RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 USP26Q9BXU7 913 aa14.11□□□□□ -0.15
VRK3-223ENST00000601341 TMC4Q7Z404 712 aa14.11□□□□□ -0.15
VRK3-223ENST00000601341 HAUS7Q99871 368 aa14.11□□□□□ -0.15
VRK3-223ENST00000601341 COL4A1P02462 1669 aa14.11□□□□□ -0.15
VRK3-223ENST00000601341 ALDH1B1P30837 517 aa14.1□□□□□ -0.15
VRK3-223ENST00000601341 SKOR2Q2VWA4 1001 aaPredicted RBP14.1□□□□□ -0.15
VRK3-223ENST00000601341 MASTLQ96GX5 879 aa14.1□□□□□ -0.15
VRK3-223ENST00000601341 ZNF512BQ96KM6 892 aaPredicted RBP14.1□□□□□ -0.15
VRK3-223ENST00000601341 H0YIN7 160 aa14.09□□□□□ -0.15
VRK3-223ENST00000601341 KCNJ4P48050 445 aa14.09□□□□□ -0.15
VRK3-223ENST00000601341 R3HDM1Q15032 1099 aaKnown RBP14.09□□□□□ -0.15
VRK3-223ENST00000601341 DNAJC2Q99543 621 aaKnown RBP14.09□□□□□ -0.15
VRK3-223ENST00000601341 FSD2A1L4K1 749 aa14.09□□□□□ -0.15
VRK3-223ENST00000601341 SNAP23O00161 211 aa14.09□□□□□ -0.15
VRK3-223ENST00000601341 UQCRFS1P1P0C7P4 283 aa14.09□□□□□ -0.15
VRK3-223ENST00000601341 CHMLP26374 656 aa14.09□□□□□ -0.15
VRK3-223ENST00000601341 CCDC102BQ68D86 513 aa14.09□□□□□ -0.15
VRK3-223ENST00000601341 MTFR1LQ9H019 292 aa14.09□□□□□ -0.15
VRK3-223ENST00000601341 ANKIB1Q9P2G1 1089 aa14.09□□□□□ -0.15
VRK3-223ENST00000601341 CASZ1Q86V15 1759 aa14.09□□□□□ -0.15
VRK3-223ENST00000601341 XDHP47989 1333 aa14.08□□□□□ -0.16
VRK3-223ENST00000601341 C2CD5Q86YS7 1000 aa14.08□□□□□ -0.16
VRK3-223ENST00000601341 TAF1P21675 1872 aa14.07□□□□□ -0.16
VRK3-223ENST00000601341 HIP1O00291 1037 aa14.07□□□□□ -0.16
VRK3-223ENST00000601341 TRAK2O60296 914 aa14.07□□□□□ -0.16
VRK3-223ENST00000601341 ZBTB7AO95365 584 aa14.07□□□□□ -0.16
VRK3-223ENST00000601341 HSP90AA1P07900 732 aaKnown RBP14.07□□□□□ -0.16
VRK3-223ENST00000601341 PHKA1P46020 1223 aa14.07□□□□□ -0.16
VRK3-223ENST00000601341 CAVIN4Q5BKX8 364 aa14.07□□□□□ -0.16
VRK3-223ENST00000601341 STYK1Q6J9G0 422 aa14.07□□□□□ -0.16
VRK3-223ENST00000601341 TICAM2Q86XR7 235 aa14.07□□□□□ -0.16
VRK3-223ENST00000601341 IL17RAQ96F46 866 aa14.07□□□□□ -0.16
VRK3-223ENST00000601341 CWC22Q9HCG8 908 aaKnown RBP14.07□□□□□ -0.16
VRK3-223ENST00000601341 PAG1Q9NWQ8 432 aa14.07□□□□□ -0.16
VRK3-223ENST00000601341 LEMD3Q9Y2U8 911 aa14.07□□□□□ -0.16
VRK3-223ENST00000601341 SPEF2Q9C093 1822 aa14.07□□□□□ -0.16
VRK3-223ENST00000601341 ZNF804BA4D1E1 1349 aa14.07□□□□□ -0.16
VRK3-223ENST00000601341 PPEF1O14829 653 aaPredicted RBP14.06□□□□□ -0.16
VRK3-223ENST00000601341 POLD1P28340 1107 aa14.06□□□□□ -0.16
VRK3-223ENST00000601341 ARID4AP29374 1257 aaPredicted RBP14.06□□□□□ -0.16
VRK3-223ENST00000601341 SP8Q8IXZ3 490 aa14.06□□□□□ -0.16
VRK3-223ENST00000601341 ZNF622Q969S3 477 aaKnown RBP eCLIP14.06□□□□□ -0.16
VRK3-223ENST00000601341 FSD1Q9BTV5 496 aa14.06□□□□□ -0.16
VRK3-223ENST00000601341 DIAPH3Q9NSV4 1193 aa14.06□□□□□ -0.16
VRK3-223ENST00000601341 ANKRD31Q8N7Z5 1873 aa14.06□□□□□ -0.16
VRK3-223ENST00000601341 GOLIM4O00461 696 aa14.06□□□□□ -0.16
VRK3-223ENST00000601341 ST18O60284 1047 aa14.06□□□□□ -0.16
VRK3-223ENST00000601341 BCAMP50895 628 aa14.06□□□□□ -0.16
VRK3-223ENST00000601341 FKBP4Q02790 459 aaKnown RBP eCLIP14.06□□□□□ -0.16
VRK3-223ENST00000601341 TNPO1Q92973 898 aaKnown RBP14.06□□□□□ -0.16
VRK3-223ENST00000601341 TMX4Q9H1E5 349 aaPredicted RBP14.06□□□□□ -0.16
VRK3-223ENST00000601341 GNL3LQ9NVN8 582 aaKnown RBP14.06□□□□□ -0.16
VRK3-223ENST00000601341 ATP6V0A2Q9Y487 856 aa14.06□□□□□ -0.16
VRK3-223ENST00000601341 MCAMP43121 646 aa14.05□□□□□ -0.16
VRK3-223ENST00000601341 NUCB2P80303 420 aa14.05□□□□□ -0.16
VRK3-223ENST00000601341 VPS37DQ86XT2 251 aa14.05□□□□□ -0.16
VRK3-223ENST00000601341 KBTBD3Q8NAB2 608 aa14.05□□□□□ -0.16
VRK3-223ENST00000601341 SPRYD3Q8NCJ5 442 aa14.05□□□□□ -0.16
VRK3-223ENST00000601341 RUFY2Q8WXA3 655 aa14.05□□□□□ -0.16
VRK3-223ENST00000601341 EDC3Q96F86 508 aaKnown RBP14.05□□□□□ -0.16
VRK3-223ENST00000601341 ESYT1Q9BSJ8 1104 aa14.05□□□□□ -0.16
VRK3-223ENST00000601341 SNRKQ9NRH2 765 aa14.05□□□□□ -0.16
VRK3-223ENST00000601341 NSFL1CQ9UNZ2 370 aaKnown RBP14.05□□□□□ -0.16
VRK3-223ENST00000601341 ATF5Q9Y2D1 282 aaPredicted RBP14.05□□□□□ -0.16
VRK3-223ENST00000601341 NDUFB9Q9Y6M9 179 aa14.05□□□□□ -0.16
VRK3-223ENST00000601341 C10orf71Q711Q0 1435 aa14.05□□□□□ -0.16
VRK3-223ENST00000601341 GOLGA6L3A6NEY3 463 aa14.04□□□□□ -0.16
VRK3-223ENST00000601341 WTIPA6NIX2 430 aaPredicted RBP14.04□□□□□ -0.16
VRK3-223ENST00000601341 ATP2B4P23634 1241 aa14.04□□□□□ -0.16
VRK3-223ENST00000601341 ZAP70P43403 619 aa14.04□□□□□ -0.16
VRK3-223ENST00000601341 MCM2P49736 904 aa14.04□□□□□ -0.16
VRK3-223ENST00000601341 ANAPC15P60006 121 aa14.04□□□□□ -0.16
VRK3-223ENST00000601341 GPSM2P81274 684 aa14.04□□□□□ -0.16
VRK3-223ENST00000601341 SCARF1Q14162 830 aa14.04□□□□□ -0.16
VRK3-223ENST00000601341 CNKSR1Q969H4 720 aa14.04□□□□□ -0.16
VRK3-223ENST00000601341 FAM84BQ96KN1 310 aaPredicted RBP14.04□□□□□ -0.16
VRK3-223ENST00000601341 PODXL2Q9NZ53 605 aa14.04□□□□□ -0.16
VRK3-223ENST00000601341 RFX7Q2KHR2 1363 aa14.04□□□□□ -0.16
VRK3-223ENST00000601341 GOLGA6L22H0YM25 854 aa14.04□□□□□ -0.16
VRK3-223ENST00000601341 CD2BP2O95400 341 aaKnown RBP14.04□□□□□ -0.16
VRK3-223ENST00000601341 GYG1P46976 350 aa14.04□□□□□ -0.16
VRK3-223ENST00000601341 TTF1Q15361 905 aaPredicted RBP14.04□□□□□ -0.16
VRK3-223ENST00000601341 LRRFIP1Q32MZ4 808 aaKnown RBP14.04□□□□□ -0.16
VRK3-223ENST00000601341 GGA1Q9UJY5 639 aa14.04□□□□□ -0.16
VRK3-223ENST00000601341 CHRNA5P30532 468 aa14.03□□□□□ -0.16
VRK3-223ENST00000601341 HIBADHP31937 336 aaKnown RBP14.03□□□□□ -0.16
VRK3-223ENST00000601341 RASGRF1Q13972 1273 aa14.03□□□□□ -0.16
VRK3-223ENST00000601341 CWC27Q6UX04 472 aaKnown RBP14.03□□□□□ -0.16
VRK3-223ENST00000601341 FBXO33Q7Z6M2 555 aa14.03□□□□□ -0.16
VRK3-223ENST00000601341 SPATA5Q8NB90 893 aa14.03□□□□□ -0.16
VRK3-223ENST00000601341 HMG20BQ9P0W2 317 aa14.03□□□□□ -0.16
VRK3-223ENST00000601341 ARAP2Q8WZ64 1704 aa14.02□□□□□ -0.16
VRK3-223ENST00000601341 PSDA5PKW4 1024 aaPredicted RBP14.02□□□□□ -0.16
VRK3-223ENST00000601341 UFL1O94874 794 aa14.02□□□□□ -0.16
VRK3-223ENST00000601341 PRPF40BQ6NWY9 871 aaKnown RBP14.02□□□□□ -0.16
VRK3-223ENST00000601341 PI16Q6UXB8 463 aa14.02□□□□□ -0.16
VRK3-223ENST00000601341 C15orf52Q6ZUT6 534 aaKnown RBP14.02□□□□□ -0.16
VRK3-223ENST00000601341 BRPF3Q9ULD4 1205 aa14.02□□□□□ -0.16
VRK3-223ENST00000601341 SEMA3EO15041 775 aa14.01□□□□□ -0.17
VRK3-223ENST00000601341 SGSM2O43147 1006 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms