RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 ZC3H12CQ9C0D7 883 aaKnown RBP20.32■□□□□ 0.84
LSM4-206ENST00000600289 HDAC5Q9UQL6 1122 aa20.32■□□□□ 0.84
LSM4-206ENST00000600289 ZNF609O15014 1411 aa20.32■□□□□ 0.84
LSM4-206ENST00000600289 YDJCA8MPS7 323 aa20.31■□□□□ 0.84
LSM4-206ENST00000600289 AOC2O75106 756 aa20.31■□□□□ 0.84
LSM4-206ENST00000600289 GRM1Q13255 1194 aa20.31■□□□□ 0.84
LSM4-206ENST00000600289 DGKZQ13574 1117 aa20.31■□□□□ 0.84
LSM4-206ENST00000600289 PRPF38BQ5VTL8 546 aaKnown RBP20.31■□□□□ 0.84
LSM4-206ENST00000600289 PAXIP1Q6ZW49 1069 aaPredicted RBP20.31■□□□□ 0.84
LSM4-206ENST00000600289 RIMBP2O15034 1052 aa20.3■□□□□ 0.84
LSM4-206ENST00000600289 UBTFL1P0CB47 393 aaPredicted RBP20.3■□□□□ 0.84
LSM4-206ENST00000600289 CHRNDQ07001 517 aa20.3■□□□□ 0.84
LSM4-206ENST00000600289 CIAPIN1Q6FI81 312 aa20.3■□□□□ 0.84
LSM4-206ENST00000600289 FRAT1Q92837 279 aaPredicted RBP20.3■□□□□ 0.84
LSM4-206ENST00000600289 ECE2O60344 883 aa20.29■□□□□ 0.84
LSM4-206ENST00000600289 SCNN1DP51172 638 aa20.29■□□□□ 0.84
LSM4-206ENST00000600289 TNIP1Q15025 636 aa20.29■□□□□ 0.84
LSM4-206ENST00000600289 TAF7LQ5H9L4 462 aa20.29■□□□□ 0.84
LSM4-206ENST00000600289 GJA3Q9Y6H8 435 aa20.29■□□□□ 0.84
LSM4-206ENST00000600289 ZNF804BA4D1E1 1349 aa20.28■□□□□ 0.84
LSM4-206ENST00000600289 MAP2K2P36507 400 aa20.28■□□□□ 0.84
LSM4-206ENST00000600289 CST9Q5W186 159 aa20.28■□□□□ 0.84
LSM4-206ENST00000600289 LDHAL6AQ6ZMR3 332 aa20.28■□□□□ 0.84
LSM4-206ENST00000600289 ZNF594Q96JF6 807 aaPredicted RBP20.28■□□□□ 0.84
LSM4-206ENST00000600289 DBNDD1Q9H9R9 158 aa20.28■□□□□ 0.84
LSM4-206ENST00000600289 GNAI3P08754 354 aa20.27■□□□□ 0.84
LSM4-206ENST00000600289 C15orf52Q6ZUT6 534 aaKnown RBP20.27■□□□□ 0.84
LSM4-206ENST00000600289 MEIS3Q99687 375 aa20.27■□□□□ 0.84
LSM4-206ENST00000600289 TLL2Q9Y6L7 1015 aa20.27■□□□□ 0.84
LSM4-206ENST00000600289 IRS2Q9Y4H2 1338 aa20.27■□□□□ 0.83
LSM4-206ENST00000600289 CA12O43570 354 aa20.26■□□□□ 0.83
LSM4-206ENST00000600289 LMOD1P29536 600 aaPredicted RBP20.26■□□□□ 0.83
LSM4-206ENST00000600289 SOX10P56693 466 aa20.26■□□□□ 0.83
LSM4-206ENST00000600289 DOK7Q18PE1 504 aa20.26■□□□□ 0.83
LSM4-206ENST00000600289 PODNQ7Z5L7 613 aa20.26■□□□□ 0.83
LSM4-206ENST00000600289 CNNM1Q9NRU3 951 aa20.26■□□□□ 0.83
LSM4-206ENST00000600289 TNNQ9UQP3 1299 aa20.26■□□□□ 0.83
LSM4-206ENST00000600289 ARAP2Q8WZ64 1704 aa20.26■□□□□ 0.83
LSM4-206ENST00000600289 MROH5Q6ZUA9 1318 aa20.26■□□□□ 0.83
LSM4-206ENST00000600289 RAD17O75943 681 aa20.25■□□□□ 0.83
LSM4-206ENST00000600289 RFX5P48382 616 aaPredicted RBP20.25■□□□□ 0.83
LSM4-206ENST00000600289 GPRC5DQ9NZD1 345 aa20.25■□□□□ 0.83
LSM4-206ENST00000600289 RIPOR2Q9Y4F9 1068 aa20.25■□□□□ 0.83
LSM4-206ENST00000600289 WTIPA6NIX2 430 aaPredicted RBP20.24■□□□□ 0.83
LSM4-206ENST00000600289 RPS12P25398 132 aaKnown RBP20.24■□□□□ 0.83
LSM4-206ENST00000600289 DPF2Q92785 391 aa20.24■□□□□ 0.83
LSM4-206ENST00000600289 COA1Q9GZY4 146 aa20.24■□□□□ 0.83
LSM4-206ENST00000600289 FBXO3Q9UK99 471 aa20.24■□□□□ 0.83
LSM4-206ENST00000600289 LRRFIP2Q9Y608 721 aaKnown RBP20.24■□□□□ 0.83
LSM4-206ENST00000600289 TRAF5O00463 557 aa20.23■□□□□ 0.83
LSM4-206ENST00000600289 PSMD14O00487 310 aa20.23■□□□□ 0.83
LSM4-206ENST00000600289 GMPSP49915 693 aaPredicted RBP20.23■□□□□ 0.83
LSM4-206ENST00000600289 MTX1Q13505 466 aa20.23■□□□□ 0.83
LSM4-206ENST00000600289 DZIP1LQ8IYY4 767 aaKnown RBP20.23■□□□□ 0.83
LSM4-206ENST00000600289 TMEM57Q8N5G2 664 aa20.23■□□□□ 0.83
LSM4-206ENST00000600289 CLUAP1Q96AJ1 413 aa20.23■□□□□ 0.83
LSM4-206ENST00000600289 MYH13Q9UKX3 1938 aa20.23■□□□□ 0.83
LSM4-206ENST00000600289 G3V3G9 751 aa20.22■□□□□ 0.83
LSM4-206ENST00000600289 TAF5LO75529 589 aa20.22■□□□□ 0.83
LSM4-206ENST00000600289 VIL1P09327 827 aaKnown RBP20.22■□□□□ 0.83
LSM4-206ENST00000600289 KCNJ4P48050 445 aa20.22■□□□□ 0.83
LSM4-206ENST00000600289 DCAF8Q5TAQ9 597 aa20.22■□□□□ 0.83
LSM4-206ENST00000600289 USP50Q70EL3 339 aaPredicted RBP20.22■□□□□ 0.83
LSM4-206ENST00000600289 TXNRD3Q86VQ6 643 aa20.22■□□□□ 0.83
LSM4-206ENST00000600289 PUS3Q9BZE2 481 aaKnown RBP20.22■□□□□ 0.83
LSM4-206ENST00000600289 EPS15P42566 896 aa20.21■□□□□ 0.83
LSM4-206ENST00000600289 PTPN12Q05209 780 aaKnown RBP20.21■□□□□ 0.83
LSM4-206ENST00000600289 UBE4AQ14139 1066 aa20.21■□□□□ 0.83
LSM4-206ENST00000600289 FTSJ3Q8IY81 847 aaKnown RBP20.21■□□□□ 0.83
LSM4-206ENST00000600289 VGLL2Q8N8G2 317 aa20.21■□□□□ 0.83
LSM4-206ENST00000600289 KCNQ5Q9NR82 932 aa20.21■□□□□ 0.83
LSM4-206ENST00000600289 ADARB2Q9NS39 739 aaKnown RBP20.21■□□□□ 0.83
LSM4-206ENST00000600289 RCAN3Q9UKA8 241 aa20.21■□□□□ 0.83
LSM4-206ENST00000600289 MS4A1P11836 297 aa20.2■□□□□ 0.82
LSM4-206ENST00000600289 KLRK1P26718 216 aa20.2■□□□□ 0.82
LSM4-206ENST00000600289 HELBQ8NG08 1087 aaPredicted RBP20.2■□□□□ 0.82
LSM4-206ENST00000600289 EYA2O00167 538 aa20.19■□□□□ 0.82
LSM4-206ENST00000600289 CIAO1O76071 339 aa20.19■□□□□ 0.82
LSM4-206ENST00000600289 GNAI2P04899 355 aa20.19■□□□□ 0.82
LSM4-206ENST00000600289 RLBP1P12271 317 aa20.19■□□□□ 0.82
LSM4-206ENST00000600289 LRRC24Q50LG9 513 aa20.19■□□□□ 0.82
LSM4-206ENST00000600289 SAPCD2Q86UD0 394 aa20.19■□□□□ 0.82
LSM4-206ENST00000600289 AGBL3Q8NEM8 1001 aa20.19■□□□□ 0.82
LSM4-206ENST00000600289 KLHDC4Q8TBB5 520 aa20.19■□□□□ 0.82
LSM4-206ENST00000600289 COPRSQ9NQ92 184 aa20.19■□□□□ 0.82
LSM4-206ENST00000600289 USP17L3A6NCW0 530 aa20.18■□□□□ 0.82
LSM4-206ENST00000600289 USP17L4A6NCW7 530 aa20.18■□□□□ 0.82
LSM4-206ENST00000600289 PDE8BO95263 885 aa20.18■□□□□ 0.82
LSM4-206ENST00000600289 RSBN1LQ6PCB5 846 aaPredicted RBP20.18■□□□□ 0.82
LSM4-206ENST00000600289 USP17L1Q7RTZ2 530 aa20.18■□□□□ 0.82
LSM4-206ENST00000600289 ZBTB12Q9Y330 459 aaPredicted RBP20.18■□□□□ 0.82
LSM4-206ENST00000600289 ECM29Q5VYK3 1845 aa20.18■□□□□ 0.82
LSM4-206ENST00000600289 SNAP23O00161 211 aa20.17■□□□□ 0.82
LSM4-206ENST00000600289 IL1R1P14778 569 aa20.17■□□□□ 0.82
LSM4-206ENST00000600289 STRIP1Q5VSL9 837 aa20.17■□□□□ 0.82
LSM4-206ENST00000600289 ZNF804AQ7Z570 1209 aa20.17■□□□□ 0.82
LSM4-206ENST00000600289 GMLQ99445 158 aa20.17■□□□□ 0.82
LSM4-206ENST00000600289 CD209Q9NNX6 404 aa20.17■□□□□ 0.82
LSM4-206ENST00000600289 CNOT7Q9UIV1 285 aaKnown RBP20.17■□□□□ 0.82
LSM4-206ENST00000600289 MYO3BQ8WXR4 1341 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms