RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 PSMD14O00487 310 aa24.34■■□□□ 1.49
SHKBP1-221ENST00000599833 PDE8BO95263 885 aa24.34■■□□□ 1.49
SHKBP1-221ENST00000599833 ATP8B2P98198 1209 aa24.34■■□□□ 1.49
SHKBP1-221ENST00000599833 UBE4AQ14139 1066 aa24.34■■□□□ 1.49
SHKBP1-221ENST00000599833 SSH3Q8TE77 659 aa24.34■■□□□ 1.49
SHKBP1-221ENST00000599833 GJA3Q9Y6H8 435 aa24.34■■□□□ 1.49
SHKBP1-221ENST00000599833 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP24.34■■□□□ 1.49
SHKBP1-221ENST00000599833 ARAP2Q8WZ64 1704 aa24.34■■□□□ 1.49
SHKBP1-221ENST00000599833 RRP1P56182 461 aaKnown RBP24.33■■□□□ 1.49
SHKBP1-221ENST00000599833 PODNQ7Z5L7 613 aa24.33■■□□□ 1.49
SHKBP1-221ENST00000599833 COA1Q9GZY4 146 aa24.33■■□□□ 1.49
SHKBP1-221ENST00000599833 SIL1Q9H173 461 aa24.33■■□□□ 1.49
SHKBP1-221ENST00000599833 TAF1DQ9H5J8 278 aaPredicted RBP24.33■■□□□ 1.49
SHKBP1-221ENST00000599833 CEP350Q5VT06 3117 aa24.33■■□□□ 1.49
SHKBP1-221ENST00000599833 VIL1P09327 827 aaKnown RBP24.32■■□□□ 1.48
SHKBP1-221ENST00000599833 METTL24Q5JXM2 366 aa24.32■■□□□ 1.48
SHKBP1-221ENST00000599833 CEP85Q6P2H3 762 aa24.32■■□□□ 1.48
SHKBP1-221ENST00000599833 DDX19BQ9UMR2 479 aa24.32■■□□□ 1.48
SHKBP1-221ENST00000599833 POTEIP0CG38 1075 aa24.31■■□□□ 1.48
SHKBP1-221ENST00000599833 POTEJP0CG39 1038 aa24.31■■□□□ 1.48
SHKBP1-221ENST00000599833 GMPSP49915 693 aaPredicted RBP24.31■■□□□ 1.48
SHKBP1-221ENST00000599833 CD209Q9NNX6 404 aa24.31■■□□□ 1.48
SHKBP1-221ENST00000599833 GPRC5DQ9NZD1 345 aa24.31■■□□□ 1.48
SHKBP1-221ENST00000599833 ZBTB12Q9Y330 459 aaPredicted RBP24.31■■□□□ 1.48
SHKBP1-221ENST00000599833 SHTN1A0MZ66 631 aa24.3■■□□□ 1.48
SHKBP1-221ENST00000599833 EPS15P42566 896 aa24.3■■□□□ 1.48
SHKBP1-221ENST00000599833 KCNJ4P48050 445 aa24.3■■□□□ 1.48
SHKBP1-221ENST00000599833 TNIP1Q15025 636 aa24.3■■□□□ 1.48
SHKBP1-221ENST00000599833 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.3■■□□□ 1.48
SHKBP1-221ENST00000599833 FAM84BQ96KN1 310 aaPredicted RBP24.3■■□□□ 1.48
SHKBP1-221ENST00000599833 GMLQ99445 158 aa24.3■■□□□ 1.48
SHKBP1-221ENST00000599833 TOMM70O94826 608 aa24.29■■□□□ 1.48
SHKBP1-221ENST00000599833 IL1R1P14778 569 aa24.29■■□□□ 1.48
SHKBP1-221ENST00000599833 IL15P40933 162 aaPredicted RBP24.29■■□□□ 1.48
SHKBP1-221ENST00000599833 SIRT2Q8IXJ6 389 aa24.29■■□□□ 1.48
SHKBP1-221ENST00000599833 HACL1Q9UJ83 578 aa24.29■■□□□ 1.48
SHKBP1-221ENST00000599833 IQCA1LA6NCM1 817 aa24.28■■□□□ 1.48
SHKBP1-221ENST00000599833 DACT2Q5SW24 774 aa24.28■■□□□ 1.48
SHKBP1-221ENST00000599833 EPHX2P34913 555 aa24.27■■□□□ 1.48
SHKBP1-221ENST00000599833 GYG1P46976 350 aa24.27■■□□□ 1.48
SHKBP1-221ENST00000599833 PUM3Q15397 648 aaKnown RBP24.27■■□□□ 1.48
SHKBP1-221ENST00000599833 FBXO33Q7Z6M2 555 aa24.27■■□□□ 1.48
SHKBP1-221ENST00000599833 DPF2Q92785 391 aa24.27■■□□□ 1.48
SHKBP1-221ENST00000599833 USP17L3A6NCW0 530 aa24.26■■□□□ 1.47
SHKBP1-221ENST00000599833 USP17L4A6NCW7 530 aa24.26■■□□□ 1.47
SHKBP1-221ENST00000599833 SASH1O94885 1247 aa24.26■■□□□ 1.47
SHKBP1-221ENST00000599833 C1QTNF8P60827 252 aa24.26■■□□□ 1.47
SHKBP1-221ENST00000599833 RSBN1LQ6PCB5 846 aaPredicted RBP24.26■■□□□ 1.47
SHKBP1-221ENST00000599833 USP17L1Q7RTZ2 530 aa24.26■■□□□ 1.47
SHKBP1-221ENST00000599833 RBM46Q8TBY0 533 aaKnown RBP24.26■■□□□ 1.47
SHKBP1-221ENST00000599833 MXD3Q9BW11 206 aa24.26■■□□□ 1.47
SHKBP1-221ENST00000599833 NOP58Q9Y2X3 529 aaKnown RBP24.26■■□□□ 1.47
SHKBP1-221ENST00000599833 STRIP1Q5VSL9 837 aa24.25■■□□□ 1.47
SHKBP1-221ENST00000599833 TDRD7Q8NHU6 1098 aaKnown RBP24.25■■□□□ 1.47
SHKBP1-221ENST00000599833 RPS12P25398 132 aaKnown RBP24.24■■□□□ 1.47
SHKBP1-221ENST00000599833 G3V3G9 751 aa24.23■■□□□ 1.47
SHKBP1-221ENST00000599833 EGFRP00533 1210 aa24.23■■□□□ 1.47
SHKBP1-221ENST00000599833 HIRAP54198 1017 aaPredicted RBP24.23■■□□□ 1.47
SHKBP1-221ENST00000599833 TFCP2Q12800 502 aa24.23■■□□□ 1.47
SHKBP1-221ENST00000599833 DCAF8Q5TAQ9 597 aa24.23■■□□□ 1.47
SHKBP1-221ENST00000599833 ZNF804AQ7Z570 1209 aa24.23■■□□□ 1.47
SHKBP1-221ENST00000599833 CERS5Q8N5B7 392 aa24.23■■□□□ 1.47
SHKBP1-221ENST00000599833 LPIN2Q92539 896 aa24.23■■□□□ 1.47
SHKBP1-221ENST00000599833 CEP126Q9P2H0 1117 aa24.23■■□□□ 1.47
SHKBP1-221ENST00000599833 CNOT7Q9UIV1 285 aaKnown RBP24.23■■□□□ 1.47
SHKBP1-221ENST00000599833 COL1A1P02452 1464 aaPredicted RBP24.23■■□□□ 1.47
SHKBP1-221ENST00000599833 HIBADHP31937 336 aaKnown RBP24.22■■□□□ 1.47
SHKBP1-221ENST00000599833 MICALL2Q8IY33 904 aa24.22■■□□□ 1.47
SHKBP1-221ENST00000599833 AGBL3Q8NEM8 1001 aa24.22■■□□□ 1.47
SHKBP1-221ENST00000599833 TRPM4Q8TD43 1214 aa24.22■■□□□ 1.47
SHKBP1-221ENST00000599833 MYH13Q9UKX3 1938 aa24.22■■□□□ 1.47
SHKBP1-221ENST00000599833 FAM205AQ6ZU69 1335 aa24.21■■□□□ 1.47
SHKBP1-221ENST00000599833 BCAMP50895 628 aa24.21■■□□□ 1.47
SHKBP1-221ENST00000599833 ZNF280AP59817 542 aaPredicted RBP24.21■■□□□ 1.47
SHKBP1-221ENST00000599833 GTF2IP78347 998 aa24.21■■□□□ 1.47
SHKBP1-221ENST00000599833 ATP2B3Q16720 1220 aa24.21■■□□□ 1.47
SHKBP1-221ENST00000599833 ADARB2Q9NS39 739 aaKnown RBP24.21■■□□□ 1.47
SHKBP1-221ENST00000599833 LMOD1P29536 600 aaPredicted RBP24.2■■□□□ 1.46
SHKBP1-221ENST00000599833 ADORA1P30542 326 aa24.2■■□□□ 1.46
SHKBP1-221ENST00000599833 TTLL5Q6EMB2 1281 aa24.2■■□□□ 1.46
SHKBP1-221ENST00000599833 RPAP2Q8IXW5 612 aaPredicted RBP24.2■■□□□ 1.46
SHKBP1-221ENST00000599833 ZBTB22O15209 634 aa24.19■■□□□ 1.46
SHKBP1-221ENST00000599833 USP50Q70EL3 339 aaPredicted RBP24.19■■□□□ 1.46
SHKBP1-221ENST00000599833 LDHDQ86WU2 507 aa24.19■■□□□ 1.46
SHKBP1-221ENST00000599833 IFIT1P09914 478 aaKnown RBP24.18■■□□□ 1.46
SHKBP1-221ENST00000599833 SLC5A1P13866 664 aa24.18■■□□□ 1.46
SHKBP1-221ENST00000599833 FSTL1Q12841 308 aa24.18■■□□□ 1.46
SHKBP1-221ENST00000599833 PNMA8AQ86V59 439 aaPredicted RBP24.18■■□□□ 1.46
SHKBP1-221ENST00000599833 C16orf71Q8IYS4 520 aaPredicted RBP24.18■■□□□ 1.46
SHKBP1-221ENST00000599833 PGAP2Q9UHJ9 254 aa24.18■■□□□ 1.46
SHKBP1-221ENST00000599833 SURF6O75683 361 aaKnown RBP24.17■■□□□ 1.46
SHKBP1-221ENST00000599833 TIMM10P62072 90 aa24.17■■□□□ 1.46
SHKBP1-221ENST00000599833 FKBP1AP62942 108 aaKnown RBP24.17■■□□□ 1.46
SHKBP1-221ENST00000599833 SAMD7Q7Z3H4 446 aa24.17■■□□□ 1.46
SHKBP1-221ENST00000599833 SMC1BQ8NDV3 1235 aa24.17■■□□□ 1.46
SHKBP1-221ENST00000599833 CRBNQ96SW2 442 aa24.17■■□□□ 1.46
SHKBP1-221ENST00000599833 JAG2Q9Y219 1238 aa24.17■■□□□ 1.46
SHKBP1-221ENST00000599833 POLR2AP24928 1970 aaKnown RBP24.16■■□□□ 1.46
SHKBP1-221ENST00000599833 A0A1B0GUL7 405 aa24.16■■□□□ 1.46
SHKBP1-221ENST00000599833 G3BP1Q13283 466 aaKnown RBP eCLIP24.16■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms