RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 GDPD2Q9HCC8 539 aa17.26■□□□□ 0.35
VRK3-217ENST00000599538 WDR33Q9C0J8 1336 aaKnown RBP17.26■□□□□ 0.35
VRK3-217ENST00000599538 NCLP19338 710 aaKnown RBP17.26■□□□□ 0.35
VRK3-217ENST00000599538 PANK2Q9BZ23 570 aa17.26■□□□□ 0.35
VRK3-217ENST00000599538 PUS7LQ9H0K6 701 aaKnown RBP17.26■□□□□ 0.35
VRK3-217ENST00000599538 MYO5AQ9Y4I1 1855 aaKnown RBP17.25■□□□□ 0.35
VRK3-217ENST00000599538 LRP5O75197 1615 aa17.25■□□□□ 0.35
VRK3-217ENST00000599538 STX6O43752 255 aa17.25■□□□□ 0.35
VRK3-217ENST00000599538 STK3Q13188 491 aa17.25■□□□□ 0.35
VRK3-217ENST00000599538 WASHC4Q2M389 1173 aa17.25■□□□□ 0.35
VRK3-217ENST00000599538 PARP10Q53GL7 1025 aa17.25■□□□□ 0.35
VRK3-217ENST00000599538 FGFR2P21802 821 aa17.24■□□□□ 0.35
VRK3-217ENST00000599538 KRT32Q14532 448 aa17.24■□□□□ 0.35
VRK3-217ENST00000599538 CCDC102BQ68D86 513 aa17.24■□□□□ 0.35
VRK3-217ENST00000599538 CAVIN1Q6NZI2 390 aaKnown RBP17.24■□□□□ 0.35
VRK3-217ENST00000599538 ALDH8A1Q9H2A2 487 aaPredicted RBP17.24■□□□□ 0.35
VRK3-217ENST00000599538 RBM27Q9P2N5 1060 aaKnown RBP17.24■□□□□ 0.35
VRK3-217ENST00000599538 LAMA4Q16363 1823 aa17.24■□□□□ 0.35
VRK3-217ENST00000599538 C3orf67Q6ZVT6 689 aa17.24■□□□□ 0.35
VRK3-217ENST00000599538 AK7Q96M32 723 aa17.24■□□□□ 0.35
VRK3-217ENST00000599538 ZSCAN22P10073 491 aaPredicted RBP17.23■□□□□ 0.35
VRK3-217ENST00000599538 L1TD1Q5T7N2 865 aaKnown RBP17.23■□□□□ 0.35
VRK3-217ENST00000599538 Q6ZUG5 572 aa17.23■□□□□ 0.35
VRK3-217ENST00000599538 PIH1D3Q9NQM4 214 aaKnown RBP17.23■□□□□ 0.35
VRK3-217ENST00000599538 AMIGO3Q86WK7 504 aa17.23■□□□□ 0.35
VRK3-217ENST00000599538 TICAM2Q86XR7 235 aa17.23■□□□□ 0.35
VRK3-217ENST00000599538 ABCC12Q96J65 1359 aa17.23■□□□□ 0.35
VRK3-217ENST00000599538 BCORQ6W2J9 1755 aa17.22■□□□□ 0.35
VRK3-217ENST00000599538 ANKRD1Q15327 319 aa17.22■□□□□ 0.35
VRK3-217ENST00000599538 PUM3Q15397 648 aaKnown RBP17.22■□□□□ 0.35
VRK3-217ENST00000599538 ERFEQ4G0M1 354 aa17.22■□□□□ 0.35
VRK3-217ENST00000599538 BICDL1Q6ZP65 573 aa17.22■□□□□ 0.35
VRK3-217ENST00000599538 MPHOSPH8Q99549 860 aa17.22■□□□□ 0.35
VRK3-217ENST00000599538 MTMR6Q9Y217 621 aa17.22■□□□□ 0.35
VRK3-217ENST00000599538 MROH5Q6ZUA9 1318 aa17.22■□□□□ 0.35
VRK3-217ENST00000599538 LPIN2Q92539 896 aa17.21■□□□□ 0.35
VRK3-217ENST00000599538 APPBP2Q92624 585 aa17.21■□□□□ 0.35
VRK3-217ENST00000599538 ZNF512BQ96KM6 892 aaPredicted RBP17.21■□□□□ 0.35
VRK3-217ENST00000599538 BCL2L12Q9HB09 334 aa17.21■□□□□ 0.35
VRK3-217ENST00000599538 MYH7P12883 1935 aa17.21■□□□□ 0.35
VRK3-217ENST00000599538 TAF1P21675 1872 aa17.21■□□□□ 0.35
VRK3-217ENST00000599538 E7EWF7 191 aa17.21■□□□□ 0.35
VRK3-217ENST00000599538 GADD45BO75293 160 aaPredicted RBP17.21■□□□□ 0.35
VRK3-217ENST00000599538 ARID4AP29374 1257 aaPredicted RBP17.21■□□□□ 0.35
VRK3-217ENST00000599538 CCDC152Q4G0S7 254 aa17.21■□□□□ 0.35
VRK3-217ENST00000599538 BRF1Q92994 677 aa17.21■□□□□ 0.35
VRK3-217ENST00000599538 SRP68Q9UHB9 627 aaKnown RBP17.21■□□□□ 0.35
VRK3-217ENST00000599538 BTAF1O14981 1849 aa17.21■□□□□ 0.35
VRK3-217ENST00000599538 WTIPA6NIX2 430 aaPredicted RBP17.2■□□□□ 0.34
VRK3-217ENST00000599538 F13A1P00488 732 aa17.2■□□□□ 0.34
VRK3-217ENST00000599538 ZFYP08048 801 aaPredicted RBP17.2■□□□□ 0.34
VRK3-217ENST00000599538 HAND2P61296 217 aa17.2■□□□□ 0.34
VRK3-217ENST00000599538 TBC1D9BQ66K14 1250 aa17.2■□□□□ 0.34
VRK3-217ENST00000599538 CHST3Q7LGC8 479 aa17.2■□□□□ 0.34
VRK3-217ENST00000599538 GRPEL1Q9HAV7 217 aa17.2■□□□□ 0.34
VRK3-217ENST00000599538 TMEM63CQ9P1W3 806 aa17.2■□□□□ 0.34
VRK3-217ENST00000599538 ZNF652Q9Y2D9 606 aa17.2■□□□□ 0.34
VRK3-217ENST00000599538 ZNF831Q5JPB2 1677 aa17.2■□□□□ 0.34
VRK3-217ENST00000599538 ADD2P35612 726 aa17.2■□□□□ 0.34
VRK3-217ENST00000599538 SLC9C2Q5TAH2 1124 aa17.2■□□□□ 0.34
VRK3-217ENST00000599538 CLEC4GQ6UXB4 293 aa17.2■□□□□ 0.34
VRK3-217ENST00000599538 USP48Q86UV5 1035 aa17.2■□□□□ 0.34
VRK3-217ENST00000599538 CNPY2Q9Y2B0 182 aa17.2■□□□□ 0.34
VRK3-217ENST00000599538 EP400Q96L91 3159 aa17.19■□□□□ 0.34
VRK3-217ENST00000599538 SPATA31A6Q5VVP1 1343 aa17.19■□□□□ 0.34
VRK3-217ENST00000599538 CNTNAP4Q9C0A0 1308 aa17.19■□□□□ 0.34
VRK3-217ENST00000599538 THSD7AQ9UPZ6 1657 aa17.19■□□□□ 0.34
VRK3-217ENST00000599538 GPAA1O43292 621 aa17.19■□□□□ 0.34
VRK3-217ENST00000599538 IDH1O75874 414 aaKnown RBP17.19■□□□□ 0.34
VRK3-217ENST00000599538 FGAP02671 866 aa17.19■□□□□ 0.34
VRK3-217ENST00000599538 ZSCAN23Q3MJ62 389 aa17.19■□□□□ 0.34
VRK3-217ENST00000599538 DHX32Q7L7V1 743 aaKnown RBP17.19■□□□□ 0.34
VRK3-217ENST00000599538 WWC3Q9ULE0 1092 aa17.19■□□□□ 0.34
VRK3-217ENST00000599538 VPS37CA5D8V6 355 aaPredicted RBP17.18■□□□□ 0.34
VRK3-217ENST00000599538 JAK2O60674 1132 aa17.18■□□□□ 0.34
VRK3-217ENST00000599538 EXOSC10Q01780 885 aaKnown RBP17.18■□□□□ 0.34
VRK3-217ENST00000599538 RASGRF1Q13972 1273 aa17.18■□□□□ 0.34
VRK3-217ENST00000599538 LAMB2P55268 1798 aa17.18■□□□□ 0.34
VRK3-217ENST00000599538 MRE11P49959 708 aa17.18■□□□□ 0.34
VRK3-217ENST00000599538 BCAMP50895 628 aa17.18■□□□□ 0.34
VRK3-217ENST00000599538 LRRFIP1Q32MZ4 808 aaKnown RBP17.18■□□□□ 0.34
VRK3-217ENST00000599538 ARAP2Q8WZ64 1704 aa17.18■□□□□ 0.34
VRK3-217ENST00000599538 SLC5A1P13866 664 aa17.17■□□□□ 0.34
VRK3-217ENST00000599538 IGHMBP2P38935 993 aaKnown RBP17.17■□□□□ 0.34
VRK3-217ENST00000599538 CHRNDQ07001 517 aa17.17■□□□□ 0.34
VRK3-217ENST00000599538 LARP1BQ659C4 914 aaKnown RBP17.17■□□□□ 0.34
VRK3-217ENST00000599538 CDC37L1Q7L3B6 337 aa17.17■□□□□ 0.34
VRK3-217ENST00000599538 CCDC24Q8N4L8 307 aa17.17■□□□□ 0.34
VRK3-217ENST00000599538 GTF3C6Q969F1 213 aa17.17■□□□□ 0.34
VRK3-217ENST00000599538 GJD4Q96KN9 370 aaPredicted RBP17.17■□□□□ 0.34
VRK3-217ENST00000599538 RTL9Q8NET4 1388 aa17.17■□□□□ 0.34
VRK3-217ENST00000599538 GNPATO15228 680 aa17.17■□□□□ 0.34
VRK3-217ENST00000599538 HSP90B1P14625 803 aaKnown RBP17.17■□□□□ 0.34
VRK3-217ENST00000599538 APOBRQ0VD83 1088 aa17.17■□□□□ 0.34
VRK3-217ENST00000599538 GPHNQ9NQX3 736 aaPredicted RBP17.17■□□□□ 0.34
VRK3-217ENST00000599538 ZNF532Q9HCE3 1301 aa17.16■□□□□ 0.34
VRK3-217ENST00000599538 UQCRFS1P1P0C7P4 283 aa17.16■□□□□ 0.34
VRK3-217ENST00000599538 PDE6AP16499 860 aa17.16■□□□□ 0.34
VRK3-217ENST00000599538 HSPA1LP34931 641 aa17.16■□□□□ 0.34
VRK3-217ENST00000599538 SCRN1Q12765 414 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms