RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 RBM46Q8TBY0 533 aaKnown RBP18.98■□□□□ 0.63
LIG1-219ENST00000600055 COG6Q9Y2V7 657 aa18.98■□□□□ 0.63
LIG1-219ENST00000600055 A0A1B0GUL6 1792 aa18.98■□□□□ 0.63
LIG1-219ENST00000600055 PNMA6EA0A0J9YXQ4 647 aa18.97■□□□□ 0.63
LIG1-219ENST00000600055 SHTN1A0MZ66 631 aa18.97■□□□□ 0.63
LIG1-219ENST00000600055 MS4A1P11836 297 aa18.97■□□□□ 0.63
LIG1-219ENST00000600055 LMOD1P29536 600 aaPredicted RBP18.97■□□□□ 0.63
LIG1-219ENST00000600055 UBE4AQ14139 1066 aa18.97■□□□□ 0.63
LIG1-219ENST00000600055 C15orf52Q6ZUT6 534 aaKnown RBP18.97■□□□□ 0.63
LIG1-219ENST00000600055 PODNQ7Z5L7 613 aa18.97■□□□□ 0.63
LIG1-219ENST00000600055 VGLL2Q8N8G2 317 aa18.97■□□□□ 0.63
LIG1-219ENST00000600055 COA1Q9GZY4 146 aa18.97■□□□□ 0.63
LIG1-219ENST00000600055 GPRC5DQ9NZD1 345 aa18.97■□□□□ 0.63
LIG1-219ENST00000600055 VIL1P09327 827 aaKnown RBP18.96■□□□□ 0.63
LIG1-219ENST00000600055 MVPQ14764 893 aaKnown RBP18.96■□□□□ 0.63
LIG1-219ENST00000600055 EAPPQ56P03 285 aaPredicted RBP18.96■□□□□ 0.63
LIG1-219ENST00000600055 COPRSQ9NQ92 184 aa18.96■□□□□ 0.63
LIG1-219ENST00000600055 SCN9AQ15858 1988 aa18.95■□□□□ 0.62
LIG1-219ENST00000600055 PDE8BO95263 885 aa18.95■□□□□ 0.62
LIG1-219ENST00000600055 FBXW7Q969H0 707 aa18.95■□□□□ 0.62
LIG1-219ENST00000600055 MXD3Q9BW11 206 aa18.95■□□□□ 0.62
LIG1-219ENST00000600055 CD209Q9NNX6 404 aa18.95■□□□□ 0.62
LIG1-219ENST00000600055 USP17L3A6NCW0 530 aa18.94■□□□□ 0.62
LIG1-219ENST00000600055 USP17L4A6NCW7 530 aa18.94■□□□□ 0.62
LIG1-219ENST00000600055 CIAO1O76071 339 aa18.94■□□□□ 0.62
LIG1-219ENST00000600055 GYG1P46976 350 aa18.94■□□□□ 0.62
LIG1-219ENST00000600055 USP17L1Q7RTZ2 530 aa18.94■□□□□ 0.62
LIG1-219ENST00000600055 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.94■□□□□ 0.62
LIG1-219ENST00000600055 CNOT7Q9UIV1 285 aaKnown RBP18.94■□□□□ 0.62
LIG1-219ENST00000600055 SCN4AP35499 1836 aa18.94■□□□□ 0.62
LIG1-219ENST00000600055 ATP8B2P98198 1209 aa18.93■□□□□ 0.62
LIG1-219ENST00000600055 RSBN1LQ6PCB5 846 aaPredicted RBP18.93■□□□□ 0.62
LIG1-219ENST00000600055 ZNF804AQ7Z570 1209 aa18.93■□□□□ 0.62
LIG1-219ENST00000600055 MICALL2Q8IY33 904 aa18.93■□□□□ 0.62
LIG1-219ENST00000600055 SMC1BQ8NDV3 1235 aa18.93■□□□□ 0.62
LIG1-219ENST00000600055 FAM84BQ96KN1 310 aaPredicted RBP18.93■□□□□ 0.62
LIG1-219ENST00000600055 FBXO3Q9UK99 471 aa18.93■□□□□ 0.62
LIG1-219ENST00000600055 FGFR2P21802 821 aa18.92■□□□□ 0.62
LIG1-219ENST00000600055 IL15P40933 162 aaPredicted RBP18.92■□□□□ 0.62
LIG1-219ENST00000600055 GTF2IP78347 998 aa18.92■□□□□ 0.62
LIG1-219ENST00000600055 PDE3AQ14432 1141 aa18.92■□□□□ 0.62
LIG1-219ENST00000600055 DACT2Q5SW24 774 aa18.92■□□□□ 0.62
LIG1-219ENST00000600055 LDHDQ86WU2 507 aa18.92■□□□□ 0.62
LIG1-219ENST00000600055 DPF2Q92785 391 aa18.92■□□□□ 0.62
LIG1-219ENST00000600055 ADARB2Q9NS39 739 aaKnown RBP18.92■□□□□ 0.62
LIG1-219ENST00000600055 CLEC11AQ9Y240 323 aa18.92■□□□□ 0.62
LIG1-219ENST00000600055 IL1R1P14778 569 aa18.91■□□□□ 0.62
LIG1-219ENST00000600055 RPS12P25398 132 aaKnown RBP18.91■□□□□ 0.62
LIG1-219ENST00000600055 HIBADHP31937 336 aaKnown RBP18.91■□□□□ 0.62
LIG1-219ENST00000600055 FSTL1Q12841 308 aa18.91■□□□□ 0.62
LIG1-219ENST00000600055 POLA2Q14181 598 aa18.91■□□□□ 0.62
LIG1-219ENST00000600055 PUM3Q15397 648 aaKnown RBP18.91■□□□□ 0.62
LIG1-219ENST00000600055 TTLL5Q6EMB2 1281 aa18.91■□□□□ 0.62
LIG1-219ENST00000600055 CHADLQ6NUI6 762 aa18.91■□□□□ 0.62
LIG1-219ENST00000600055 PNMA8AQ86V59 439 aaPredicted RBP18.91■□□□□ 0.62
LIG1-219ENST00000600055 TRPM4Q8TD43 1214 aa18.91■□□□□ 0.62
LIG1-219ENST00000600055 GMLQ99445 158 aa18.91■□□□□ 0.62
LIG1-219ENST00000600055 CEP126Q9P2H0 1117 aa18.91■□□□□ 0.62
LIG1-219ENST00000600055 DDX19BQ9UMR2 479 aa18.91■□□□□ 0.62
LIG1-219ENST00000600055 JAG2Q9Y219 1238 aa18.91■□□□□ 0.62
LIG1-219ENST00000600055 H7C1D1 291 aa18.9■□□□□ 0.62
LIG1-219ENST00000600055 HIRAP54198 1017 aaPredicted RBP18.9■□□□□ 0.62
LIG1-219ENST00000600055 STRIP1Q5VSL9 837 aa18.9■□□□□ 0.62
LIG1-219ENST00000600055 CEP85Q6P2H3 762 aa18.9■□□□□ 0.62
LIG1-219ENST00000600055 USP50Q70EL3 339 aaPredicted RBP18.9■□□□□ 0.62
LIG1-219ENST00000600055 SAMD7Q7Z3H4 446 aa18.9■□□□□ 0.62
LIG1-219ENST00000600055 FBXO33Q7Z6M2 555 aa18.9■□□□□ 0.62
LIG1-219ENST00000600055 SSH3Q8TE77 659 aa18.9■□□□□ 0.62
LIG1-219ENST00000600055 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.9■□□□□ 0.62
LIG1-219ENST00000600055 EGFRP00533 1210 aa18.89■□□□□ 0.61
LIG1-219ENST00000600055 IFIT1P09914 478 aaKnown RBP18.89■□□□□ 0.61
LIG1-219ENST00000600055 BCAMP50895 628 aa18.89■□□□□ 0.61
LIG1-219ENST00000600055 RRP1P56182 461 aaKnown RBP18.89■□□□□ 0.61
LIG1-219ENST00000600055 AGBL3Q8NEM8 1001 aa18.89■□□□□ 0.61
LIG1-219ENST00000600055 ZBTB40Q9NUA8 1239 aa18.89■□□□□ 0.61
LIG1-219ENST00000600055 SLC5A1P13866 664 aa18.88■□□□□ 0.61
LIG1-219ENST00000600055 TFCP2Q12800 502 aa18.88■□□□□ 0.61
LIG1-219ENST00000600055 ATP2B3Q16720 1220 aa18.88■□□□□ 0.61
LIG1-219ENST00000600055 TBC1D10BQ4KMP7 808 aaPredicted RBP18.88■□□□□ 0.61
LIG1-219ENST00000600055 RBM26Q5T8P6 1007 aaKnown RBP18.88■□□□□ 0.61
LIG1-219ENST00000600055 MAP1SQ66K74 1059 aaPredicted RBP18.88■□□□□ 0.61
LIG1-219ENST00000600055 TDRD7Q8NHU6 1098 aaKnown RBP18.88■□□□□ 0.61
LIG1-219ENST00000600055 LPIN2Q92539 896 aa18.88■□□□□ 0.61
LIG1-219ENST00000600055 IQSEC3Q9UPP2 1182 aaPredicted RBP18.88■□□□□ 0.61
LIG1-219ENST00000600055 ZNF609O15014 1411 aa18.87■□□□□ 0.61
LIG1-219ENST00000600055 G3BP1Q13283 466 aaKnown RBP eCLIP18.87■□□□□ 0.61
LIG1-219ENST00000600055 CAVIN4Q5BKX8 364 aa18.87■□□□□ 0.61
LIG1-219ENST00000600055 VPS37DQ86XT2 251 aa18.87■□□□□ 0.61
LIG1-219ENST00000600055 CERS5Q8N5B7 392 aa18.87■□□□□ 0.61
LIG1-219ENST00000600055 ADAMTSL1Q8N6G6 1762 aa18.87■□□□□ 0.61
LIG1-219ENST00000600055 PSME4Q14997 1843 aa18.86■□□□□ 0.61
LIG1-219ENST00000600055 SASH1O94885 1247 aa18.86■□□□□ 0.61
LIG1-219ENST00000600055 USP17L8P0C7I0 530 aa18.86■□□□□ 0.61
LIG1-219ENST00000600055 HSPA6P17066 643 aa18.86■□□□□ 0.61
LIG1-219ENST00000600055 ZNF280AP59817 542 aaPredicted RBP18.86■□□□□ 0.61
LIG1-219ENST00000600055 ZNF646O15015 1829 aaPredicted RBP18.86■□□□□ 0.61
LIG1-219ENST00000600055 SURF6O75683 361 aaKnown RBP18.85■□□□□ 0.61
LIG1-219ENST00000600055 ADORA1P30542 326 aa18.85■□□□□ 0.61
LIG1-219ENST00000600055 TIMM10P62072 90 aa18.85■□□□□ 0.61
LIG1-219ENST00000600055 KIF4BQ2VIQ3 1234 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms