	□□□□□ -0.18
RBM39-245	ENST00000639702	UBE4A	Q14139	1066 aa		13.91	□□□□□ -0.18
RBM39-245	ENST00000639702	YTHDC2	Q9H6S0	1430 aa	Known RBP	13.91	□□□□□ -0.18
RBM39-245	ENST00000639702	GRIPAP1	Q4V328	841 aa		13.9	□□□□□ -0.18
RBM39-245	ENST00000639702	BRAP	Q7Z569	592 aa		13.9	□□□□□ -0.18
RBM39-245	ENST00000639702	CERS3	Q8IU89	383 aa		13.9	□□□□□ -0.18
RBM39-245	ENST00000639702	MSANTD4	Q8NCY6	345 aa		13.9	□□□□□ -0.18
RBM39-245	ENST00000639702	IP6K1	Q92551	441 aa		13.9	□□□□□ -0.18
RBM39-245	ENST00000639702	C16orf45	Q96MC5	204 aa	Predicted RBP	13.9	□□□□□ -0.18
RBM39-245	ENST00000639702	PARD3	Q8TEW0	1356 aa		13.9	□□□□□ -0.18
RBM39-245	ENST00000639702	HSF2BP	O75031	334 aa		13.9	□□□□□ -0.18
RBM39-245	ENST00000639702	FAM13A	O94988	1023 aa		13.9	□□□□□ -0.18
RBM39-245	ENST00000639702	MAGEB6	Q8N7X4	407 aa		13.9	□□□□□ -0.18
RBM39-245	ENST00000639702	MMRN2	Q9H8L6	949 aa		13.9	□□□□□ -0.18
RBM39-245	ENST00000639702	TFCP2L1	Q9NZI6	479 aa		13.9	□□□□□ -0.18
RBM39-245	ENST00000639702	F13A1	P00488	732 aa		13.9	□□□□□ -0.18
RBM39-245	ENST00000639702	PARP10	Q53GL7	1025 aa		13.9	□□□□□ -0.18
RBM39-245	ENST00000639702	TRMT1L	Q7Z2T5	733 aa	Known RBP	13.9	□□□□□ -0.18
RBM39-245	ENST00000639702	MAATS1	Q7Z4T9	603 aa		13.9	□□□□□ -0.18
RBM39-245	ENST00000639702	NFATC2IP	Q8NCF5	419 aa		13.9	□□□□□ -0.18
RBM39-245	ENST00000639702	CLEC11A	Q9Y240	323 aa		13.9	□□□□□ -0.18
RBM39-245	ENST00000639702	TTC6	Q86TZ1	520 aa		13.9	□□□□□ -0.18
RBM39-245	ENST00000639702	MCM9	Q9NXL9	1143 aa		13.89	□□□□□ -0.19
RBM39-245	ENST00000639702	NUP153	P49790	1475 aa	Known RBP	13.89	□□□□□ -0.19
RBM39-245	ENST00000639702	VEZT	Q9HBM0	779 aa		13.89	□□□□□ -0.19
RBM39-245	ENST00000639702	TCOF1	Q13428	1488 aa	Known RBP	13.89	□□□□□ -0.19
RBM39-245	ENST00000639702	ATL3	Q6DD88	541 aa		13.89	□□□□□ -0.19
RBM39-245	ENST00000639702	RTL1	A6NKG5	1358 aa		13.89	□□□□□ -0.19
RBM39-245	ENST00000639702	GNG11	P61952	73 aa		13.89	□□□□□ -0.19
RBM39-245	ENST00000639702	KRT83	P78385	493 aa		13.89	□□□□□ -0.19
RBM39-245	ENST00000639702	ISM2	Q6H9L7	571 aa		13.89	□□□□□ -0.19
RBM39-245	ENST00000639702	HOXC9	P31274	260 aa		13.89	□□□□□ -0.19
RBM39-245	ENST00000639702	TMX1	Q9H3N1	280 aa		13.89	□□□□□ -0.19
RBM39-245	ENST00000639702	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	13.89	□□□□□ -0.19
RBM39-245	ENST00000639702	ERICH4	A6NGS2	130 aa		13.88	□□□□□ -0.19
RBM39-245	ENST00000639702	SPTLC2	O15270	562 aa		13.88	□□□□□ -0.19
RBM39-245	ENST00000639702	PPP1R2	P41236	205 aa		13.88	□□□□□ -0.19
RBM39-245	ENST00000639702	TRAPPC3L	Q5T215	181 aa		13.88	□□□□□ -0.19
RBM39-245	ENST00000639702	KIAA0556	O60303	1618 aa		13.88	□□□□□ -0.19
RBM39-245	ENST00000639702	TACC1	O75410	805 aa		13.88	□□□□□ -0.19
RBM39-245	ENST00000639702	LMOD1	P29536	600 aa	Predicted RBP	13.88	□□□□□ -0.19
RBM39-245	ENST00000639702	CEP85	Q6P2H3	762 aa		13.88	□□□□□ -0.19
RBM39-245	ENST00000639702	FAM200A	Q8TCP9	573 aa		13.88	□□□□□ -0.19
RBM39-245	ENST00000639702	VTI1A	Q96AJ9	217 aa		13.88	□□□□□ -0.19
RBM39-245	ENST00000639702	PRIMPOL	Q96LW4	560 aa		13.88	□□□□□ -0.19
RBM39-245	ENST00000639702	DCTPP1	Q9H773	170 aa		13.88	□□□□□ -0.19
RBM39-245	ENST00000639702	MAST3	O60307	1309 aa		13.88	□□□□□ -0.19
RBM39-245	ENST00000639702	GC	P02774	474 aa		13.88	□□□□□ -0.19
RBM39-245	ENST00000639702	TFCP2	Q12800	502 aa		13.88	□□□□□ -0.19
RBM39-245	ENST00000639702	ANO6	Q4KMQ2	910 aa		13.88	□□□□□ -0.19
RBM39-245	ENST00000639702	STMN4	Q9H169	189 aa	Predicted RBP	13.88	□□□□□ -0.19
RBM39-245	ENST00000639702	CNPY2	Q9Y2B0	182 aa		13.88	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms