RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 GMLQ99445 158 aa19.33■□□□□ 0.68
SYNE2-228ENST00000639659 ZNF609O15014 1411 aa19.33■□□□□ 0.68
SYNE2-228ENST00000639659 PITPNM2Q9BZ72 1349 aa19.32■□□□□ 0.68
SYNE2-228ENST00000639659 SASH1O94885 1247 aa19.32■□□□□ 0.68
SYNE2-228ENST00000639659 CCDC30Q5VVM6 783 aa19.32■□□□□ 0.68
SYNE2-228ENST00000639659 OGFOD1Q8N543 542 aa19.32■□□□□ 0.68
SYNE2-228ENST00000639659 GREM2Q9H772 168 aa19.32■□□□□ 0.68
SYNE2-228ENST00000639659 MED23Q9ULK4 1368 aa19.32■□□□□ 0.68
SYNE2-228ENST00000639659 MYH3P11055 1940 aa19.31■□□□□ 0.68
SYNE2-228ENST00000639659 NF2P35240 595 aa19.31■□□□□ 0.68
SYNE2-228ENST00000639659 REM2Q8IYK8 340 aaPredicted RBP19.31■□□□□ 0.68
SYNE2-228ENST00000639659 PDE4DIPQ5VU43 2346 aa19.31■□□□□ 0.68
SYNE2-228ENST00000639659 NEXNQ0ZGT2 675 aa19.3■□□□□ 0.68
SYNE2-228ENST00000639659 CWF19L2Q2TBE0 894 aaKnown RBP19.3■□□□□ 0.68
SYNE2-228ENST00000639659 MINPP1Q9UNW1 487 aa19.3■□□□□ 0.68
SYNE2-228ENST00000639659 HPS5Q9UPZ3 1129 aa19.3■□□□□ 0.68
SYNE2-228ENST00000639659 PI4KAP2A4QPH2 592 aa19.29■□□□□ 0.68
SYNE2-228ENST00000639659 CCT4P50991 539 aaKnown RBP19.29■□□□□ 0.68
SYNE2-228ENST00000639659 TSPYL6Q8N831 410 aa19.29■□□□□ 0.68
SYNE2-228ENST00000639659 PI4KAP1Q8N8J0 262 aa19.29■□□□□ 0.68
SYNE2-228ENST00000639659 TTLL11Q8NHH1 800 aa19.29■□□□□ 0.68
SYNE2-228ENST00000639659 ZNF296Q8WUU4 475 aaPredicted RBP19.29■□□□□ 0.68
SYNE2-228ENST00000639659 IGKV5-2P06315 115 aa19.28■□□□□ 0.68
SYNE2-228ENST00000639659 IGHMBP2P38935 993 aaKnown RBP19.28■□□□□ 0.68
SYNE2-228ENST00000639659 DACT2Q5SW24 774 aa19.28■□□□□ 0.68
SYNE2-228ENST00000639659 UBE3BQ7Z3V4 1068 aa19.28■□□□□ 0.68
SYNE2-228ENST00000639659 TSR2Q969E8 191 aaKnown RBP19.28■□□□□ 0.68
SYNE2-228ENST00000639659 STK31Q9BXU1 1019 aa19.28■□□□□ 0.68
SYNE2-228ENST00000639659 BSDC1Q9NW68 430 aaPredicted RBP19.28■□□□□ 0.68
SYNE2-228ENST00000639659 WNT10BO00744 389 aa19.27■□□□□ 0.68
SYNE2-228ENST00000639659 KCNJ4P48050 445 aa19.27■□□□□ 0.68
SYNE2-228ENST00000639659 KSR2Q6VAB6 950 aa19.27■□□□□ 0.68
SYNE2-228ENST00000639659 KIAA0825Q8IV33 1275 aa19.27■□□□□ 0.68
SYNE2-228ENST00000639659 MYO3BQ8WXR4 1341 aa19.26■□□□□ 0.67
SYNE2-228ENST00000639659 KLRK1P26718 216 aa19.26■□□□□ 0.67
SYNE2-228ENST00000639659 TXNRD3Q86VQ6 643 aa19.26■□□□□ 0.67
SYNE2-228ENST00000639659 COA1Q9GZY4 146 aa19.26■□□□□ 0.67
SYNE2-228ENST00000639659 ZNF646O15015 1829 aaPredicted RBP19.25■□□□□ 0.67
SYNE2-228ENST00000639659 STRIP1Q5VSL9 837 aa19.25■□□□□ 0.67
SYNE2-228ENST00000639659 TTLL5Q6EMB2 1281 aa19.25■□□□□ 0.67
SYNE2-228ENST00000639659 ARMC9Q7Z3E5 817 aa19.25■□□□□ 0.67
SYNE2-228ENST00000639659 CHMP4AQ9BY43 222 aa19.25■□□□□ 0.67
SYNE2-228ENST00000639659 PRKRIP1Q9H875 184 aaPredicted RBP19.25■□□□□ 0.67
SYNE2-228ENST00000639659 FZD1Q9UP38 647 aa19.25■□□□□ 0.67
SYNE2-228ENST00000639659 NEURL1BA8MQ27 555 aa19.24■□□□□ 0.67
SYNE2-228ENST00000639659 GPR25O00155 361 aa19.24■□□□□ 0.67
SYNE2-228ENST00000639659 GTF2IP78347 998 aa19.24■□□□□ 0.67
SYNE2-228ENST00000639659 PTPN12Q05209 780 aaKnown RBP19.24■□□□□ 0.67
SYNE2-228ENST00000639659 SREBF2Q12772 1141 aa19.24■□□□□ 0.67
SYNE2-228ENST00000639659 MPHOSPH8Q99549 860 aa19.24■□□□□ 0.67
SYNE2-228ENST00000639659 ANGEL1Q9UNK9 670 aaKnown RBP19.24■□□□□ 0.67
SYNE2-228ENST00000639659 ZNF804BA4D1E1 1349 aa19.24■□□□□ 0.67
SYNE2-228ENST00000639659 ITGA6P23229 1130 aa19.23■□□□□ 0.67
SYNE2-228ENST00000639659 PKN2Q16513 984 aaKnown RBP19.23■□□□□ 0.67
SYNE2-228ENST00000639659 APOBEC3FQ8IUX4 373 aaKnown RBP19.23■□□□□ 0.67
SYNE2-228ENST00000639659 LEMD3Q9Y2U8 911 aa19.23■□□□□ 0.67
SYNE2-228ENST00000639659 G2E3Q7L622 706 aa19.22■□□□□ 0.67
SYNE2-228ENST00000639659 F8W031 263 aaPredicted RBP19.21■□□□□ 0.67
SYNE2-228ENST00000639659 FKTNO75072 461 aa19.21■□□□□ 0.67
SYNE2-228ENST00000639659 TM4SF4P48230 202 aa19.21■□□□□ 0.67
SYNE2-228ENST00000639659 PRPF38BQ5VTL8 546 aaKnown RBP19.21■□□□□ 0.67
SYNE2-228ENST00000639659 ANKRD2Q9GZV1 360 aa19.21■□□□□ 0.67
SYNE2-228ENST00000639659 SLC4A2P04920 1241 aa19.2■□□□□ 0.66
SYNE2-228ENST00000639659 TWISTNBQ3B726 338 aaPredicted RBP19.2■□□□□ 0.66
SYNE2-228ENST00000639659 R3HDMLQ9H3Y0 253 aa19.2■□□□□ 0.66
SYNE2-228ENST00000639659 CHMP3Q9Y3E7 222 aa19.2■□□□□ 0.66
SYNE2-228ENST00000639659 H7C1W4 665 aa19.19■□□□□ 0.66
SYNE2-228ENST00000639659 CHRNDQ07001 517 aa19.19■□□□□ 0.66
SYNE2-228ENST00000639659 FKBP5Q13451 457 aaPredicted RBP19.19■□□□□ 0.66
SYNE2-228ENST00000639659 DLGAP5Q15398 846 aa19.19■□□□□ 0.66
SYNE2-228ENST00000639659 FBXO46Q6PJ61 603 aaPredicted RBP19.19■□□□□ 0.66
SYNE2-228ENST00000639659 SNAP23O00161 211 aa19.18■□□□□ 0.66
SYNE2-228ENST00000639659 GCKRQ14397 625 aa19.18■□□□□ 0.66
SYNE2-228ENST00000639659 SPRYD7Q5W111 196 aa19.18■□□□□ 0.66
SYNE2-228ENST00000639659 HELBQ8NG08 1087 aaPredicted RBP19.18■□□□□ 0.66
SYNE2-228ENST00000639659 JAG2Q9Y219 1238 aa19.18■□□□□ 0.66
SYNE2-228ENST00000639659 CLRN2A0PK11 232 aa19.17■□□□□ 0.66
SYNE2-228ENST00000639659 TAF5LO75529 589 aa19.17■□□□□ 0.66
SYNE2-228ENST00000639659 FLIIQ13045 1269 aa19.17■□□□□ 0.66
SYNE2-228ENST00000639659 SLC10A4Q96EP9 437 aa19.17■□□□□ 0.66
SYNE2-228ENST00000639659 DEFB129Q9H1M3 183 aa19.17■□□□□ 0.66
SYNE2-228ENST00000639659 MYH16Q9H6N6 1097 aa19.17■□□□□ 0.66
SYNE2-228ENST00000639659 VEZTQ9HBM0 779 aa19.17■□□□□ 0.66
SYNE2-228ENST00000639659 CD209Q9NNX6 404 aa19.17■□□□□ 0.66
SYNE2-228ENST00000639659 PCDH10Q9P2E7 1040 aa19.17■□□□□ 0.66
SYNE2-228ENST00000639659 PCDHAC2Q9Y5I4 1007 aa19.17■□□□□ 0.66
SYNE2-228ENST00000639659 ANKRD18BA2A2Z9 1011 aa19.16■□□□□ 0.66
SYNE2-228ENST00000639659 TRIM17Q9Y577 477 aa19.16■□□□□ 0.66
SYNE2-228ENST00000639659 RBM5P52756 815 aaKnown RBP eCLIP19.15■□□□□ 0.66
SYNE2-228ENST00000639659 DNAAF4Q8WXU2 420 aa19.15■□□□□ 0.66
SYNE2-228ENST00000639659 CLMNQ96JQ2 1002 aa19.15■□□□□ 0.66
SYNE2-228ENST00000639659 COL1A1P02452 1464 aaPredicted RBP19.15■□□□□ 0.66
SYNE2-228ENST00000639659 MANSC4A6NHS7 340 aaPredicted RBP19.14■□□□□ 0.65
SYNE2-228ENST00000639659 MYO1BO43795 1136 aa19.14■□□□□ 0.65
SYNE2-228ENST00000639659 PPP1R12BO60237 982 aaPredicted RBP19.14■□□□□ 0.65
SYNE2-228ENST00000639659 PLIN1O60240 522 aa19.14■□□□□ 0.65
SYNE2-228ENST00000639659 ALDH1A1P00352 501 aa19.14■□□□□ 0.65
SYNE2-228ENST00000639659 MMP14P50281 582 aa19.14■□□□□ 0.65
SYNE2-228ENST00000639659 LDLRAD1Q5T700 205 aa19.14■□□□□ 0.65
SYNE2-228ENST00000639659 CERS5Q8N5B7 392 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms