RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-226ENST00000602029 IGHMBP2P38935 993 aaKnown RBP6.66□□□□□ -1.34
VRK3-226ENST00000602029 MOB2Q70IA6 237 aa6.66□□□□□ -1.34
VRK3-226ENST00000602029 LRP10Q7Z4F1 713 aa6.66□□□□□ -1.34
VRK3-226ENST00000602029 RASAL3Q86YV0 1011 aa6.66□□□□□ -1.34
VRK3-226ENST00000602029 REM2Q8IYK8 340 aaPredicted RBP6.66□□□□□ -1.34
VRK3-226ENST00000602029 SLC17A8Q8NDX2 589 aa6.66□□□□□ -1.34
VRK3-226ENST00000602029 AGBL3Q8NEM8 1001 aa6.66□□□□□ -1.34
VRK3-226ENST00000602029 CSRNP1Q96S65 589 aa6.66□□□□□ -1.34
VRK3-226ENST00000602029 ISCA1Q9BUE6 129 aa6.66□□□□□ -1.34
VRK3-226ENST00000602029 STK31Q9BXU1 1019 aa6.66□□□□□ -1.34
VRK3-226ENST00000602029 PHAXQ9H814 394 aaKnown RBP6.66□□□□□ -1.34
VRK3-226ENST00000602029 RNF216Q9NWF9 866 aaPredicted RBP6.66□□□□□ -1.34
VRK3-226ENST00000602029 COLQQ9Y215 455 aaPredicted RBP6.66□□□□□ -1.34
VRK3-226ENST00000602029 CHMP3Q9Y3E7 222 aa6.66□□□□□ -1.34
VRK3-226ENST00000602029 GTF3C3Q9Y5Q9 886 aa6.66□□□□□ -1.34
VRK3-226ENST00000602029 MYBBP1AQ9BQG0 1328 aaKnown RBP6.66□□□□□ -1.34
VRK3-226ENST00000602029 HOXB7P09629 217 aa6.65□□□□□ -1.34
VRK3-226ENST00000602029 ATP2B4P23634 1241 aa6.65□□□□□ -1.34
VRK3-226ENST00000602029 RBM5P52756 815 aaKnown RBP eCLIP6.65□□□□□ -1.34
VRK3-226ENST00000602029 GNAI1P63096 354 aa6.65□□□□□ -1.34
VRK3-226ENST00000602029 FKBP1BP68106 108 aa6.65□□□□□ -1.34
VRK3-226ENST00000602029 SREBF2Q12772 1141 aa6.65□□□□□ -1.34
VRK3-226ENST00000602029 CCDC30Q5VVM6 783 aa6.65□□□□□ -1.34
VRK3-226ENST00000602029 ARMC9Q7Z3E5 817 aa6.65□□□□□ -1.34
VRK3-226ENST00000602029 MPHOSPH8Q99549 860 aa6.65□□□□□ -1.34
VRK3-226ENST00000602029 MXD3Q9BW11 206 aa6.65□□□□□ -1.34
VRK3-226ENST00000602029 CHMP4AQ9BY43 222 aa6.65□□□□□ -1.34
VRK3-226ENST00000602029 MBIPQ9NS73 344 aa6.65□□□□□ -1.34
VRK3-226ENST00000602029 MAP3K2Q9Y2U5 619 aa6.65□□□□□ -1.34
VRK3-226ENST00000602029 DLG5Q8TDM6 1919 aa6.65□□□□□ -1.34
VRK3-226ENST00000602029 DUOX1Q9NRD9 1551 aa6.65□□□□□ -1.35
VRK3-226ENST00000602029 LAMA3Q16787 3333 aa6.65□□□□□ -1.35
VRK3-226ENST00000602029 F8W031 263 aaPredicted RBP6.64□□□□□ -1.35
VRK3-226ENST00000602029 PCCAP05165 728 aaPredicted RBP6.64□□□□□ -1.35
VRK3-226ENST00000602029 CTSWP56202 376 aa6.64□□□□□ -1.35
VRK3-226ENST00000602029 PKN2Q16513 984 aaKnown RBP6.64□□□□□ -1.35
VRK3-226ENST00000602029 NBPF9Q3BBW0 867 aa6.64□□□□□ -1.35
VRK3-226ENST00000602029 PODNQ7Z5L7 613 aa6.64□□□□□ -1.35
VRK3-226ENST00000602029 KIAA0825Q8IV33 1275 aa6.64□□□□□ -1.35
VRK3-226ENST00000602029 CCDC191Q8NCU4 936 aa6.64□□□□□ -1.35
VRK3-226ENST00000602029 ZNF296Q8WUU4 475 aaPredicted RBP6.64□□□□□ -1.35
VRK3-226ENST00000602029 VEZTQ9HBM0 779 aa6.64□□□□□ -1.35
VRK3-226ENST00000602029 ANGEL1Q9UNK9 670 aaKnown RBP6.64□□□□□ -1.35
VRK3-226ENST00000602029 ADAMTS8Q9UP79 889 aa6.64□□□□□ -1.35
VRK3-226ENST00000602029 TRIM35Q9UPQ4 493 aa6.64□□□□□ -1.35
VRK3-226ENST00000602029 VCANP13611 3396 aa6.64□□□□□ -1.35
VRK3-226ENST00000602029 ANKRD36CQ5JPF3 1778 aa6.64□□□□□ -1.35
VRK3-226ENST00000602029 POTEFA5A3E0 1075 aa6.63□□□□□ -1.35
VRK3-226ENST00000602029 APAF1O14727 1248 aa6.63□□□□□ -1.35
VRK3-226ENST00000602029 MYO1BO43795 1136 aa6.63□□□□□ -1.35
VRK3-226ENST00000602029 PLIN1O60240 522 aa6.63□□□□□ -1.35
VRK3-226ENST00000602029 FKTNO75072 461 aa6.63□□□□□ -1.35
VRK3-226ENST00000602029 CCT4P50991 539 aaKnown RBP6.63□□□□□ -1.35
VRK3-226ENST00000602029 ZNF280AP59817 542 aaPredicted RBP6.63□□□□□ -1.35
VRK3-226ENST00000602029 DLGAP5Q15398 846 aa6.63□□□□□ -1.35
VRK3-226ENST00000602029 TAF7LQ5H9L4 462 aa6.63□□□□□ -1.35
VRK3-226ENST00000602029 TTLL5Q6EMB2 1281 aa6.63□□□□□ -1.35
VRK3-226ENST00000602029 UBE3BQ7Z3V4 1068 aa6.63□□□□□ -1.35
VRK3-226ENST00000602029 APOBEC3FQ8IUX4 373 aaKnown RBP6.63□□□□□ -1.35
VRK3-226ENST00000602029 MYO3BQ8WXR4 1341 aa6.63□□□□□ -1.35
VRK3-226ENST00000602029 SLC10A4Q96EP9 437 aa6.63□□□□□ -1.35
VRK3-226ENST00000602029 METTL22Q9BUU2 404 aaPredicted RBP6.63□□□□□ -1.35
VRK3-226ENST00000602029 IFT57Q9NWB7 429 aa6.63□□□□□ -1.35
VRK3-226ENST00000602029 PODXL2Q9NZ53 605 aa6.63□□□□□ -1.35
VRK3-226ENST00000602029 LAMB2P55268 1798 aa6.62□□□□□ -1.35
VRK3-226ENST00000602029 PITPNM2Q9BZ72 1349 aa6.62□□□□□ -1.35
VRK3-226ENST00000602029 GPR25O00155 361 aa6.62□□□□□ -1.35
VRK3-226ENST00000602029 PPP1R12BO60237 982 aaPredicted RBP6.62□□□□□ -1.35
VRK3-226ENST00000602029 MYCP01106 439 aaPredicted RBP6.62□□□□□ -1.35
VRK3-226ENST00000602029 GTF2IP78347 998 aa6.62□□□□□ -1.35
VRK3-226ENST00000602029 TRIM28Q13263 835 aaKnown RBP6.62□□□□□ -1.35
VRK3-226ENST00000602029 CWF19L2Q2TBE0 894 aaKnown RBP6.62□□□□□ -1.35
VRK3-226ENST00000602029 COA1Q9GZY4 146 aa6.62□□□□□ -1.35
VRK3-226ENST00000602029 GREM2Q9H772 168 aa6.62□□□□□ -1.35
VRK3-226ENST00000602029 JAG2Q9Y219 1238 aa6.62□□□□□ -1.35
VRK3-226ENST00000602029 TRIM17Q9Y577 477 aa6.62□□□□□ -1.35
VRK3-226ENST00000602029 SPTBN5Q9NRC6 3674 aaKnown RBP6.62□□□□□ -1.35
VRK3-226ENST00000602029 DDX60Q8IY21 1712 aaKnown RBP6.62□□□□□ -1.35
VRK3-226ENST00000602029 MED23Q9ULK4 1368 aa6.61□□□□□ -1.35
VRK3-226ENST00000602029 ZNF804BA4D1E1 1349 aa6.61□□□□□ -1.35
VRK3-226ENST00000602029 CLRN2A0PK11 232 aa6.61□□□□□ -1.35
VRK3-226ENST00000602029 PI4KAP2A4QPH2 592 aa6.61□□□□□ -1.35
VRK3-226ENST00000602029 WNT10BO00744 389 aa6.61□□□□□ -1.35
VRK3-226ENST00000602029 ALDH1A1P00352 501 aa6.61□□□□□ -1.35
VRK3-226ENST00000602029 PTPN12Q05209 780 aaKnown RBP6.61□□□□□ -1.35
VRK3-226ENST00000602029 FKBP5Q13451 457 aaPredicted RBP6.61□□□□□ -1.35
VRK3-226ENST00000602029 OTUD7BQ6GQQ9 843 aa6.61□□□□□ -1.35
VRK3-226ENST00000602029 FBXO46Q6PJ61 603 aaPredicted RBP6.61□□□□□ -1.35
VRK3-226ENST00000602029 KSR2Q6VAB6 950 aa6.61□□□□□ -1.35
VRK3-226ENST00000602029 ZNF804AQ7Z570 1209 aa6.61□□□□□ -1.35
VRK3-226ENST00000602029 PI4KAP1Q8N8J0 262 aa6.61□□□□□ -1.35
VRK3-226ENST00000602029 C8orf58Q8NAV2 365 aa6.61□□□□□ -1.35
VRK3-226ENST00000602029 TSR2Q969E8 191 aaKnown RBP6.61□□□□□ -1.35
VRK3-226ENST00000602029 ANKRD2Q9GZV1 360 aa6.61□□□□□ -1.35
VRK3-226ENST00000602029 MYH16Q9H6N6 1097 aa6.61□□□□□ -1.35
VRK3-226ENST00000602029 BSDC1Q9NW68 430 aaPredicted RBP6.61□□□□□ -1.35
VRK3-226ENST00000602029 MINPP1Q9UNW1 487 aa6.61□□□□□ -1.35
VRK3-226ENST00000602029 FZD1Q9UP38 647 aa6.61□□□□□ -1.35
VRK3-226ENST00000602029 TAF1P21675 1872 aa6.61□□□□□ -1.35
VRK3-226ENST00000602029 LRRC37AA6NMS7 1700 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms