RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 GPRC5DQ9NZD1 345 aa22.53■■□□□ 1.2
CLN3-239ENST00000628023 ABT1Q9ULW3 272 aaKnown RBP22.53■■□□□ 1.2
CLN3-239ENST00000628023 DUOX1Q9NRD9 1551 aa22.52■■□□□ 1.2
CLN3-239ENST00000628023 CIAPIN1Q6FI81 312 aa22.52■■□□□ 1.2
CLN3-239ENST00000628023 KLHDC4Q8TBB5 520 aa22.52■■□□□ 1.2
CLN3-239ENST00000628023 TBC1D16Q8TBP0 767 aa22.52■■□□□ 1.2
CLN3-239ENST00000628023 AIDAQ96BJ3 306 aa22.52■■□□□ 1.2
CLN3-239ENST00000628023 POLLQ9UGP5 575 aa22.52■■□□□ 1.2
CLN3-239ENST00000628023 VEGFBP49765 207 aa22.51■■□□□ 1.19
CLN3-239ENST00000628023 WASHC4Q2M389 1173 aa22.51■■□□□ 1.19
CLN3-239ENST00000628023 LTBP1Q14766 1721 aa22.51■■□□□ 1.19
CLN3-239ENST00000628023 RIMBP2O15034 1052 aa22.5■■□□□ 1.19
CLN3-239ENST00000628023 GPR101Q96P66 508 aaPredicted RBP22.5■■□□□ 1.19
CLN3-239ENST00000628023 PUS3Q9BZE2 481 aaKnown RBP22.5■■□□□ 1.19
CLN3-239ENST00000628023 RASSF10A6NK89 507 aa22.49■■□□□ 1.19
CLN3-239ENST00000628023 RAD17O75943 681 aa22.49■■□□□ 1.19
CLN3-239ENST00000628023 RFX5P48382 616 aaPredicted RBP22.49■■□□□ 1.19
CLN3-239ENST00000628023 MTX1Q13505 466 aa22.49■■□□□ 1.19
CLN3-239ENST00000628023 METTL24Q5JXM2 366 aa22.49■■□□□ 1.19
CLN3-239ENST00000628023 HELBQ8NG08 1087 aaPredicted RBP22.49■■□□□ 1.19
CLN3-239ENST00000628023 SIL1Q9H173 461 aa22.49■■□□□ 1.19
CLN3-239ENST00000628023 LEMD3Q9Y2U8 911 aa22.49■■□□□ 1.19
CLN3-239ENST00000628023 MROH5Q6ZUA9 1318 aa22.49■■□□□ 1.19
CLN3-239ENST00000628023 G3V3G9 751 aa22.48■■□□□ 1.19
CLN3-239ENST00000628023 TAF5LO75529 589 aa22.48■■□□□ 1.19
CLN3-239ENST00000628023 GMPSP49915 693 aaPredicted RBP22.48■■□□□ 1.19
CLN3-239ENST00000628023 PTPN12Q05209 780 aaKnown RBP22.48■■□□□ 1.19
CLN3-239ENST00000628023 LRRC24Q50LG9 513 aa22.48■■□□□ 1.19
CLN3-239ENST00000628023 DCAF8Q5TAQ9 597 aa22.48■■□□□ 1.19
CLN3-239ENST00000628023 ZC3H12CQ9C0D7 883 aaKnown RBP22.48■■□□□ 1.19
CLN3-239ENST00000628023 EYA2O00167 538 aa22.47■■□□□ 1.19
CLN3-239ENST00000628023 PA2G4Q9UQ80 394 aaKnown RBP22.47■■□□□ 1.19
CLN3-239ENST00000628023 ZNF804BA4D1E1 1349 aa22.47■■□□□ 1.19
CLN3-239ENST00000628023 ZBTB40Q9NUA8 1239 aa22.46■■□□□ 1.19
CLN3-239ENST00000628023 RIPOR2Q9Y4F9 1068 aa22.46■■□□□ 1.19
CLN3-239ENST00000628023 PNMA6EA0A0J9YXQ4 647 aa22.45■■□□□ 1.18
CLN3-239ENST00000628023 H7C1D1 291 aa22.45■■□□□ 1.18
CLN3-239ENST00000628023 CTCFP49711 727 aaPredicted RBP22.45■■□□□ 1.18
CLN3-239ENST00000628023 COPRSQ9NQ92 184 aa22.45■■□□□ 1.18
CLN3-239ENST00000628023 FBXO3Q9UK99 471 aa22.45■■□□□ 1.18
CLN3-239ENST00000628023 SUPT16HQ9Y5B9 1047 aaKnown RBP22.45■■□□□ 1.18
CLN3-239ENST00000628023 MED23Q9ULK4 1368 aa22.45■■□□□ 1.18
CLN3-239ENST00000628023 A0A1B0GUL6 1792 aa22.44■■□□□ 1.18
CLN3-239ENST00000628023 FOXN1O15353 648 aa22.44■■□□□ 1.18
CLN3-239ENST00000628023 CIAO1O76071 339 aa22.44■■□□□ 1.18
CLN3-239ENST00000628023 ECE1P42892 770 aa22.44■■□□□ 1.18
CLN3-239ENST00000628023 ATP8B2P98198 1209 aa22.44■■□□□ 1.18
CLN3-239ENST00000628023 MAP2K1Q02750 393 aaPredicted RBP22.44■■□□□ 1.18
CLN3-239ENST00000628023 DOK7Q18PE1 504 aa22.44■■□□□ 1.18
CLN3-239ENST00000628023 CEP85Q6P2H3 762 aa22.44■■□□□ 1.18
CLN3-239ENST00000628023 PAXIP1Q6ZW49 1069 aaPredicted RBP22.44■■□□□ 1.18
CLN3-239ENST00000628023 ZC3H15Q8WU90 426 aaKnown RBP22.44■■□□□ 1.18
CLN3-239ENST00000628023 WDR33Q9C0J8 1336 aaKnown RBP22.44■■□□□ 1.18
CLN3-239ENST00000628023 DBNDD1Q9H9R9 158 aa22.44■■□□□ 1.18
CLN3-239ENST00000628023 CNOT7Q9UIV1 285 aaKnown RBP22.44■■□□□ 1.18
CLN3-239ENST00000628023 WTIPA6NIX2 430 aaPredicted RBP22.43■■□□□ 1.18
CLN3-239ENST00000628023 CAPN15O75808 1086 aa22.43■■□□□ 1.18
CLN3-239ENST00000628023 PRDM10Q9NQV6 1147 aa22.43■■□□□ 1.18
CLN3-239ENST00000628023 WBP1LQ9NX94 342 aa22.43■■□□□ 1.18
CLN3-239ENST00000628023 SNAP23O00161 211 aa22.42■■□□□ 1.18
CLN3-239ENST00000628023 TRAF5O00463 557 aa22.42■■□□□ 1.18
CLN3-239ENST00000628023 IL15P40933 162 aaPredicted RBP22.42■■□□□ 1.18
CLN3-239ENST00000628023 CRBNQ96SW2 442 aa22.42■■□□□ 1.18
CLN3-239ENST00000628023 YDJCA8MPS7 323 aa22.41■■□□□ 1.18
CLN3-239ENST00000628023 ECE2O60344 883 aa22.41■■□□□ 1.18
CLN3-239ENST00000628023 OS9Q13438 667 aaPredicted RBP22.41■■□□□ 1.18
CLN3-239ENST00000628023 POLA2Q14181 598 aa22.41■■□□□ 1.18
CLN3-239ENST00000628023 ATG9AQ7Z3C6 839 aa22.41■■□□□ 1.18
CLN3-239ENST00000628023 SSH3Q8TE77 659 aa22.41■■□□□ 1.18
CLN3-239ENST00000628023 DPF2Q92785 391 aa22.41■■□□□ 1.18
CLN3-239ENST00000628023 CEP126Q9P2H0 1117 aa22.41■■□□□ 1.18
CLN3-239ENST00000628023 HMMRO75330 724 aa22.4■■□□□ 1.18
CLN3-239ENST00000628023 PDE8BO95263 885 aa22.4■■□□□ 1.18
CLN3-239ENST00000628023 KLRK1P26718 216 aa22.4■■□□□ 1.18
CLN3-239ENST00000628023 FMR1Q06787 632 aaKnown RBP eCLIP22.4■■□□□ 1.18
CLN3-239ENST00000628023 G3BP1Q13283 466 aaKnown RBP eCLIP22.4■■□□□ 1.18
CLN3-239ENST00000628023 UBE4AQ14139 1066 aa22.4■■□□□ 1.18
CLN3-239ENST00000628023 PUM3Q15397 648 aaKnown RBP22.4■■□□□ 1.18
CLN3-239ENST00000628023 CST9Q5W186 159 aa22.4■■□□□ 1.18
CLN3-239ENST00000628023 PGAP2Q9UHJ9 254 aa22.4■■□□□ 1.18
CLN3-239ENST00000628023 TRPM7Q96QT4 1865 aa22.4■■□□□ 1.18
CLN3-239ENST00000628023 CDC37L1Q7L3B6 337 aa22.39■■□□□ 1.17
CLN3-239ENST00000628023 RPAP2Q8IXW5 612 aaPredicted RBP22.39■■□□□ 1.17
CLN3-239ENST00000628023 MICALL2Q8IY33 904 aa22.39■■□□□ 1.17
CLN3-239ENST00000628023 CAPNS2Q96L46 248 aa22.39■■□□□ 1.17
CLN3-239ENST00000628023 BEGAINQ9BUH8 593 aa22.39■■□□□ 1.17
CLN3-239ENST00000628023 TLL2Q9Y6L7 1015 aa22.39■■□□□ 1.17
CLN3-239ENST00000628023 PSMD14O00487 310 aa22.38■■□□□ 1.17
CLN3-239ENST00000628023 SURF6O75683 361 aaKnown RBP22.38■■□□□ 1.17
CLN3-239ENST00000628023 CELF2O95319 508 aaKnown RBP22.38■■□□□ 1.17
CLN3-239ENST00000628023 RPS12P25398 132 aaKnown RBP22.38■■□□□ 1.17
CLN3-239ENST00000628023 GRM1Q13255 1194 aa22.38■■□□□ 1.17
CLN3-239ENST00000628023 ZNF804AQ7Z570 1209 aa22.38■■□□□ 1.17
CLN3-239ENST00000628023 VGLL2Q8N8G2 317 aa22.38■■□□□ 1.17
CLN3-239ENST00000628023 COA1Q9GZY4 146 aa22.38■■□□□ 1.17
CLN3-239ENST00000628023 IFIT1P09914 478 aaKnown RBP22.37■■□□□ 1.17
CLN3-239ENST00000628023 SLC5A1P13866 664 aa22.37■■□□□ 1.17
CLN3-239ENST00000628023 TXNRD3Q86VQ6 643 aa22.37■■□□□ 1.17
CLN3-239ENST00000628023 GLIS2Q9BZE0 524 aaPredicted RBP22.37■■□□□ 1.17
CLN3-239ENST00000628023 ZBTB12Q9Y330 459 aaPredicted RBP22.37■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms