RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 WASHC4Q2M389 1173 aa18.64■□□□□ 0.57
CLN3-251ENST00000636853 STOX1Q6ZVD7 989 aa18.64■□□□□ 0.57
CLN3-251ENST00000636853 DDX60Q8IY21 1712 aaKnown RBP18.64■□□□□ 0.57
CLN3-251ENST00000636853 ALDH8A1Q9H2A2 487 aaPredicted RBP18.63■□□□□ 0.57
CLN3-251ENST00000636853 AKAP11Q9UKA4 1901 aa18.63■□□□□ 0.57
CLN3-251ENST00000636853 STX6O43752 255 aa18.63■□□□□ 0.57
CLN3-251ENST00000636853 ABCC12Q96J65 1359 aa18.63■□□□□ 0.57
CLN3-251ENST00000636853 SNAP23O00161 211 aa18.62■□□□□ 0.57
CLN3-251ENST00000636853 PHKA1P46020 1223 aa18.62■□□□□ 0.57
CLN3-251ENST00000636853 GPT2Q8TD30 523 aa18.62■□□□□ 0.57
CLN3-251ENST00000636853 MPHOSPH8Q99549 860 aa18.62■□□□□ 0.57
CLN3-251ENST00000636853 ZNF652Q9Y2D9 606 aa18.62■□□□□ 0.57
CLN3-251ENST00000636853 LRP5O75197 1615 aa18.62■□□□□ 0.57
CLN3-251ENST00000636853 ZSCAN22P10073 491 aaPredicted RBP18.62■□□□□ 0.57
CLN3-251ENST00000636853 XRCC6P12956 609 aaKnown RBP eCLIP18.62■□□□□ 0.57
CLN3-251ENST00000636853 STK3Q13188 491 aa18.62■□□□□ 0.57
CLN3-251ENST00000636853 PUM3Q15397 648 aaKnown RBP18.62■□□□□ 0.57
CLN3-251ENST00000636853 LRRFIP1Q32MZ4 808 aaKnown RBP18.62■□□□□ 0.57
CLN3-251ENST00000636853 CAVIN1Q6NZI2 390 aaKnown RBP18.62■□□□□ 0.57
CLN3-251ENST00000636853 GAS2L3Q86XJ1 694 aa18.62■□□□□ 0.57
CLN3-251ENST00000636853 MROH5Q6ZUA9 1318 aa18.62■□□□□ 0.57
CLN3-251ENST00000636853 CCDC152Q4G0S7 254 aa18.61■□□□□ 0.57
CLN3-251ENST00000636853 CCDC102BQ68D86 513 aa18.61■□□□□ 0.57
CLN3-251ENST00000636853 LRRC2Q9BYS8 371 aa18.61■□□□□ 0.57
CLN3-251ENST00000636853 LAMA4Q16363 1823 aa18.61■□□□□ 0.57
CLN3-251ENST00000636853 TCHHQ07283 1943 aa18.61■□□□□ 0.57
CLN3-251ENST00000636853 ZFYP08048 801 aaPredicted RBP18.61■□□□□ 0.57
CLN3-251ENST00000636853 TTLL5Q6EMB2 1281 aa18.61■□□□□ 0.57
CLN3-251ENST00000636853 Q6ZUG5 572 aa18.61■□□□□ 0.57
CLN3-251ENST00000636853 LPIN2Q92539 896 aa18.61■□□□□ 0.57
CLN3-251ENST00000636853 PUS7LQ9H0K6 701 aaKnown RBP18.61■□□□□ 0.57
CLN3-251ENST00000636853 GDPD2Q9HCC8 539 aa18.61■□□□□ 0.57
CLN3-251ENST00000636853 MYH7P12883 1935 aa18.6■□□□□ 0.57
CLN3-251ENST00000636853 BCORQ6W2J9 1755 aa18.6■□□□□ 0.57
CLN3-251ENST00000636853 FGFR2P21802 821 aa18.6■□□□□ 0.57
CLN3-251ENST00000636853 ZNF512BQ96KM6 892 aaPredicted RBP18.6■□□□□ 0.57
CLN3-251ENST00000636853 NSFL1CQ9UNZ2 370 aaKnown RBP18.6■□□□□ 0.57
CLN3-251ENST00000636853 APPBP2Q92624 585 aa18.6■□□□□ 0.57
CLN3-251ENST00000636853 MYO5AQ9Y4I1 1855 aaKnown RBP18.59■□□□□ 0.57
CLN3-251ENST00000636853 ZNF831Q5JPB2 1677 aa18.59■□□□□ 0.57
CLN3-251ENST00000636853 FOXP2O15409 715 aa18.59■□□□□ 0.57
CLN3-251ENST00000636853 BICDL1Q6ZP65 573 aa18.59■□□□□ 0.57
CLN3-251ENST00000636853 PIH1D3Q9NQM4 214 aaKnown RBP18.59■□□□□ 0.57
CLN3-251ENST00000636853 SPATA31A6Q5VVP1 1343 aa18.59■□□□□ 0.57
CLN3-251ENST00000636853 CLEC4GQ6UXB4 293 aa18.58■□□□□ 0.57
CLN3-251ENST00000636853 RBM27Q9P2N5 1060 aaKnown RBP18.58■□□□□ 0.57
CLN3-251ENST00000636853 BTAF1O14981 1849 aa18.58■□□□□ 0.57
CLN3-251ENST00000636853 E7EWF7 191 aa18.58■□□□□ 0.56
CLN3-251ENST00000636853 ARID4AP29374 1257 aaPredicted RBP18.58■□□□□ 0.56
CLN3-251ENST00000636853 ERFEQ4G0M1 354 aa18.58■□□□□ 0.56
CLN3-251ENST00000636853 GRPEL1Q9HAV7 217 aa18.58■□□□□ 0.56
CLN3-251ENST00000636853 MTMR6Q9Y217 621 aa18.58■□□□□ 0.56
CLN3-251ENST00000636853 CNTNAP4Q9C0A0 1308 aa18.57■□□□□ 0.56
CLN3-251ENST00000636853 IDH1O75874 414 aaKnown RBP18.57■□□□□ 0.56
CLN3-251ENST00000636853 F13A1P00488 732 aa18.57■□□□□ 0.56
CLN3-251ENST00000636853 SLC5A1P13866 664 aa18.57■□□□□ 0.56
CLN3-251ENST00000636853 IGHMBP2P38935 993 aaKnown RBP18.57■□□□□ 0.56
CLN3-251ENST00000636853 PANK2Q9BZ23 570 aa18.57■□□□□ 0.56
CLN3-251ENST00000636853 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.57■□□□□ 0.562e-6■■■■■ 40.7
CLN3-251ENST00000636853 LAMB2P55268 1798 aa18.57■□□□□ 0.56
CLN3-251ENST00000636853 HSP90B1P14625 803 aaKnown RBP18.57■□□□□ 0.56
CLN3-251ENST00000636853 MRE11P49959 708 aa18.57■□□□□ 0.56
CLN3-251ENST00000636853 FGD1P98174 961 aa18.57■□□□□ 0.56
CLN3-251ENST00000636853 SLC9C2Q5TAH2 1124 aa18.57■□□□□ 0.56
CLN3-251ENST00000636853 C3orf67Q6ZVT6 689 aa18.57■□□□□ 0.56
CLN3-251ENST00000636853 DHX32Q7L7V1 743 aaKnown RBP18.57■□□□□ 0.56
CLN3-251ENST00000636853 BRF1Q92994 677 aa18.57■□□□□ 0.56
CLN3-251ENST00000636853 VPS37CA5D8V6 355 aaPredicted RBP18.56■□□□□ 0.56
CLN3-251ENST00000636853 GPAA1O43292 621 aa18.56■□□□□ 0.56
CLN3-251ENST00000636853 HMGB1P09429 215 aaKnown RBP18.56■□□□□ 0.56
CLN3-251ENST00000636853 UQCRFS1P1P0C7P4 283 aa18.56■□□□□ 0.56
CLN3-251ENST00000636853 ADD2P35612 726 aa18.56■□□□□ 0.56
CLN3-251ENST00000636853 HAND2P61296 217 aa18.56■□□□□ 0.56
CLN3-251ENST00000636853 MEX3CQ5U5Q3 659 aaKnown RBP18.56■□□□□ 0.56
CLN3-251ENST00000636853 CNPY2Q9Y2B0 182 aa18.56■□□□□ 0.56
CLN3-251ENST00000636853 COL4A1P02462 1669 aa18.56■□□□□ 0.56
CLN3-251ENST00000636853 THSD7AQ9UPZ6 1657 aa18.56■□□□□ 0.56
CLN3-251ENST00000636853 TTF1Q15361 905 aaPredicted RBP18.56■□□□□ 0.56
CLN3-251ENST00000636853 ZSCAN23Q3MJ62 389 aa18.56■□□□□ 0.56
CLN3-251ENST00000636853 LARP1BQ659C4 914 aaKnown RBP18.56■□□□□ 0.56
CLN3-251ENST00000636853 TBC1D9BQ66K14 1250 aa18.56■□□□□ 0.56
CLN3-251ENST00000636853 USP48Q86UV5 1035 aa18.56■□□□□ 0.56
CLN3-251ENST00000636853 BCL2L12Q9HB09 334 aa18.56■□□□□ 0.56
CLN3-251ENST00000636853 ARAP2Q8WZ64 1704 aa18.55■□□□□ 0.56
CLN3-251ENST00000636853 RTL9Q8NET4 1388 aa18.55■□□□□ 0.56
CLN3-251ENST00000636853 FGAP02671 866 aa18.55■□□□□ 0.56
CLN3-251ENST00000636853 CHST3Q7LGC8 479 aa18.55■□□□□ 0.56
CLN3-251ENST00000636853 SRP68Q9UHB9 627 aaKnown RBP18.55■□□□□ 0.56
CLN3-251ENST00000636853 GADD45BO75293 160 aaPredicted RBP18.54■□□□□ 0.56
CLN3-251ENST00000636853 ZSCAN25Q6NSZ9 544 aa18.54■□□□□ 0.56
CLN3-251ENST00000636853 GTF3C6Q969F1 213 aa18.54■□□□□ 0.56
CLN3-251ENST00000636853 ISY1Q9ULR0 285 aaKnown RBP18.54■□□□□ 0.56
CLN3-251ENST00000636853 GNPATO15228 680 aa18.54■□□□□ 0.56
CLN3-251ENST00000636853 EXOSC10Q01780 885 aaKnown RBP18.54■□□□□ 0.56
CLN3-251ENST00000636853 CHRNDQ07001 517 aa18.54■□□□□ 0.56
CLN3-251ENST00000636853 SPATA5Q8NB90 893 aa18.54■□□□□ 0.56
CLN3-251ENST00000636853 GJD4Q96KN9 370 aaPredicted RBP18.54■□□□□ 0.56
CLN3-251ENST00000636853 TMEM63CQ9P1W3 806 aa18.54■□□□□ 0.56
CLN3-251ENST00000636853 CTNNA3Q9UI47 895 aa18.54■□□□□ 0.56
CLN3-251ENST00000636853 CCNL1Q9UK58 526 aaPredicted RBP18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms