RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 UBE4AQ14139 1066 aa17.7■□□□□ 0.42
SHKBP1-217ENST00000598558 CIAPIN1Q6FI81 312 aa17.7■□□□□ 0.42
SHKBP1-217ENST00000598558 GPC2Q8N158 579 aa17.7■□□□□ 0.42
SHKBP1-217ENST00000598558 L3MBTL3Q96JM7 780 aaPredicted RBP17.7■□□□□ 0.42
SHKBP1-217ENST00000598558 ZBTB12Q9Y330 459 aaPredicted RBP17.7■□□□□ 0.42
SHKBP1-217ENST00000598558 SHTN1A0MZ66 631 aa17.69■□□□□ 0.42
SHKBP1-217ENST00000598558 SCNN1DP51172 638 aa17.69■□□□□ 0.42
SHKBP1-217ENST00000598558 FAM84BQ96KN1 310 aaPredicted RBP17.69■□□□□ 0.42
SHKBP1-217ENST00000598558 FBXO3Q9UK99 471 aa17.69■□□□□ 0.42
SHKBP1-217ENST00000598558 IL15P40933 162 aaPredicted RBP17.68■□□□□ 0.42
SHKBP1-217ENST00000598558 GYG1P46976 350 aa17.68■□□□□ 0.42
SHKBP1-217ENST00000598558 CRBNQ96SW2 442 aa17.68■□□□□ 0.42
SHKBP1-217ENST00000598558 MXD3Q9BW11 206 aa17.68■□□□□ 0.42
SHKBP1-217ENST00000598558 COA1Q9GZY4 146 aa17.68■□□□□ 0.42
SHKBP1-217ENST00000598558 CD209Q9NNX6 404 aa17.68■□□□□ 0.42
SHKBP1-217ENST00000598558 SUPT16HQ9Y5B9 1047 aaKnown RBP17.68■□□□□ 0.42
SHKBP1-217ENST00000598558 G3V3G9 751 aa17.67■□□□□ 0.42
SHKBP1-217ENST00000598558 SASH1O94885 1247 aa17.67■□□□□ 0.42
SHKBP1-217ENST00000598558 VIL1P09327 827 aaKnown RBP17.67■□□□□ 0.42
SHKBP1-217ENST00000598558 POTEIP0CG38 1075 aa17.67■□□□□ 0.42
SHKBP1-217ENST00000598558 POTEJP0CG39 1038 aa17.67■□□□□ 0.42
SHKBP1-217ENST00000598558 VEGFAP15692 232 aaPredicted RBP17.67■□□□□ 0.42
SHKBP1-217ENST00000598558 EPS15P42566 896 aa17.67■□□□□ 0.42
SHKBP1-217ENST00000598558 GMPSP49915 693 aaPredicted RBP17.67■□□□□ 0.42
SHKBP1-217ENST00000598558 TFCP2Q12800 502 aa17.67■□□□□ 0.42
SHKBP1-217ENST00000598558 DCAF8Q5TAQ9 597 aa17.67■□□□□ 0.42
SHKBP1-217ENST00000598558 PODNQ7Z5L7 613 aa17.67■□□□□ 0.42
SHKBP1-217ENST00000598558 CEP126Q9P2H0 1117 aa17.67■□□□□ 0.42
SHKBP1-217ENST00000598558 TNIP1Q15025 636 aa17.66■□□□□ 0.42
SHKBP1-217ENST00000598558 FBXO33Q7Z6M2 555 aa17.66■□□□□ 0.42
SHKBP1-217ENST00000598558 WDR90Q96KV7 1748 aa17.65■□□□□ 0.42
SHKBP1-217ENST00000598558 IL1R1P14778 569 aa17.65■□□□□ 0.42
SHKBP1-217ENST00000598558 BCAMP50895 628 aa17.65■□□□□ 0.42
SHKBP1-217ENST00000598558 TAF1DQ9H5J8 278 aaPredicted RBP17.65■□□□□ 0.42
SHKBP1-217ENST00000598558 NOP58Q9Y2X3 529 aaKnown RBP17.65■□□□□ 0.42
SHKBP1-217ENST00000598558 A0A1B0GUL6 1792 aa17.65■□□□□ 0.42
SHKBP1-217ENST00000598558 USP17L3A6NCW0 530 aa17.64■□□□□ 0.41
SHKBP1-217ENST00000598558 USP17L4A6NCW7 530 aa17.64■□□□□ 0.41
SHKBP1-217ENST00000598558 SURF6O75683 361 aaKnown RBP17.64■□□□□ 0.41
SHKBP1-217ENST00000598558 ADORA1P30542 326 aa17.64■□□□□ 0.41
SHKBP1-217ENST00000598558 TIMM10P62072 90 aa17.64■□□□□ 0.41
SHKBP1-217ENST00000598558 PUM3Q15397 648 aaKnown RBP17.64■□□□□ 0.41
SHKBP1-217ENST00000598558 DACT2Q5SW24 774 aa17.64■□□□□ 0.41
SHKBP1-217ENST00000598558 USP17L1Q7RTZ2 530 aa17.64■□□□□ 0.41
SHKBP1-217ENST00000598558 RPAP2Q8IXW5 612 aaPredicted RBP17.64■□□□□ 0.41
SHKBP1-217ENST00000598558 TDRD7Q8NHU6 1098 aaKnown RBP17.64■□□□□ 0.41
SHKBP1-217ENST00000598558 GMLQ99445 158 aa17.64■□□□□ 0.41
SHKBP1-217ENST00000598558 GPRC5DQ9NZD1 345 aa17.64■□□□□ 0.41
SHKBP1-217ENST00000598558 SCN9AQ15858 1988 aa17.63■□□□□ 0.41
SHKBP1-217ENST00000598558 HIBADHP31937 336 aaKnown RBP17.63■□□□□ 0.41
SHKBP1-217ENST00000598558 GTF2IP78347 998 aa17.63■□□□□ 0.41
SHKBP1-217ENST00000598558 G3BP1Q13283 466 aaKnown RBP eCLIP17.63■□□□□ 0.41
SHKBP1-217ENST00000598558 ATP2B3Q16720 1220 aa17.63■□□□□ 0.41
SHKBP1-217ENST00000598558 RSBN1LQ6PCB5 846 aaPredicted RBP17.63■□□□□ 0.41
SHKBP1-217ENST00000598558 LPIN2Q92539 896 aa17.63■□□□□ 0.41
SHKBP1-217ENST00000598558 HACL1Q9UJ83 578 aa17.63■□□□□ 0.41
SHKBP1-217ENST00000598558 IQSEC3Q9UPP2 1182 aaPredicted RBP17.63■□□□□ 0.41
SHKBP1-217ENST00000598558 JAG2Q9Y219 1238 aa17.63■□□□□ 0.41
SHKBP1-217ENST00000598558 PCDHB15Q9Y5E8 787 aa17.63■□□□□ 0.41
SHKBP1-217ENST00000598558 EGFRP00533 1210 aa17.62■□□□□ 0.41
SHKBP1-217ENST00000598558 EPHX2P34913 555 aa17.62■□□□□ 0.41
SHKBP1-217ENST00000598558 TTLL5Q6EMB2 1281 aa17.62■□□□□ 0.41
SHKBP1-217ENST00000598558 ZNF804AQ7Z570 1209 aa17.62■□□□□ 0.41
SHKBP1-217ENST00000598558 CERS5Q8N5B7 392 aa17.62■□□□□ 0.41
SHKBP1-217ENST00000598558 CNOT7Q9UIV1 285 aaKnown RBP17.62■□□□□ 0.41
SHKBP1-217ENST00000598558 EXOC6BQ9Y2D4 811 aa17.62■□□□□ 0.41
SHKBP1-217ENST00000598558 IFIT1P09914 478 aaKnown RBP17.61■□□□□ 0.41
SHKBP1-217ENST00000598558 HIRAP54198 1017 aaPredicted RBP17.61■□□□□ 0.41
SHKBP1-217ENST00000598558 STRIP1Q5VSL9 837 aa17.61■□□□□ 0.41
SHKBP1-217ENST00000598558 DPF2Q92785 391 aa17.61■□□□□ 0.41
SHKBP1-217ENST00000598558 FBXW7Q969H0 707 aa17.61■□□□□ 0.41
SHKBP1-217ENST00000598558 IQCA1LA6NCM1 817 aa17.6■□□□□ 0.41
SHKBP1-217ENST00000598558 TOMM70O94826 608 aa17.6■□□□□ 0.41
SHKBP1-217ENST00000598558 SLC5A1P13866 664 aa17.6■□□□□ 0.41
SHKBP1-217ENST00000598558 MICALL2Q8IY33 904 aa17.6■□□□□ 0.41
SHKBP1-217ENST00000598558 TRPM4Q8TD43 1214 aa17.6■□□□□ 0.41
SHKBP1-217ENST00000598558 CHMP4BQ9H444 224 aaKnown RBP17.6■□□□□ 0.41
SHKBP1-217ENST00000598558 A0A1B0GUL7 405 aa17.59■□□□□ 0.41
SHKBP1-217ENST00000598558 PHKA1P46020 1223 aa17.59■□□□□ 0.41
SHKBP1-217ENST00000598558 GRIK5Q16478 980 aa17.59■□□□□ 0.41
SHKBP1-217ENST00000598558 SAMD7Q7Z3H4 446 aa17.59■□□□□ 0.41
SHKBP1-217ENST00000598558 EXOC6Q8TAG9 804 aa17.59■□□□□ 0.41
SHKBP1-217ENST00000598558 FAM205AQ6ZU69 1335 aa17.58■□□□□ 0.4
SHKBP1-217ENST00000598558 RPS12P25398 132 aaKnown RBP17.58■□□□□ 0.4
SHKBP1-217ENST00000598558 LMOD1P29536 600 aaPredicted RBP17.58■□□□□ 0.4
SHKBP1-217ENST00000598558 EAPPQ56P03 285 aaPredicted RBP17.58■□□□□ 0.4
SHKBP1-217ENST00000598558 CAVIN4Q5BKX8 364 aa17.58■□□□□ 0.4
SHKBP1-217ENST00000598558 AGBL3Q8NEM8 1001 aa17.58■□□□□ 0.4
SHKBP1-217ENST00000598558 XAGE2Q96GT9 111 aa17.58■□□□□ 0.4
SHKBP1-217ENST00000598558 C1QTNF8P60827 252 aa17.57■□□□□ 0.4
SHKBP1-217ENST00000598558 IRX6P78412 446 aaPredicted RBP17.57■□□□□ 0.4
SHKBP1-217ENST00000598558 OS9Q13438 667 aaPredicted RBP17.57■□□□□ 0.4
SHKBP1-217ENST00000598558 RBM46Q8TBY0 533 aaKnown RBP17.57■□□□□ 0.4
SHKBP1-217ENST00000598558 EAF2Q96CJ1 260 aaPredicted RBP17.57■□□□□ 0.4
SHKBP1-217ENST00000598558 NEUROD6Q96NK8 337 aa17.57■□□□□ 0.4
SHKBP1-217ENST00000598558 ADARB2Q9NS39 739 aaKnown RBP17.57■□□□□ 0.4
SHKBP1-217ENST00000598558 AKAP2Q9Y2D5 859 aa17.57■□□□□ 0.4
SHKBP1-217ENST00000598558 ZNF609O15014 1411 aa17.56■□□□□ 0.4
SHKBP1-217ENST00000598558 ZNF280AP59817 542 aaPredicted RBP17.56■□□□□ 0.4
SHKBP1-217ENST00000598558 CHAF1AQ13111 956 aaPredicted RBP17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms