RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 SRP68Q9UHB9 627 aaKnown RBP13.72□□□□□ -0.21
CLN6-217ENST00000636964 EP400Q96L91 3159 aa13.72□□□□□ -0.21
CLN6-217ENST00000636964 GNPATO15228 680 aa13.72□□□□□ -0.21
CLN6-217ENST00000636964 NTSR2O95665 410 aa13.72□□□□□ -0.21
CLN6-217ENST00000636964 TAF5LO75529 589 aa13.72□□□□□ -0.21
CLN6-217ENST00000636964 FOXD4L5Q5VV16 416 aaPredicted RBP13.72□□□□□ -0.21
CLN6-217ENST00000636964 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.72□□□□□ -0.21
CLN6-217ENST00000636964 AMIGO3Q86WK7 504 aa13.72□□□□□ -0.21
CLN6-217ENST00000636964 FOXD4L4Q8WXT5 416 aaPredicted RBP13.72□□□□□ -0.21
CLN6-217ENST00000636964 SLC27A2O14975 620 aa13.71□□□□□ -0.21
CLN6-217ENST00000636964 AK2P54819 239 aa13.71□□□□□ -0.21
CLN6-217ENST00000636964 PARP10Q53GL7 1025 aa13.71□□□□□ -0.21
CLN6-217ENST00000636964 USPL1Q5W0Q7 1092 aa13.71□□□□□ -0.21
CLN6-217ENST00000636964 CCDC24Q8N4L8 307 aa13.71□□□□□ -0.21
CLN6-217ENST00000636964 QTRT2Q9H974 415 aaKnown RBP13.71□□□□□ -0.21
CLN6-217ENST00000636964 MED23Q9ULK4 1368 aa13.71□□□□□ -0.21
CLN6-217ENST00000636964 RIC1Q4ADV7 1423 aa13.71□□□□□ -0.21
CLN6-217ENST00000636964 GOLGB1Q14789 3259 aaKnown RBP13.71□□□□□ -0.21
CLN6-217ENST00000636964 PTMAP06454 111 aaKnown RBP13.71□□□□□ -0.21
CLN6-217ENST00000636964 ZKSCAN1P17029 563 aaPredicted RBP13.71□□□□□ -0.21
CLN6-217ENST00000636964 MCMDC2Q4G0Z9 681 aa13.71□□□□□ -0.21
CLN6-217ENST00000636964 IL17RAQ96F46 866 aa13.71□□□□□ -0.21
CLN6-217ENST00000636964 TCEANC2Q96MN5 208 aa13.71□□□□□ -0.21
CLN6-217ENST00000636964 ZNF652Q9Y2D9 606 aa13.71□□□□□ -0.21
CLN6-217ENST00000636964 UQCRHLA0A096LP55 91 aa13.7□□□□□ -0.22
CLN6-217ENST00000636964 UQCRHP07919 91 aa13.7□□□□□ -0.22
CLN6-217ENST00000636964 ZAP70P43403 619 aa13.7□□□□□ -0.22
CLN6-217ENST00000636964 MCM2P49736 904 aa13.7□□□□□ -0.22
CLN6-217ENST00000636964 ERFEQ4G0M1 354 aa13.7□□□□□ -0.22
CLN6-217ENST00000636964 PDE8BO95263 885 aa13.7□□□□□ -0.22
CLN6-217ENST00000636964 TBC1D9BQ66K14 1250 aa13.7□□□□□ -0.22
CLN6-217ENST00000636964 ANP32BQ92688 251 aaKnown RBP13.7□□□□□ -0.22
CLN6-217ENST00000636964 MPHOSPH8Q99549 860 aa13.7□□□□□ -0.22
CLN6-217ENST00000636964 TRPC5Q9UL62 973 aaPredicted RBP13.7□□□□□ -0.22
CLN6-217ENST00000636964 PHF14O94880 888 aa13.7□□□□□ -0.22
CLN6-217ENST00000636964 VGLL2Q8N8G2 317 aa13.7□□□□□ -0.22
CLN6-217ENST00000636964 TTC14Q96N46 770 aa13.7□□□□□ -0.22
CLN6-217ENST00000636964 MYH3P11055 1940 aa13.7□□□□□ -0.22
CLN6-217ENST00000636964 VPS53Q5VIR6 699 aa13.69□□□□□ -0.22
CLN6-217ENST00000636964 C3orf67Q6ZVT6 689 aa13.69□□□□□ -0.22
CLN6-217ENST00000636964 SMAP1Q8IYB5 467 aaPredicted RBP13.69□□□□□ -0.22
CLN6-217ENST00000636964 ZNF500O60304 480 aaPredicted RBP13.69□□□□□ -0.22
CLN6-217ENST00000636964 RUFY3Q7L099 469 aa13.69□□□□□ -0.22
CLN6-217ENST00000636964 BCL2L12Q9HB09 334 aa13.69□□□□□ -0.22
CLN6-217ENST00000636964 CCDC152Q4G0S7 254 aa13.69□□□□□ -0.22
CLN6-217ENST00000636964 PDRG1Q9NUG6 133 aa13.69□□□□□ -0.22
CLN6-217ENST00000636964 CLGNO14967 610 aa13.68□□□□□ -0.22
CLN6-217ENST00000636964 MSNP26038 577 aaKnown RBP13.68□□□□□ -0.22
CLN6-217ENST00000636964 MCAMP43121 646 aa13.68□□□□□ -0.22
CLN6-217ENST00000636964 SKOR2Q2VWA4 1001 aaPredicted RBP13.68□□□□□ -0.22
CLN6-217ENST00000636964 GBP4Q96PP9 640 aa13.68□□□□□ -0.22
CLN6-217ENST00000636964 NOL7Q9UMY1 257 aaKnown RBP13.68□□□□□ -0.22
CLN6-217ENST00000636964 CYP46A1Q9Y6A2 500 aa13.68□□□□□ -0.22
CLN6-217ENST00000636964 BTAF1O14981 1849 aa13.68□□□□□ -0.22
CLN6-217ENST00000636964 CNTNAP4Q9C0A0 1308 aa13.68□□□□□ -0.22
CLN6-217ENST00000636964 COL5A3P25940 1745 aaPredicted RBP13.68□□□□□ -0.22
CLN6-217ENST00000636964 RPS6KA4O75676 772 aa13.68□□□□□ -0.22
CLN6-217ENST00000636964 PHKA1P46020 1223 aa13.68□□□□□ -0.22
CLN6-217ENST00000636964 CLEC4GQ6UXB4 293 aa13.68□□□□□ -0.22
CLN6-217ENST00000636964 CHAMP1Q96JM3 812 aa13.68□□□□□ -0.22
CLN6-217ENST00000636964 PDLIM2Q96JY6 352 aa13.68□□□□□ -0.22
CLN6-217ENST00000636964 PLCD4Q9BRC7 762 aa13.68□□□□□ -0.22
CLN6-217ENST00000636964 RBSNQ9H1K0 784 aa13.68□□□□□ -0.22
CLN6-217ENST00000636964 CWC22Q9HCG8 908 aaKnown RBP13.68□□□□□ -0.22
CLN6-217ENST00000636964 RNF113AO15541 343 aaKnown RBP13.67□□□□□ -0.22
CLN6-217ENST00000636964 LARGE1O95461 756 aa13.67□□□□□ -0.22
CLN6-217ENST00000636964 WASHC4Q2M389 1173 aa13.67□□□□□ -0.22
CLN6-217ENST00000636964 KCNB2Q92953 911 aa13.67□□□□□ -0.22
CLN6-217ENST00000636964 ZSWIM6Q9HCJ5 1215 aa13.67□□□□□ -0.22
CLN6-217ENST00000636964 THSD7AQ9UPZ6 1657 aa13.67□□□□□ -0.22
CLN6-217ENST00000636964 ZPR1O75312 459 aa13.67□□□□□ -0.22
CLN6-217ENST00000636964 CUL4AQ13619 759 aa13.67□□□□□ -0.22
CLN6-217ENST00000636964 RNF20Q5VTR2 975 aa13.67□□□□□ -0.22
CLN6-217ENST00000636964 AK7Q96M32 723 aa13.67□□□□□ -0.22
CLN6-217ENST00000636964 RTCBQ9Y3I0 505 aaKnown RBP13.67□□□□□ -0.22
CLN6-217ENST00000636964 ZMYM1Q5SVZ6 1142 aa13.67□□□□□ -0.22
CLN6-217ENST00000636964 ARHGEF1Q92888 912 aaKnown RBP13.67□□□□□ -0.22
CLN6-217ENST00000636964 OSBP2Q969R2 916 aa13.67□□□□□ -0.22
CLN6-217ENST00000636964 RREB1Q92766 1687 aa13.67□□□□□ -0.22
CLN6-217ENST00000636964 A0A0G2JLW4 131 aa13.66□□□□□ -0.22
CLN6-217ENST00000636964 M0R2C6 588 aa13.66□□□□□ -0.22
CLN6-217ENST00000636964 IGHMBP2P38935 993 aaKnown RBP13.66□□□□□ -0.22
CLN6-217ENST00000636964 CCDC102BQ68D86 513 aa13.66□□□□□ -0.22
CLN6-217ENST00000636964 LIMCH1Q9UPQ0 1083 aa13.66□□□□□ -0.22
CLN6-217ENST00000636964 ZDHHC9Q9Y397 364 aa13.66□□□□□ -0.22
CLN6-217ENST00000636964 WTIPA6NIX2 430 aaPredicted RBP13.66□□□□□ -0.22
CLN6-217ENST00000636964 ONECUT3O60422 494 aaPredicted RBP13.66□□□□□ -0.22
CLN6-217ENST00000636964 MYCNP04198 464 aaPredicted RBP13.66□□□□□ -0.22
CLN6-217ENST00000636964 NUCB2P80303 420 aa13.66□□□□□ -0.22
CLN6-217ENST00000636964 KLHL40Q2TBA0 621 aa13.66□□□□□ -0.22
CLN6-217ENST00000636964 NARFQ9UHQ1 456 aa13.66□□□□□ -0.22
CLN6-217ENST00000636964 MAST3O60307 1309 aa13.66□□□□□ -0.22
CLN6-217ENST00000636964 PUM3Q15397 648 aaKnown RBP13.66□□□□□ -0.22
CLN6-217ENST00000636964 RC3H1Q5TC82 1133 aaKnown RBP13.66□□□□□ -0.22
CLN6-217ENST00000636964 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.66□□□□□ -0.22
CLN6-217ENST00000636964 MAP7D2Q96T17 732 aa13.66□□□□□ -0.22
CLN6-217ENST00000636964 SETDB2Q96T68 719 aa13.66□□□□□ -0.22
CLN6-217ENST00000636964 HELLSQ9NRZ9 838 aa13.66□□□□□ -0.22
CLN6-217ENST00000636964 LRRC4BQ9NT99 713 aa13.66□□□□□ -0.22
CLN6-217ENST00000636964 MROH5Q6ZUA9 1318 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms