RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 ZC3H15Q8WU90 426 aaKnown RBP17.73■□□□□ 0.43
LIG1-218ENST00000599322 VIL1P09327 827 aaKnown RBP17.72■□□□□ 0.43
LIG1-218ENST00000599322 AGBL3Q8NEM8 1001 aa17.72■□□□□ 0.43
LIG1-218ENST00000599322 FRAT1Q92837 279 aaPredicted RBP17.72■□□□□ 0.43
LIG1-218ENST00000599322 BICC1Q9H694 974 aaKnown RBP17.72■□□□□ 0.43
LIG1-218ENST00000599322 POLR2AP24928 1970 aaKnown RBP17.71■□□□□ 0.43
LIG1-218ENST00000599322 DEFB115Q30KQ5 88 aa17.71■□□□□ 0.43
LIG1-218ENST00000599322 RBM26Q5T8P6 1007 aaKnown RBP17.71■□□□□ 0.43
LIG1-218ENST00000599322 RSBN1LQ6PCB5 846 aaPredicted RBP17.71■□□□□ 0.43
LIG1-218ENST00000599322 ZNF804AQ7Z570 1209 aa17.71■□□□□ 0.43
LIG1-218ENST00000599322 OGFOD1Q8N543 542 aa17.71■□□□□ 0.43
LIG1-218ENST00000599322 ZNF594Q96JF6 807 aaPredicted RBP17.71■□□□□ 0.43
LIG1-218ENST00000599322 USP44Q9H0E7 712 aa17.71■□□□□ 0.43
LIG1-218ENST00000599322 MYO3BQ8WXR4 1341 aa17.71■□□□□ 0.42
LIG1-218ENST00000599322 TAF5LO75529 589 aa17.7■□□□□ 0.42
LIG1-218ENST00000599322 HELBQ8NG08 1087 aaPredicted RBP17.7■□□□□ 0.42
LIG1-218ENST00000599322 WBP1LQ9NX94 342 aa17.7■□□□□ 0.42
LIG1-218ENST00000599322 ZBED9Q6R2W3 1325 aa17.7■□□□□ 0.42
LIG1-218ENST00000599322 MROH5Q6ZUA9 1318 aa17.7■□□□□ 0.42
LIG1-218ENST00000599322 USP17L8P0C7I0 530 aa17.69■□□□□ 0.42
LIG1-218ENST00000599322 MMP14P50281 582 aa17.69■□□□□ 0.42
LIG1-218ENST00000599322 RABL6Q3YEC7 729 aaPredicted RBP17.69■□□□□ 0.42
LIG1-218ENST00000599322 CDC37L1Q7L3B6 337 aa17.69■□□□□ 0.42
LIG1-218ENST00000599322 DCPSQ96C86 337 aaKnown RBP17.69■□□□□ 0.42
LIG1-218ENST00000599322 PRDM10Q9NQV6 1147 aa17.69■□□□□ 0.42
LIG1-218ENST00000599322 KCNQ5Q9NR82 932 aa17.69■□□□□ 0.42
LIG1-218ENST00000599322 GNAI3P08754 354 aa17.68■□□□□ 0.42
LIG1-218ENST00000599322 TBC1D10BQ4KMP7 808 aaPredicted RBP17.68■□□□□ 0.42
LIG1-218ENST00000599322 STRIP1Q5VSL9 837 aa17.68■□□□□ 0.42
LIG1-218ENST00000599322 TTLL5Q6EMB2 1281 aa17.68■□□□□ 0.42
LIG1-218ENST00000599322 HDAC9Q9UKV0 1011 aa17.68■□□□□ 0.42
LIG1-218ENST00000599322 ABT1Q9ULW3 272 aaKnown RBP17.68■□□□□ 0.42
LIG1-218ENST00000599322 WDR33Q9C0J8 1336 aaKnown RBP17.68■□□□□ 0.42
LIG1-218ENST00000599322 SPEF2Q9C093 1822 aa17.68■□□□□ 0.42
LIG1-218ENST00000599322 TRAF5O00463 557 aa17.67■□□□□ 0.42
LIG1-218ENST00000599322 CTCFP49711 727 aaPredicted RBP17.67■□□□□ 0.42
LIG1-218ENST00000599322 UBE4AQ14139 1066 aa17.67■□□□□ 0.42
LIG1-218ENST00000599322 KIF4BQ2VIQ3 1234 aa17.67■□□□□ 0.42
LIG1-218ENST00000599322 METTL24Q5JXM2 366 aa17.67■□□□□ 0.42
LIG1-218ENST00000599322 CST9Q5W186 159 aa17.67■□□□□ 0.42
LIG1-218ENST00000599322 ZKSCAN2Q63HK3 967 aa17.67■□□□□ 0.42
LIG1-218ENST00000599322 ATF7IPQ6VMQ6 1270 aa17.67■□□□□ 0.42
LIG1-218ENST00000599322 C15orf52Q6ZUT6 534 aaKnown RBP17.67■□□□□ 0.42
LIG1-218ENST00000599322 SAMD7Q7Z3H4 446 aa17.67■□□□□ 0.42
LIG1-218ENST00000599322 VPS37DQ86XT2 251 aa17.67■□□□□ 0.42
LIG1-218ENST00000599322 KAZALD1Q96I82 304 aa17.67■□□□□ 0.42
LIG1-218ENST00000599322 TRPM4Q8TD43 1214 aa17.66■□□□□ 0.42
LIG1-218ENST00000599322 AIDAQ96BJ3 306 aa17.66■□□□□ 0.42
LIG1-218ENST00000599322 CD209Q9NNX6 404 aa17.66■□□□□ 0.42
LIG1-218ENST00000599322 PGAP2Q9UHJ9 254 aa17.66■□□□□ 0.42
LIG1-218ENST00000599322 SCN9AQ15858 1988 aa17.66■□□□□ 0.42
LIG1-218ENST00000599322 WTIPA6NIX2 430 aaPredicted RBP17.65■□□□□ 0.42
LIG1-218ENST00000599322 LBX1P52954 281 aa17.65■□□□□ 0.42
LIG1-218ENST00000599322 GTF2IP78347 998 aa17.65■□□□□ 0.42
LIG1-218ENST00000599322 CAVIN4Q5BKX8 364 aa17.65■□□□□ 0.42
LIG1-218ENST00000599322 INTS3Q68E01 1043 aaKnown RBP17.65■□□□□ 0.42
LIG1-218ENST00000599322 SULF1Q8IWU6 871 aa17.65■□□□□ 0.42
LIG1-218ENST00000599322 ANKRD44Q8N8A2 993 aa17.65■□□□□ 0.42
LIG1-218ENST00000599322 PSME4Q14997 1843 aa17.64■□□□□ 0.41
LIG1-218ENST00000599322 FRAT2O75474 233 aaPredicted RBP17.64■□□□□ 0.41
LIG1-218ENST00000599322 BCAR3O75815 825 aa17.64■□□□□ 0.41
LIG1-218ENST00000599322 HSPA8P11142 646 aaKnown RBP17.64■□□□□ 0.41
LIG1-218ENST00000599322 ZNF280AP59817 542 aaPredicted RBP17.64■□□□□ 0.41
LIG1-218ENST00000599322 TXNRD3Q86VQ6 643 aa17.64■□□□□ 0.41
LIG1-218ENST00000599322 FTSJ3Q8IY81 847 aaKnown RBP17.64■□□□□ 0.41
LIG1-218ENST00000599322 HIBADHP31937 336 aaKnown RBP17.63■□□□□ 0.41
LIG1-218ENST00000599322 HIRAP54198 1017 aaPredicted RBP17.63■□□□□ 0.41
LIG1-218ENST00000599322 DACT2Q5SW24 774 aa17.63■□□□□ 0.41
LIG1-218ENST00000599322 CYP4F22Q6NT55 531 aa17.63■□□□□ 0.41
LIG1-218ENST00000599322 PAXIP1Q6ZW49 1069 aaPredicted RBP17.63■□□□□ 0.41
LIG1-218ENST00000599322 KRT26Q7Z3Y9 468 aa17.63■□□□□ 0.41
LIG1-218ENST00000599322 CAPNS2Q96L46 248 aa17.63■□□□□ 0.41
LIG1-218ENST00000599322 GLIS2Q9BZE0 524 aaPredicted RBP17.63■□□□□ 0.41
LIG1-218ENST00000599322 PUS3Q9BZE2 481 aaKnown RBP17.63■□□□□ 0.41
LIG1-218ENST00000599322 ZNF408Q9H9D4 720 aa17.63■□□□□ 0.41
LIG1-218ENST00000599322 MYOZ2Q9NPC6 264 aa17.63■□□□□ 0.41
LIG1-218ENST00000599322 FBXO3Q9UK99 471 aa17.63■□□□□ 0.41
LIG1-218ENST00000599322 RIPOR2Q9Y4F9 1068 aa17.63■□□□□ 0.41
LIG1-218ENST00000599322 TLL2Q9Y6L7 1015 aa17.63■□□□□ 0.41
LIG1-218ENST00000599322 SHTN1A0MZ66 631 aa17.62■□□□□ 0.41
LIG1-218ENST00000599322 IFIT1P09914 478 aaKnown RBP17.62■□□□□ 0.41
LIG1-218ENST00000599322 KLRK1P26718 216 aa17.62■□□□□ 0.41
LIG1-218ENST00000599322 USP48Q86UV5 1035 aa17.62■□□□□ 0.41
LIG1-218ENST00000599322 CLUAP1Q96AJ1 413 aa17.62■□□□□ 0.41
LIG1-218ENST00000599322 LRRFIP2Q9Y608 721 aaKnown RBP17.62■□□□□ 0.41
LIG1-218ENST00000599322 ZNF609O15014 1411 aa17.62■□□□□ 0.41
LIG1-218ENST00000599322 SNAP23O00161 211 aa17.61■□□□□ 0.41
LIG1-218ENST00000599322 EYA2O00167 538 aa17.61■□□□□ 0.41
LIG1-218ENST00000599322 PDE8BO95263 885 aa17.61■□□□□ 0.41
LIG1-218ENST00000599322 CELF2O95319 508 aaKnown RBP17.61■□□□□ 0.41
LIG1-218ENST00000599322 MS4A1P11836 297 aa17.61■□□□□ 0.41
LIG1-218ENST00000599322 TRIM27P14373 513 aa17.61■□□□□ 0.41
LIG1-218ENST00000599322 IL1R1P14778 569 aa17.61■□□□□ 0.41
LIG1-218ENST00000599322 ECE1P42892 770 aa17.61■□□□□ 0.41
LIG1-218ENST00000599322 MAP2K1Q02750 393 aaPredicted RBP17.61■□□□□ 0.41
LIG1-218ENST00000599322 SCARF1Q14162 830 aa17.61■□□□□ 0.41
LIG1-218ENST00000599322 GMLQ99445 158 aa17.61■□□□□ 0.41
LIG1-218ENST00000599322 GNAI2P04899 355 aa17.6■□□□□ 0.41
LIG1-218ENST00000599322 PUM3Q15397 648 aaKnown RBP17.6■□□□□ 0.41
LIG1-218ENST00000599322 LRRC24Q50LG9 513 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms