RNA–Protein interactions for RNA: ENST00000621897.1

BRCA1-229, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5

Gene BRCA1, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-229ENST00000621897 USP21Q9UK80 565 aa8.58□□□□□ -1.04
BRCA1-229ENST00000621897 EPHA1P21709 976 aa8.57□□□□□ -1.04
BRCA1-229ENST00000621897 CDC27P30260 824 aa8.57□□□□□ -1.04
BRCA1-229ENST00000621897 CDC25BP30305 580 aa8.57□□□□□ -1.04
BRCA1-229ENST00000621897 GALNT11Q8NCW6 608 aa8.57□□□□□ -1.04
BRCA1-229ENST00000621897 PMEPA1Q969W9 287 aa8.57□□□□□ -1.04
BRCA1-229ENST00000621897 LATS2Q9NRM7 1088 aa8.57□□□□□ -1.04
BRCA1-229ENST00000621897 BRPF3Q9ULD4 1205 aa8.57□□□□□ -1.04
BRCA1-229ENST00000621897 PPME1Q9Y570 386 aa8.57□□□□□ -1.04
BRCA1-229ENST00000621897 K7ELQ4 463 aaPredicted RBP8.56□□□□□ -1.04
BRCA1-229ENST00000621897 NRG1Q02297 640 aaPredicted RBP8.56□□□□□ -1.04
BRCA1-229ENST00000621897 IGF2-ASQ6U949 168 aa8.56□□□□□ -1.04
BRCA1-229ENST00000621897 TXNRD3Q86VQ6 643 aa8.56□□□□□ -1.04
BRCA1-229ENST00000621897 CACTIN-AS1Q8N1I8 211 aa8.56□□□□□ -1.04
BRCA1-229ENST00000621897 CCER1Q8TC90 406 aaPredicted RBP8.56□□□□□ -1.04
BRCA1-229ENST00000621897 ZKSCAN3Q9BRR0 538 aa8.56□□□□□ -1.04
BRCA1-229ENST00000621897 TM4SF5O14894 197 aa8.55□□□□□ -1.04
BRCA1-229ENST00000621897 POLR3DP05423 398 aaPredicted RBP8.55□□□□□ -1.04
BRCA1-229ENST00000621897 RSPO4Q2I0M5 234 aaPredicted RBP8.55□□□□□ -1.04
BRCA1-229ENST00000621897 ADAM19Q9H013 955 aa8.55□□□□□ -1.04
BRCA1-229ENST00000621897 ZFYVE28Q9HCC9 887 aa8.55□□□□□ -1.04
BRCA1-229ENST00000621897 SOWAHDA6NJG2 315 aa8.54□□□□□ -1.04
BRCA1-229ENST00000621897 PDE2AO00408 941 aaPredicted RBP8.54□□□□□ -1.04
BRCA1-229ENST00000621897 BRD1O95696 1058 aa8.54□□□□□ -1.04
BRCA1-229ENST00000621897 PTPRAP18433 802 aa8.54□□□□□ -1.04
BRCA1-229ENST00000621897 ITGB7P26010 798 aa8.54□□□□□ -1.04
BRCA1-229ENST00000621897 NOS3P29474 1203 aa8.54□□□□□ -1.04
BRCA1-229ENST00000621897 IREB2P48200 963 aaKnown RBP8.54□□□□□ -1.04
BRCA1-229ENST00000621897 PEAR1Q5VY43 1037 aaPredicted RBP8.54□□□□□ -1.04
BRCA1-229ENST00000621897 WFDC12Q8WWY7 111 aa8.54□□□□□ -1.04
BRCA1-229ENST00000621897 OSMRQ99650 979 aa8.54□□□□□ -1.04
BRCA1-229ENST00000621897 CARD10Q9BWT7 1032 aa8.54□□□□□ -1.04
BRCA1-229ENST00000621897 MUC3BQ9H195 1237 aa8.54□□□□□ -1.04
BRCA1-229ENST00000621897 SRA1Q9HD15 236 aaKnown RBP8.54□□□□□ -1.04
BRCA1-229ENST00000621897 GNEQ9Y223 722 aaKnown RBP8.54□□□□□ -1.04
BRCA1-229ENST00000621897 AMOTL2Q9Y2J4 779 aa8.54□□□□□ -1.04
BRCA1-229ENST00000621897 NDUFB5O43674 189 aa8.53□□□□□ -1.04
BRCA1-229ENST00000621897 IGHA2P01877 340 aa8.53□□□□□ -1.04
BRCA1-229ENST00000621897 FOXD4L6Q3SYB3 417 aaPredicted RBP8.53□□□□□ -1.04
BRCA1-229ENST00000621897 NKAPLQ5M9Q1 402 aa8.53□□□□□ -1.04
BRCA1-229ENST00000621897 USPL1Q5W0Q7 1092 aa8.53□□□□□ -1.04
BRCA1-229ENST00000621897 FOXD4L3Q6VB84 417 aaPredicted RBP8.53□□□□□ -1.04
BRCA1-229ENST00000621897 TMEM102Q8N9M5 508 aaPredicted RBP8.53□□□□□ -1.04
BRCA1-229ENST00000621897 FAM129BQ96TA1 746 aa8.53□□□□□ -1.04
BRCA1-229ENST00000621897 SSBP4Q9BWG4 385 aaPredicted RBP8.53□□□□□ -1.04
BRCA1-229ENST00000621897 KCNK4Q9NYG8 393 aa8.53□□□□□ -1.04
BRCA1-229ENST00000621897 FSCN2O14926 492 aa8.52□□□□□ -1.05
BRCA1-229ENST00000621897 ALX3O95076 343 aa8.52□□□□□ -1.05
BRCA1-229ENST00000621897 EDN3P14138 238 aa8.52□□□□□ -1.05
BRCA1-229ENST00000621897 ORC1Q13415 861 aa8.52□□□□□ -1.05
BRCA1-229ENST00000621897 MAP4K3Q8IVH8 894 aa8.52□□□□□ -1.05
BRCA1-229ENST00000621897 NXPE3Q969Y0 559 aa8.52□□□□□ -1.05
BRCA1-229ENST00000621897 GPR182O15218 404 aa8.51□□□□□ -1.05
BRCA1-229ENST00000621897 WISP1O95388 367 aa8.51□□□□□ -1.05
BRCA1-229ENST00000621897 MEGF10Q96KG7 1140 aa8.51□□□□□ -1.05
BRCA1-229ENST00000621897 MRPL18Q9H0U6 180 aaKnown RBP8.51□□□□□ -1.05
BRCA1-229ENST00000621897 SEMA6BQ9H3T3 888 aa8.51□□□□□ -1.05
BRCA1-229ENST00000621897 SOX13Q9UN79 622 aa8.51□□□□□ -1.05
BRCA1-229ENST00000621897 F8W735 103 aaPredicted RBP8.5□□□□□ -1.05
BRCA1-229ENST00000621897 H3BRJ5 948 aa8.5□□□□□ -1.05
BRCA1-229ENST00000621897 HGSNATQ68CP4 663 aa8.5□□□□□ -1.05
BRCA1-229ENST00000621897 AGGF1Q8N302 714 aaeCLIP8.5□□□□□ -1.05
BRCA1-229ENST00000621897 KLHDC7BQ96G42 594 aa8.5□□□□□ -1.05
BRCA1-229ENST00000621897 DDX3YO15523 660 aaKnown RBP8.49□□□□□ -1.05
BRCA1-229ENST00000621897 DYRK3O43781 588 aa8.49□□□□□ -1.05
BRCA1-229ENST00000621897 ADAM11O75078 769 aa8.49□□□□□ -1.05
BRCA1-229ENST00000621897 CD68P34810 354 aaPredicted RBP8.49□□□□□ -1.05
BRCA1-229ENST00000621897 FOXD4L4Q8WXT5 416 aaPredicted RBP8.49□□□□□ -1.05
BRCA1-229ENST00000621897 TP53INP1Q96A56 240 aa8.49□□□□□ -1.05
BRCA1-229ENST00000621897 AKTIPQ9H8T0 292 aa8.49□□□□□ -1.05
BRCA1-229ENST00000621897 METTL12A8MUP2 240 aa8.48□□□□□ -1.05
BRCA1-229ENST00000621897 PDE3BQ13370 1112 aa8.48□□□□□ -1.05
BRCA1-229ENST00000621897 FAM117BQ6P1L5 589 aa8.48□□□□□ -1.05
BRCA1-229ENST00000621897 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.48□□□□□ -1.05
BRCA1-229ENST00000621897 VN1R5Q7Z5H4 357 aa8.48□□□□□ -1.05
BRCA1-229ENST00000621897 GALNT12Q8IXK2 581 aa8.48□□□□□ -1.05
BRCA1-229ENST00000621897 TMEM130Q8N3G9 435 aa8.48□□□□□ -1.05
BRCA1-229ENST00000621897 ASAP3Q8TDY4 903 aa8.48□□□□□ -1.05
BRCA1-229ENST00000621897 CITED4Q96RK1 184 aa8.48□□□□□ -1.05
BRCA1-229ENST00000621897 BHLHE41Q9C0J9 482 aaPredicted RBP8.48□□□□□ -1.05
BRCA1-229ENST00000621897 SEC31BQ9NQW1 1179 aa8.48□□□□□ -1.05
BRCA1-229ENST00000621897 A0A1W2PP55 124 aa8.47□□□□□ -1.05
BRCA1-229ENST00000621897 FAM177BA6PVY3 158 aa8.47□□□□□ -1.05
BRCA1-229ENST00000621897 CABP4P57796 275 aa8.47□□□□□ -1.05
BRCA1-229ENST00000621897 KLHL23Q8NBE8 558 aa8.47□□□□□ -1.05
BRCA1-229ENST00000621897 SLC7A3Q8WY07 619 aa8.47□□□□□ -1.05
BRCA1-229ENST00000621897 BSNDQ8WZ55 320 aa8.47□□□□□ -1.05
BRCA1-229ENST00000621897 NIF3L1Q9GZT8 377 aa8.47□□□□□ -1.05
BRCA1-229ENST00000621897 BIN2Q9UBW5 565 aaPredicted RBP8.47□□□□□ -1.05
BRCA1-229ENST00000621897 IVNS1ABPQ9Y6Y0 642 aa8.47□□□□□ -1.05
BRCA1-229ENST00000621897 PIP4K2BP78356 416 aa8.46□□□□□ -1.06
BRCA1-229ENST00000621897 TMC1Q8TDI8 760 aa8.46□□□□□ -1.06
BRCA1-229ENST00000621897 DCAF11Q8TEB1 546 aa8.46□□□□□ -1.06
BRCA1-229ENST00000621897 UBASH3BQ8TF42 649 aa8.46□□□□□ -1.06
BRCA1-229ENST00000621897 RBCK1Q9BYM8 510 aa8.46□□□□□ -1.06
BRCA1-229ENST00000621897 SOX1O00570 391 aaPredicted RBP8.45□□□□□ -1.06
BRCA1-229ENST00000621897 CPNE3O75131 537 aaKnown RBP8.45□□□□□ -1.06
BRCA1-229ENST00000621897 Q6ZS46 218 aa8.45□□□□□ -1.06
BRCA1-229ENST00000621897 KIAA1211Q6ZU35 1233 aa8.45□□□□□ -1.06
BRCA1-229ENST00000621897 ACAD11Q709F0 780 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms