RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 GREM2Q9H772 168 aa22.73■■□□□ 1.23
CLN3-243ENST00000635973 KCNQ5Q9NR82 932 aa22.73■■□□□ 1.23
CLN3-243ENST00000635973 UTYO14607 1347 aa22.73■■□□□ 1.23
CLN3-243ENST00000635973 IGHMBP2P38935 993 aaKnown RBP22.72■■□□□ 1.23
CLN3-243ENST00000635973 CTCFP49711 727 aaPredicted RBP22.72■■□□□ 1.23
CLN3-243ENST00000635973 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.72■■□□□ 1.23
CLN3-243ENST00000635973 SUCLG2Q96I99 432 aa22.72■■□□□ 1.23
CLN3-243ENST00000635973 CAPNS2Q96L46 248 aa22.72■■□□□ 1.23
CLN3-243ENST00000635973 USP44Q9H0E7 712 aa22.72■■□□□ 1.23
CLN3-243ENST00000635973 TLL2Q9Y6L7 1015 aa22.72■■□□□ 1.23
CLN3-243ENST00000635973 SCN9AQ15858 1988 aa22.71■■□□□ 1.23
CLN3-243ENST00000635973 UBTFL1P0CB47 393 aaPredicted RBP22.71■■□□□ 1.23
CLN3-243ENST00000635973 MS4A1P11836 297 aa22.71■■□□□ 1.23
CLN3-243ENST00000635973 FAM161AQ3B820 660 aa22.71■■□□□ 1.23
CLN3-243ENST00000635973 TMEM57Q8N5G2 664 aa22.71■■□□□ 1.23
CLN3-243ENST00000635973 BSDC1Q9NW68 430 aaPredicted RBP22.71■■□□□ 1.23
CLN3-243ENST00000635973 RTL9Q8NET4 1388 aa22.71■■□□□ 1.23
CLN3-243ENST00000635973 POLR2AP24928 1970 aaKnown RBP22.7■■□□□ 1.23
CLN3-243ENST00000635973 VIL1P09327 827 aaKnown RBP22.7■■□□□ 1.22
CLN3-243ENST00000635973 FOXO4P98177 505 aa22.7■■□□□ 1.22
CLN3-243ENST00000635973 ITPRIPQ8IWB1 547 aa22.7■■□□□ 1.22
CLN3-243ENST00000635973 DCPSQ96C86 337 aaKnown RBP22.7■■□□□ 1.22
CLN3-243ENST00000635973 BEGAINQ9BUH8 593 aa22.7■■□□□ 1.22
CLN3-243ENST00000635973 CYP4F22Q6NT55 531 aa22.69■■□□□ 1.22
CLN3-243ENST00000635973 LMBR1LQ6UX01 489 aa22.69■■□□□ 1.22
CLN3-243ENST00000635973 USP48Q86UV5 1035 aa22.69■■□□□ 1.22
CLN3-243ENST00000635973 MPHOSPH8Q99549 860 aa22.69■■□□□ 1.22
CLN3-243ENST00000635973 BICC1Q9H694 974 aaKnown RBP22.69■■□□□ 1.22
CLN3-243ENST00000635973 PRDM10Q9NQV6 1147 aa22.69■■□□□ 1.22
CLN3-243ENST00000635973 WBP1LQ9NX94 342 aa22.69■■□□□ 1.22
CLN3-243ENST00000635973 MINPP1Q9UNW1 487 aa22.69■■□□□ 1.22
CLN3-243ENST00000635973 PSME4Q14997 1843 aa22.68■■□□□ 1.22
CLN3-243ENST00000635973 PLIN1O60240 522 aa22.68■■□□□ 1.22
CLN3-243ENST00000635973 CSF1RP07333 972 aa22.68■■□□□ 1.22
CLN3-243ENST00000635973 ITGA6P23229 1130 aa22.68■■□□□ 1.22
CLN3-243ENST00000635973 KIF4BQ2VIQ3 1234 aa22.68■■□□□ 1.22
CLN3-243ENST00000635973 EPHA10Q5JZY3 1008 aa22.68■■□□□ 1.22
CLN3-243ENST00000635973 MEIS3Q99687 375 aa22.68■■□□□ 1.22
CLN3-243ENST00000635973 HDAC5Q9UQL6 1122 aa22.68■■□□□ 1.22
CLN3-243ENST00000635973 ANKRD18BA2A2Z9 1011 aa22.67■■□□□ 1.22
CLN3-243ENST00000635973 GNAI3P08754 354 aa22.67■■□□□ 1.22
CLN3-243ENST00000635973 RLBP1P12271 317 aa22.67■■□□□ 1.22
CLN3-243ENST00000635973 IFIT5Q13325 482 aaKnown RBP22.67■■□□□ 1.22
CLN3-243ENST00000635973 TAF7LQ5H9L4 462 aa22.67■■□□□ 1.22
CLN3-243ENST00000635973 RSBN1LQ6PCB5 846 aaPredicted RBP22.67■■□□□ 1.22
CLN3-243ENST00000635973 KRT26Q7Z3Y9 468 aa22.67■■□□□ 1.22
CLN3-243ENST00000635973 PODNQ7Z5L7 613 aa22.67■■□□□ 1.22
CLN3-243ENST00000635973 AGBL3Q8NEM8 1001 aa22.67■■□□□ 1.22
CLN3-243ENST00000635973 PANK1Q8TE04 598 aa22.67■■□□□ 1.22
CLN3-243ENST00000635973 CCDC57Q2TAC2 916 aa22.66■■□□□ 1.22
CLN3-243ENST00000635973 SAPCD2Q86UD0 394 aa22.66■■□□□ 1.22
CLN3-243ENST00000635973 ANKRD2Q9GZV1 360 aa22.66■■□□□ 1.22
CLN3-243ENST00000635973 MED23Q9ULK4 1368 aa22.65■■□□□ 1.22
CLN3-243ENST00000635973 USP17L3A6NCW0 530 aa22.65■■□□□ 1.22
CLN3-243ENST00000635973 USP17L4A6NCW7 530 aa22.65■■□□□ 1.22
CLN3-243ENST00000635973 LBX1P52954 281 aa22.65■■□□□ 1.22
CLN3-243ENST00000635973 USP17L1Q7RTZ2 530 aa22.65■■□□□ 1.22
CLN3-243ENST00000635973 FBXW7Q969H0 707 aa22.65■■□□□ 1.22
CLN3-243ENST00000635973 KAZALD1Q96I82 304 aa22.65■■□□□ 1.22
CLN3-243ENST00000635973 LEMD3Q9Y2U8 911 aa22.65■■□□□ 1.22
CLN3-243ENST00000635973 EGFRP00533 1210 aa22.64■■□□□ 1.21
CLN3-243ENST00000635973 KCNJ4P48050 445 aa22.64■■□□□ 1.21
CLN3-243ENST00000635973 SULF1Q8IWU6 871 aa22.64■■□□□ 1.21
CLN3-243ENST00000635973 HHIPL1Q96JK4 782 aa22.64■■□□□ 1.21
CLN3-243ENST00000635973 LRRFIP2Q9Y608 721 aaKnown RBP22.64■■□□□ 1.21
CLN3-243ENST00000635973 USP17L8P0C7I0 530 aa22.63■■□□□ 1.21
CLN3-243ENST00000635973 MAP2K2P36507 400 aa22.63■■□□□ 1.21
CLN3-243ENST00000635973 RABL6Q3YEC7 729 aaPredicted RBP22.63■■□□□ 1.21
CLN3-243ENST00000635973 HSPA8P11142 646 aaKnown RBP22.62■■□□□ 1.21
CLN3-243ENST00000635973 ANKRD44Q8N8A2 993 aa22.62■■□□□ 1.21
CLN3-243ENST00000635973 C2orf69Q8N8R5 385 aa22.62■■□□□ 1.21
CLN3-243ENST00000635973 GGA3Q9NZ52 723 aa22.62■■□□□ 1.21
CLN3-243ENST00000635973 ZNF804BA4D1E1 1349 aa22.61■■□□□ 1.21
CLN3-243ENST00000635973 THSD7BQ9C0I4 1608 aa22.61■■□□□ 1.21
CLN3-243ENST00000635973 ADM5C9JUS6 153 aa22.61■■□□□ 1.21
CLN3-243ENST00000635973 GNAI2P04899 355 aa22.61■■□□□ 1.21
CLN3-243ENST00000635973 HUNKP57058 714 aa22.61■■□□□ 1.21
CLN3-243ENST00000635973 COA1Q9GZY4 146 aa22.61■■□□□ 1.21
CLN3-243ENST00000635973 ZNF609O15014 1411 aa22.6■■□□□ 1.21
CLN3-243ENST00000635973 WTIPA6NIX2 430 aaPredicted RBP22.6■■□□□ 1.21
CLN3-243ENST00000635973 AOC2O75106 756 aa22.6■■□□□ 1.21
CLN3-243ENST00000635973 ZNF280AP59817 542 aaPredicted RBP22.6■■□□□ 1.21
CLN3-243ENST00000635973 SCARF1Q14162 830 aa22.6■■□□□ 1.21
CLN3-243ENST00000635973 OGFOD1Q8N543 542 aa22.6■■□□□ 1.21
CLN3-243ENST00000635973 MYOZ2Q9NPC6 264 aa22.6■■□□□ 1.21
CLN3-243ENST00000635973 RRP1P56182 461 aaKnown RBP22.59■■□□□ 1.21
CLN3-243ENST00000635973 PDE3AQ14432 1141 aa22.59■■□□□ 1.21
CLN3-243ENST00000635973 MVPQ14764 893 aaKnown RBP22.59■■□□□ 1.21
CLN3-243ENST00000635973 DLK2Q6UY11 383 aa22.59■■□□□ 1.21
CLN3-243ENST00000635973 ZNF594Q96JF6 807 aaPredicted RBP22.59■■□□□ 1.21
CLN3-243ENST00000635973 GBA2Q9HCG7 927 aaPredicted RBP22.59■■□□□ 1.21
CLN3-243ENST00000635973 COG6Q9Y2V7 657 aa22.59■■□□□ 1.21
CLN3-243ENST00000635973 MYO3BQ8WXR4 1341 aa22.58■■□□□ 1.21
CLN3-243ENST00000635973 CHRNDQ07001 517 aa22.58■■□□□ 1.21
CLN3-243ENST00000635973 ANGEL2Q5VTE6 544 aaKnown RBP22.58■■□□□ 1.21
CLN3-243ENST00000635973 CNNM1Q9NRU3 951 aa22.58■■□□□ 1.21
CLN3-243ENST00000635973 STRIP1Q5VSL9 837 aa22.57■■□□□ 1.2
CLN3-243ENST00000635973 LDHAL6AQ6ZMR3 332 aa22.57■■□□□ 1.2
CLN3-243ENST00000635973 GMLQ99445 158 aa22.57■■□□□ 1.2
CLN3-243ENST00000635973 DDX19BQ9UMR2 479 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms