RNA–Protein interactions for RNA: ENST00000631420.1

LIMS3-206, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 1,580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-206ENST00000631420 BCAMP50895 628 aa18.1■□□□□ 0.49
LIMS3-206ENST00000631420 DPP8Q6V1X1 898 aaPredicted RBP18.1■□□□□ 0.49
LIMS3-206ENST00000631420 OSBPL3Q9H4L5 887 aa18.1■□□□□ 0.49
LIMS3-206ENST00000631420 ECHDC1Q9NTX5 307 aa18.1■□□□□ 0.49
LIMS3-206ENST00000631420 BCS1LQ9Y276 419 aa18.1■□□□□ 0.49
LIMS3-206ENST00000631420 IRS2Q9Y4H2 1338 aa18.1■□□□□ 0.49
LIMS3-206ENST00000631420 GYG1P46976 350 aa18.09■□□□□ 0.49
LIMS3-206ENST00000631420 GORABQ5T7V8 394 aa18.09■□□□□ 0.49
LIMS3-206ENST00000631420 PI4K2BQ8TCG2 481 aa18.09■□□□□ 0.49
LIMS3-206ENST00000631420 FAM84BQ96KN1 310 aaPredicted RBP18.09■□□□□ 0.49
LIMS3-206ENST00000631420 PHKA1P46020 1223 aa18.08■□□□□ 0.49
LIMS3-206ENST00000631420 CCDC102BQ68D86 513 aa18.08■□□□□ 0.49
LIMS3-206ENST00000631420 CC2D2BQ6DHV5 1058 aa18.08■□□□□ 0.49
LIMS3-206ENST00000631420 DLEC1Q9Y238 1755 aa18.08■□□□□ 0.49
LIMS3-206ENST00000631420 TTC41PQ6P2S7 1318 aa18.08■□□□□ 0.48
LIMS3-206ENST00000631420 CCDC158Q5M9N0 1113 aa18.08■□□□□ 0.48
LIMS3-206ENST00000631420 BOLA2Q9H3K6 86 aa18.08■□□□□ 0.48
LIMS3-206ENST00000631420 GOLGB1Q14789 3259 aaKnown RBP18.07■□□□□ 0.48
LIMS3-206ENST00000631420 RIMBP2O15034 1052 aa18.07■□□□□ 0.48
LIMS3-206ENST00000631420 GSPT1P15170 499 aaKnown RBP18.07■□□□□ 0.48
LIMS3-206ENST00000631420 ATP5JP18859 108 aa18.07■□□□□ 0.48
LIMS3-206ENST00000631420 CCDC93Q567U6 631 aa18.07■□□□□ 0.48
LIMS3-206ENST00000631420 TTC39AQ5SRH9 613 aa18.07■□□□□ 0.48
LIMS3-206ENST00000631420 FBXO33Q7Z6M2 555 aa18.07■□□□□ 0.48
LIMS3-206ENST00000631420 GPATCH3Q96I76 525 aa18.07■□□□□ 0.48
LIMS3-206ENST00000631420 CACNA1SQ13698 1873 aa18.07■□□□□ 0.48
LIMS3-206ENST00000631420 SNED1Q8TER0 1413 aa18.06■□□□□ 0.48
LIMS3-206ENST00000631420 LRRC37AA6NMS7 1700 aa18.06■□□□□ 0.48
LIMS3-206ENST00000631420 MAP4K4O95819 1239 aaPredicted RBP18.06■□□□□ 0.48
LIMS3-206ENST00000631420 SCARF1Q14162 830 aa18.06■□□□□ 0.48
LIMS3-206ENST00000631420 TTC22Q5TAA0 569 aa18.06■□□□□ 0.48
LIMS3-206ENST00000631420 NDUFB9Q9Y6M9 179 aa18.06■□□□□ 0.48
LIMS3-206ENST00000631420 A0A1B0GUL6 1792 aa18.06■□□□□ 0.48
LIMS3-206ENST00000631420 HIBADHP31937 336 aaKnown RBP18.05■□□□□ 0.48
LIMS3-206ENST00000631420 CAVIN4Q5BKX8 364 aa18.05■□□□□ 0.48
LIMS3-206ENST00000631420 C15orf52Q6ZUT6 534 aaKnown RBP18.05■□□□□ 0.48
LIMS3-206ENST00000631420 RTKN2Q8IZC4 609 aa18.05■□□□□ 0.48
LIMS3-206ENST00000631420 RTFDC1Q9BY42 306 aaPredicted RBP18.05■□□□□ 0.48
LIMS3-206ENST00000631420 IQSEC3Q9UPP2 1182 aaPredicted RBP18.05■□□□□ 0.48
LIMS3-206ENST00000631420 AOX1Q06278 1338 aa18.05■□□□□ 0.48
LIMS3-206ENST00000631420 ERC2O15083 957 aa18.04■□□□□ 0.48
LIMS3-206ENST00000631420 GLRX3O76003 335 aaKnown RBP18.04■□□□□ 0.48
LIMS3-206ENST00000631420 SNRKQ9NRH2 765 aa18.04■□□□□ 0.48
LIMS3-206ENST00000631420 DUOX1Q9NRD9 1551 aa18.04■□□□□ 0.48
LIMS3-206ENST00000631420 WASHC4Q2M389 1173 aa18.04■□□□□ 0.48
LIMS3-206ENST00000631420 PI16Q6UXB8 463 aa18.04■□□□□ 0.48
LIMS3-206ENST00000631420 VPS37DQ86XT2 251 aa18.04■□□□□ 0.48
LIMS3-206ENST00000631420 EDC3Q96F86 508 aaKnown RBP18.04■□□□□ 0.48
LIMS3-206ENST00000631420 ZC3H12CQ9C0D7 883 aaKnown RBP18.04■□□□□ 0.48
LIMS3-206ENST00000631420 ARID4AP29374 1257 aaPredicted RBP18.03■□□□□ 0.48
LIMS3-206ENST00000631420 MCAMP43121 646 aa18.03■□□□□ 0.48
LIMS3-206ENST00000631420 LTBP1Q14766 1721 aa18.03■□□□□ 0.48
LIMS3-206ENST00000631420 SOGA3Q5TF21 947 aa18.03■□□□□ 0.48
LIMS3-206ENST00000631420 ZNF512BQ96KM6 892 aaPredicted RBP18.03■□□□□ 0.48
LIMS3-206ENST00000631420 MED23Q9ULK4 1368 aa18.02■□□□□ 0.48
LIMS3-206ENST00000631420 UQCRFS1P1P0C7P4 283 aa18.02■□□□□ 0.48
LIMS3-206ENST00000631420 DOK7Q18PE1 504 aa18.02■□□□□ 0.48
LIMS3-206ENST00000631420 GRIPAP1Q4V328 841 aa18.02■□□□□ 0.48
LIMS3-206ENST00000631420 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.02■□□□□ 0.48
LIMS3-206ENST00000631420 EYA3Q99504 573 aa18.02■□□□□ 0.48
LIMS3-206ENST00000631420 DNAJC2Q99543 621 aaKnown RBP18.02■□□□□ 0.48
LIMS3-206ENST00000631420 HAUS7Q99871 368 aa18.02■□□□□ 0.48
LIMS3-206ENST00000631420 HMG20BQ9P0W2 317 aa18.02■□□□□ 0.48
LIMS3-206ENST00000631420 BRCA1P38398 1863 aaKnown RBP18.02■□□□□ 0.47
LIMS3-206ENST00000631420 SDSP20132 328 aa18.01■□□□□ 0.47
LIMS3-206ENST00000631420 ZAP70P43403 619 aa18.01■□□□□ 0.47
LIMS3-206ENST00000631420 FKBP4Q02790 459 aaKnown RBP eCLIP18.01■□□□□ 0.47
LIMS3-206ENST00000631420 RASGRF1Q13972 1273 aa18.01■□□□□ 0.47
LIMS3-206ENST00000631420 BMP2KLQ5H9B9 411 aa18.01■□□□□ 0.47
LIMS3-206ENST00000631420 PSMD1Q99460 953 aa18.01■□□□□ 0.47
LIMS3-206ENST00000631420 CD209Q9NNX6 404 aa18.01■□□□□ 0.47
LIMS3-206ENST00000631420 ZNF277Q9NRM2 450 aaPredicted RBP18.01■□□□□ 0.47
LIMS3-206ENST00000631420 TRIM6-TRIM34B2RNG4 842 aa18■□□□□ 0.47
LIMS3-206ENST00000631420 NFKBIEO00221 500 aa18■□□□□ 0.47
LIMS3-206ENST00000631420 AOC3Q16853 763 aa18■□□□□ 0.47
LIMS3-206ENST00000631420 ZNF804AQ7Z570 1209 aa18■□□□□ 0.47
LIMS3-206ENST00000631420 SUPT20HQ8NEM7 779 aa18■□□□□ 0.47
LIMS3-206ENST00000631420 RILPL2Q969X0 211 aa18■□□□□ 0.47
LIMS3-206ENST00000631420 ANTXR1Q9H6X2 564 aa18■□□□□ 0.47
LIMS3-206ENST00000631420 GNL3LQ9NVN8 582 aaKnown RBP18■□□□□ 0.47
LIMS3-206ENST00000631420 PELP1Q8IZL8 1130 aaKnown RBP18■□□□□ 0.47
LIMS3-206ENST00000631420 SPATA5Q8NB90 893 aa18■□□□□ 0.47
LIMS3-206ENST00000631420 TDRD7Q8NHU6 1098 aaKnown RBP18■□□□□ 0.47
LIMS3-206ENST00000631420 GOLIM4O00461 696 aa17.99■□□□□ 0.47
LIMS3-206ENST00000631420 FRAT2O75474 233 aaPredicted RBP17.99■□□□□ 0.47
LIMS3-206ENST00000631420 YBX3P16989 372 aaKnown RBP eCLIP17.99■□□□□ 0.47
LIMS3-206ENST00000631420 KIAA2012Q0VF49 1180 aa17.99■□□□□ 0.47
LIMS3-206ENST00000631420 DBNDD1Q9H9R9 158 aa17.99■□□□□ 0.47
LIMS3-206ENST00000631420 JAG2Q9Y219 1238 aa17.99■□□□□ 0.47
LIMS3-206ENST00000631420 ARAP2Q8WZ64 1704 aa17.99■□□□□ 0.47
LIMS3-206ENST00000631420 PPIP5K2O43314 1243 aa17.98■□□□□ 0.47
LIMS3-206ENST00000631420 CYP2E1P05181 493 aaPredicted RBP17.98■□□□□ 0.47
LIMS3-206ENST00000631420 IL1R1P14778 569 aa17.98■□□□□ 0.47
LIMS3-206ENST00000631420 RASSF7Q02833 373 aa17.98■□□□□ 0.47
LIMS3-206ENST00000631420 TBC1D9Q6ZT07 1266 aa17.98■□□□□ 0.47
LIMS3-206ENST00000631420 COA1Q9GZY4 146 aa17.98■□□□□ 0.47
LIMS3-206ENST00000631420 TAOK3Q9H2K8 898 aa17.98■□□□□ 0.47
LIMS3-206ENST00000631420 PAG1Q9NWQ8 432 aa17.98■□□□□ 0.47
LIMS3-206ENST00000631420 PRELPP51888 382 aa17.97■□□□□ 0.47
LIMS3-206ENST00000631420 CHAF1AQ13111 956 aaPredicted RBP17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms