RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 MED23Q9ULK4 1368 aa18.96■□□□□ 0.63
PNKP-218ENST00000625299 GPR25O00155 361 aa18.96■□□□□ 0.63
PNKP-218ENST00000625299 SASH1O94885 1247 aa18.96■□□□□ 0.63
PNKP-218ENST00000625299 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.96■□□□□ 0.63
PNKP-218ENST00000625299 WNT10BO00744 389 aa18.95■□□□□ 0.62
PNKP-218ENST00000625299 DDX58O95786 925 aaKnown RBP18.95■□□□□ 0.62
PNKP-218ENST00000625299 CTSWP56202 376 aa18.95■□□□□ 0.62
PNKP-218ENST00000625299 SREBF2Q12772 1141 aa18.95■□□□□ 0.62
PNKP-218ENST00000625299 DACT2Q5SW24 774 aa18.95■□□□□ 0.62
PNKP-218ENST00000625299 METTL22Q9BUU2 404 aaPredicted RBP18.95■□□□□ 0.62
PNKP-218ENST00000625299 MYH3P11055 1940 aa18.95■□□□□ 0.62
PNKP-218ENST00000625299 ZNF646O15015 1829 aaPredicted RBP18.95■□□□□ 0.62
PNKP-218ENST00000625299 TM4SF4P48230 202 aa18.94■□□□□ 0.62
PNKP-218ENST00000625299 FBXO46Q6PJ61 603 aaPredicted RBP18.94■□□□□ 0.62
PNKP-218ENST00000625299 MINPP1Q9UNW1 487 aa18.94■□□□□ 0.62
PNKP-218ENST00000625299 MAP3K2Q9Y2U5 619 aa18.94■□□□□ 0.62
PNKP-218ENST00000625299 CCT4P50991 539 aaKnown RBP18.93■□□□□ 0.62
PNKP-218ENST00000625299 ARMC9Q7Z3E5 817 aa18.93■□□□□ 0.62
PNKP-218ENST00000625299 GREM2Q9H772 168 aa18.93■□□□□ 0.62
PNKP-218ENST00000625299 MYO3BQ8WXR4 1341 aa18.93■□□□□ 0.62
PNKP-218ENST00000625299 FKTNO75072 461 aa18.92■□□□□ 0.62
PNKP-218ENST00000625299 ZNF853P0CG23 659 aa18.92■□□□□ 0.62
PNKP-218ENST00000625299 GNAI1P63096 354 aa18.92■□□□□ 0.62
PNKP-218ENST00000625299 PTPN12Q05209 780 aaKnown RBP18.92■□□□□ 0.62
PNKP-218ENST00000625299 STRIP1Q5VSL9 837 aa18.92■□□□□ 0.62
PNKP-218ENST00000625299 BSDC1Q9NW68 430 aaPredicted RBP18.92■□□□□ 0.62
PNKP-218ENST00000625299 IFT57Q9NWB7 429 aa18.92■□□□□ 0.62
PNKP-218ENST00000625299 KIAA0825Q8IV33 1275 aa18.91■□□□□ 0.62
PNKP-218ENST00000625299 C8orf58Q8NAV2 365 aa18.91■□□□□ 0.62
PNKP-218ENST00000625299 TTLL11Q8NHH1 800 aa18.91■□□□□ 0.62
PNKP-218ENST00000625299 COA1Q9GZY4 146 aa18.91■□□□□ 0.62
PNKP-218ENST00000625299 R3HDMLQ9H3Y0 253 aa18.91■□□□□ 0.62
PNKP-218ENST00000625299 ANGEL1Q9UNK9 670 aaKnown RBP18.91■□□□□ 0.62
PNKP-218ENST00000625299 DDX10Q13206 875 aaKnown RBP18.9■□□□□ 0.62
PNKP-218ENST00000625299 CCDC30Q5VVM6 783 aa18.9■□□□□ 0.62
PNKP-218ENST00000625299 TXNRD3Q86VQ6 643 aa18.9■□□□□ 0.62
PNKP-218ENST00000625299 APOBEC3FQ8IUX4 373 aaKnown RBP18.9■□□□□ 0.62
PNKP-218ENST00000625299 FZD1Q9UP38 647 aa18.9■□□□□ 0.62
PNKP-218ENST00000625299 APAF1O14727 1248 aa18.89■□□□□ 0.61
PNKP-218ENST00000625299 IGKV5-2P06315 115 aa18.89■□□□□ 0.61
PNKP-218ENST00000625299 KLRK1P26718 216 aa18.89■□□□□ 0.61
PNKP-218ENST00000625299 IGHMBP2P38935 993 aaKnown RBP18.89■□□□□ 0.61
PNKP-218ENST00000625299 CALD1Q05682 793 aaKnown RBP18.89■□□□□ 0.61
PNKP-218ENST00000625299 NOM1Q5C9Z4 860 aaKnown RBP18.89■□□□□ 0.61
PNKP-218ENST00000625299 TTLL5Q6EMB2 1281 aa18.89■□□□□ 0.61
PNKP-218ENST00000625299 PI4KAP2A4QPH2 592 aa18.88■□□□□ 0.61
PNKP-218ENST00000625299 NEXNQ0ZGT2 675 aa18.88■□□□□ 0.61
PNKP-218ENST00000625299 CWF19L2Q2TBE0 894 aaKnown RBP18.88■□□□□ 0.61
PNKP-218ENST00000625299 SPRYD7Q5W111 196 aa18.88■□□□□ 0.61
PNKP-218ENST00000625299 PI4KAP1Q8N8J0 262 aa18.88■□□□□ 0.61
PNKP-218ENST00000625299 ZNF804BA4D1E1 1349 aa18.87■□□□□ 0.61
PNKP-218ENST00000625299 GTF2IP78347 998 aa18.87■□□□□ 0.61
PNKP-218ENST00000625299 KSR2Q6VAB6 950 aa18.87■□□□□ 0.61
PNKP-218ENST00000625299 UBE3BQ7Z3V4 1068 aa18.87■□□□□ 0.61
PNKP-218ENST00000625299 LEMD3Q9Y2U8 911 aa18.87■□□□□ 0.61
PNKP-218ENST00000625299 TRIM17Q9Y577 477 aa18.87■□□□□ 0.61
PNKP-218ENST00000625299 ALDH1A1P00352 501 aa18.86■□□□□ 0.61
PNKP-218ENST00000625299 KCNJ4P48050 445 aa18.86■□□□□ 0.61
PNKP-218ENST00000625299 CFHR5Q9BXR6 569 aa18.86■□□□□ 0.61
PNKP-218ENST00000625299 LDLRAD1Q5T700 205 aa18.85■□□□□ 0.61
PNKP-218ENST00000625299 TSPYL6Q8N831 410 aa18.85■□□□□ 0.61
PNKP-218ENST00000625299 SLC10A4Q96EP9 437 aa18.85■□□□□ 0.61
PNKP-218ENST00000625299 MPHOSPH8Q99549 860 aa18.85■□□□□ 0.61
PNKP-218ENST00000625299 CHMP4AQ9BY43 222 aa18.85■□□□□ 0.61
PNKP-218ENST00000625299 DEFB129Q9H1M3 183 aa18.85■□□□□ 0.61
PNKP-218ENST00000625299 MANSC4A6NHS7 340 aaPredicted RBP18.84■□□□□ 0.61
PNKP-218ENST00000625299 NEURL1BA8MQ27 555 aa18.84■□□□□ 0.61
PNKP-218ENST00000625299 ITGA6P23229 1130 aa18.84■□□□□ 0.61
PNKP-218ENST00000625299 MMP14P50281 582 aa18.84■□□□□ 0.61
PNKP-218ENST00000625299 DLGAP5Q15398 846 aa18.84■□□□□ 0.61
PNKP-218ENST00000625299 IFNL1Q8IU54 200 aa18.84■□□□□ 0.61
PNKP-218ENST00000625299 GCC1Q96CN9 775 aa18.84■□□□□ 0.61
PNKP-218ENST00000625299 CLMNQ96JQ2 1002 aa18.84■□□□□ 0.61
PNKP-218ENST00000625299 STK31Q9BXU1 1019 aa18.84■□□□□ 0.61
PNKP-218ENST00000625299 ANKRD2Q9GZV1 360 aa18.84■□□□□ 0.61
PNKP-218ENST00000625299 COL1A1P02452 1464 aaPredicted RBP18.84■□□□□ 0.61
PNKP-218ENST00000625299 F8W031 263 aaPredicted RBP18.83■□□□□ 0.6
PNKP-218ENST00000625299 ZBED3Q96IU2 234 aaPredicted RBP18.83■□□□□ 0.6
PNKP-218ENST00000625299 HTTP42858 3142 aa18.83■□□□□ 0.6
PNKP-218ENST00000625299 SSC5DA1L4H1 1573 aa18.82■□□□□ 0.6
PNKP-218ENST00000625299 ECM29Q5VYK3 1845 aa18.82■□□□□ 0.6
PNKP-218ENST00000625299 POTEFA5A3E0 1075 aa18.82■□□□□ 0.6
PNKP-218ENST00000625299 OTOP1Q7RTM1 612 aa18.82■□□□□ 0.6
PNKP-218ENST00000625299 WNK4Q96J92 1243 aa18.82■□□□□ 0.6
PNKP-218ENST00000625299 PCDHAC2Q9Y5I4 1007 aa18.82■□□□□ 0.6
PNKP-218ENST00000625299 MKI67P46013 3256 aaKnown RBP18.82■□□□□ 0.6
PNKP-218ENST00000625299 CENPFP49454 3210 aa18.81■□□□□ 0.6
PNKP-218ENST00000625299 CLRN2A0PK11 232 aa18.81■□□□□ 0.6
PNKP-218ENST00000625299 H7C1W4 665 aa18.81■□□□□ 0.6
PNKP-218ENST00000625299 IGF2BP3O00425 579 aaKnown RBP eCLIP18.81■□□□□ 0.6
PNKP-218ENST00000625299 PPP1R12BO60237 982 aaPredicted RBP18.81■□□□□ 0.6
PNKP-218ENST00000625299 INHBEP58166 350 aa18.81■□□□□ 0.6
PNKP-218ENST00000625299 CHRNDQ07001 517 aa18.81■□□□□ 0.6
PNKP-218ENST00000625299 TSR2Q969E8 191 aaKnown RBP18.81■□□□□ 0.6
PNKP-218ENST00000625299 VEZTQ9HBM0 779 aa18.81■□□□□ 0.6
PNKP-218ENST00000625299 CD209Q9NNX6 404 aa18.81■□□□□ 0.6
PNKP-218ENST00000625299 SNAP23O00161 211 aa18.8■□□□□ 0.6
PNKP-218ENST00000625299 ZBTB48P10074 688 aaPredicted RBP18.8■□□□□ 0.6
PNKP-218ENST00000625299 G2E3Q7L622 706 aa18.8■□□□□ 0.6
PNKP-218ENST00000625299 CERS5Q8N5B7 392 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms