RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 RIMBP2O15034 1052 aa20.44■□□□□ 0.86
SHKBP1-219ENST00000599575 ATP2B3Q16720 1220 aa20.44■□□□□ 0.86
SHKBP1-219ENST00000599575 KIF1BPQ96EK5 621 aa20.44■□□□□ 0.86
SHKBP1-219ENST00000599575 CHD4Q14839 1912 aa20.44■□□□□ 0.86
SHKBP1-219ENST00000599575 SBF1O95248 1867 aa20.43■□□□□ 0.86
SHKBP1-219ENST00000599575 SASH1O94885 1247 aa20.43■□□□□ 0.86
SHKBP1-219ENST00000599575 TFCP2Q12800 502 aa20.43■□□□□ 0.86
SHKBP1-219ENST00000599575 TNIP1Q15025 636 aa20.43■□□□□ 0.86
SHKBP1-219ENST00000599575 DCTPP1Q9H773 170 aa20.43■□□□□ 0.86
SHKBP1-219ENST00000599575 ECE2O60344 883 aa20.42■□□□□ 0.86
SHKBP1-219ENST00000599575 HIBADHP31937 336 aaKnown RBP20.42■□□□□ 0.86
SHKBP1-219ENST00000599575 GPC2Q8N158 579 aa20.42■□□□□ 0.86
SHKBP1-219ENST00000599575 RWDD1Q9H446 243 aaPredicted RBP20.42■□□□□ 0.86
SHKBP1-219ENST00000599575 KDM2BQ8NHM5 1336 aa20.42■□□□□ 0.86
SHKBP1-219ENST00000599575 GLTPD2A6NH11 291 aa20.41■□□□□ 0.86
SHKBP1-219ENST00000599575 WTIPA6NIX2 430 aaPredicted RBP20.41■□□□□ 0.86
SHKBP1-219ENST00000599575 NEFLP07196 543 aa20.41■□□□□ 0.86
SHKBP1-219ENST00000599575 IL1R1P14778 569 aa20.41■□□□□ 0.86
SHKBP1-219ENST00000599575 FBXO33Q7Z6M2 555 aa20.41■□□□□ 0.86
SHKBP1-219ENST00000599575 VPS37DQ86XT2 251 aa20.41■□□□□ 0.86
SHKBP1-219ENST00000599575 FAM84BQ96KN1 310 aaPredicted RBP20.41■□□□□ 0.86
SHKBP1-219ENST00000599575 EXOC6BQ9Y2D4 811 aa20.41■□□□□ 0.86
SHKBP1-219ENST00000599575 DICER1Q9UPY3 1922 aaKnown RBP20.41■□□□□ 0.86
SHKBP1-219ENST00000599575 A0A1B0GUL7 405 aa20.4■□□□□ 0.86
SHKBP1-219ENST00000599575 YY1P25490 414 aa20.4■□□□□ 0.86
SHKBP1-219ENST00000599575 TXNRD3Q86VQ6 643 aa20.4■□□□□ 0.86
SHKBP1-219ENST00000599575 RHPN1Q8TCX5 695 aa20.4■□□□□ 0.86
SHKBP1-219ENST00000599575 GCC1Q96CN9 775 aa20.4■□□□□ 0.86
SHKBP1-219ENST00000599575 GPR101Q96P66 508 aaPredicted RBP20.4■□□□□ 0.86
SHKBP1-219ENST00000599575 DBNDD1Q9H9R9 158 aa20.4■□□□□ 0.86
SHKBP1-219ENST00000599575 CD209Q9NNX6 404 aa20.4■□□□□ 0.86
SHKBP1-219ENST00000599575 GNL3LQ9NVN8 582 aaKnown RBP20.4■□□□□ 0.86
SHKBP1-219ENST00000599575 SNAP23O00161 211 aa20.39■□□□□ 0.85
SHKBP1-219ENST00000599575 MMP14P50281 582 aa20.39■□□□□ 0.85
SHKBP1-219ENST00000599575 DOK7Q18PE1 504 aa20.39■□□□□ 0.85
SHKBP1-219ENST00000599575 TNNI3KQ59H18 835 aa20.39■□□□□ 0.85
SHKBP1-219ENST00000599575 CIAPIN1Q6FI81 312 aa20.39■□□□□ 0.85
SHKBP1-219ENST00000599575 CLASRPQ8N2M8 674 aaKnown RBP20.39■□□□□ 0.85
SHKBP1-219ENST00000599575 FPGT-TNNI3KV9GXZ4 949 aa20.39■□□□□ 0.85
SHKBP1-219ENST00000599575 A0A1B0GUL6 1792 aa20.39■□□□□ 0.85
SHKBP1-219ENST00000599575 COL4A5P29400 1685 aa20.38■□□□□ 0.85
SHKBP1-219ENST00000599575 SEMA3EO15041 775 aa20.38■□□□□ 0.85
SHKBP1-219ENST00000599575 KLRK1P26718 216 aa20.38■□□□□ 0.85
SHKBP1-219ENST00000599575 CXCL9Q07325 125 aa20.38■□□□□ 0.85
SHKBP1-219ENST00000599575 STRIP1Q5VSL9 837 aa20.38■□□□□ 0.85
SHKBP1-219ENST00000599575 TDRD7Q8NHU6 1098 aaKnown RBP20.38■□□□□ 0.85
SHKBP1-219ENST00000599575 LRRCC1Q9C099 1032 aa20.38■□□□□ 0.85
SHKBP1-219ENST00000599575 ZNF609O15014 1411 aa20.37■□□□□ 0.85
SHKBP1-219ENST00000599575 MYO3BQ8WXR4 1341 aa20.37■□□□□ 0.85
SHKBP1-219ENST00000599575 USP17L3A6NCW0 530 aa20.37■□□□□ 0.85
SHKBP1-219ENST00000599575 USP17L4A6NCW7 530 aa20.37■□□□□ 0.85
SHKBP1-219ENST00000599575 YDJCA8MPS7 323 aa20.37■□□□□ 0.85
SHKBP1-219ENST00000599575 RPS12P25398 132 aaKnown RBP20.37■□□□□ 0.85
SHKBP1-219ENST00000599575 ERICH6BQ5W0A0 696 aa20.37■□□□□ 0.85
SHKBP1-219ENST00000599575 USP17L1Q7RTZ2 530 aa20.37■□□□□ 0.85
SHKBP1-219ENST00000599575 L3MBTL3Q96JM7 780 aaPredicted RBP20.37■□□□□ 0.85
SHKBP1-219ENST00000599575 TIAM2Q8IVF5 1701 aa20.36■□□□□ 0.85
SHKBP1-219ENST00000599575 VIL1P09327 827 aaKnown RBP20.36■□□□□ 0.85
SHKBP1-219ENST00000599575 GYG1P46976 350 aa20.36■□□□□ 0.85
SHKBP1-219ENST00000599575 TIMM10P62072 90 aa20.36■□□□□ 0.85
SHKBP1-219ENST00000599575 FKBP1AP62942 108 aaKnown RBP20.36■□□□□ 0.85
SHKBP1-219ENST00000599575 IRX6P78412 446 aaPredicted RBP20.36■□□□□ 0.85
SHKBP1-219ENST00000599575 XAGE2Q96GT9 111 aa20.36■□□□□ 0.85
SHKBP1-219ENST00000599575 NEUROD6Q96NK8 337 aa20.36■□□□□ 0.85
SHKBP1-219ENST00000599575 FAM205AQ6ZU69 1335 aa20.35■□□□□ 0.85
SHKBP1-219ENST00000599575 GORABQ5T7V8 394 aa20.35■□□□□ 0.85
SHKBP1-219ENST00000599575 DPF2Q92785 391 aa20.35■□□□□ 0.85
SHKBP1-219ENST00000599575 ZNF512BQ96KM6 892 aaPredicted RBP20.35■□□□□ 0.85
SHKBP1-219ENST00000599575 PDS5AQ29RF7 1337 aaKnown RBP20.34■□□□□ 0.85
SHKBP1-219ENST00000599575 ZNF541Q9H0D2 1346 aa20.34■□□□□ 0.85
SHKBP1-219ENST00000599575 IQCA1LA6NCM1 817 aa20.34■□□□□ 0.85
SHKBP1-219ENST00000599575 RAD17O75943 681 aa20.34■□□□□ 0.85
SHKBP1-219ENST00000599575 BCAMP50895 628 aa20.34■□□□□ 0.85
SHKBP1-219ENST00000599575 CCDC158Q5M9N0 1113 aa20.34■□□□□ 0.85
SHKBP1-219ENST00000599575 CCDC102BQ68D86 513 aa20.34■□□□□ 0.85
SHKBP1-219ENST00000599575 TTLL5Q6EMB2 1281 aa20.34■□□□□ 0.85
SHKBP1-219ENST00000599575 AGBL3Q8NEM8 1001 aa20.34■□□□□ 0.85
SHKBP1-219ENST00000599575 TBC1D22AQ8WUA7 517 aa20.34■□□□□ 0.85
SHKBP1-219ENST00000599575 CCDC88AQ3V6T2 1871 aa20.33■□□□□ 0.85
SHKBP1-219ENST00000599575 FRAT2O75474 233 aaPredicted RBP20.33■□□□□ 0.85
SHKBP1-219ENST00000599575 UQCRFS1P1P0C7P4 283 aa20.33■□□□□ 0.85
SHKBP1-219ENST00000599575 EAF2Q96CJ1 260 aaPredicted RBP20.33■□□□□ 0.85
SHKBP1-219ENST00000599575 ZBTB47Q9UFB7 747 aaPredicted RBP20.33■□□□□ 0.85
SHKBP1-219ENST00000599575 PSMD14O00487 310 aa20.32■□□□□ 0.84
SHKBP1-219ENST00000599575 IGSF3O75054 1194 aa20.32■□□□□ 0.84
SHKBP1-219ENST00000599575 DDNO94850 711 aaPredicted RBP20.32■□□□□ 0.84
SHKBP1-219ENST00000599575 DACT2Q5SW24 774 aa20.32■□□□□ 0.84
SHKBP1-219ENST00000599575 RSBN1LQ6PCB5 846 aaPredicted RBP20.32■□□□□ 0.84
SHKBP1-219ENST00000599575 SMC5Q8IY18 1101 aa20.32■□□□□ 0.84
SHKBP1-219ENST00000599575 DENND2AQ9ULE3 1009 aa20.32■□□□□ 0.84
SHKBP1-219ENST00000599575 GJA3Q9Y6H8 435 aa20.32■□□□□ 0.84
SHKBP1-219ENST00000599575 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.32■□□□□ 0.84
SHKBP1-219ENST00000599575 IFIT2P09913 472 aaKnown RBP20.31■□□□□ 0.84
SHKBP1-219ENST00000599575 VEGFAP15692 232 aaPredicted RBP20.31■□□□□ 0.84
SHKBP1-219ENST00000599575 AACSQ86V21 672 aa20.31■□□□□ 0.84
SHKBP1-219ENST00000599575 WDR66Q8TBY9 1149 aa20.31■□□□□ 0.84
SHKBP1-219ENST00000599575 GPBP1L1Q9HC44 474 aaPredicted RBP20.31■□□□□ 0.84
SHKBP1-219ENST00000599575 SUGT1Q9Y2Z0 365 aa20.31■□□□□ 0.84
SHKBP1-219ENST00000599575 ARID4AP29374 1257 aaPredicted RBP20.3■□□□□ 0.84
SHKBP1-219ENST00000599575 LMOD1P29536 600 aaPredicted RBP20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms