RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 ANP32CO43423 234 aa16.06■□□□□ 0.16
TRIM28-212ENST00000597995 SLC34A2O95436 690 aa16.06■□□□□ 0.16
TRIM28-212ENST00000597995 STK31Q9BXU1 1019 aa16.06■□□□□ 0.16
TRIM28-212ENST00000597995 GREM2Q9H772 168 aa16.06■□□□□ 0.16
TRIM28-212ENST00000597995 MYO3BQ8WXR4 1341 aa16.05■□□□□ 0.16
TRIM28-212ENST00000597995 H7C1W4 665 aa16.05■□□□□ 0.16
TRIM28-212ENST00000597995 CCT4P50991 539 aaKnown RBP16.05■□□□□ 0.16
TRIM28-212ENST00000597995 DACT2Q5SW24 774 aa16.05■□□□□ 0.16
TRIM28-212ENST00000597995 STRIP1Q5VSL9 837 aa16.05■□□□□ 0.16
TRIM28-212ENST00000597995 RASAL3Q86YV0 1011 aa16.05■□□□□ 0.16
TRIM28-212ENST00000597995 OGFOD1Q8N543 542 aa16.05■□□□□ 0.16
TRIM28-212ENST00000597995 COA1Q9GZY4 146 aa16.05■□□□□ 0.16
TRIM28-212ENST00000597995 MRS2Q9HD23 443 aa16.05■□□□□ 0.16
TRIM28-212ENST00000597995 LEMD3Q9Y2U8 911 aa16.05■□□□□ 0.16
TRIM28-212ENST00000597995 PAPPA2Q9BXP8 1791 aa16.05■□□□□ 0.16
TRIM28-212ENST00000597995 WTIPA6NIX2 430 aaPredicted RBP16.04■□□□□ 0.16
TRIM28-212ENST00000597995 NEURL1BA8MQ27 555 aa16.04■□□□□ 0.16
TRIM28-212ENST00000597995 CCDC27Q2M243 656 aa16.04■□□□□ 0.16
TRIM28-212ENST00000597995 MYH3P11055 1940 aa16.04■□□□□ 0.16
TRIM28-212ENST00000597995 IGHMBP2P38935 993 aaKnown RBP16.03■□□□□ 0.16
TRIM28-212ENST00000597995 CWF19L2Q2TBE0 894 aaKnown RBP16.03■□□□□ 0.16
TRIM28-212ENST00000597995 NBPF9Q3BBW0 867 aa16.03■□□□□ 0.16
TRIM28-212ENST00000597995 CTU1Q7Z7A3 348 aaKnown RBP16.03■□□□□ 0.16
TRIM28-212ENST00000597995 PLA2G12BQ9BX93 195 aa16.03■□□□□ 0.16
TRIM28-212ENST00000597995 WNT10BO00744 389 aa16.02■□□□□ 0.16
TRIM28-212ENST00000597995 UBE3BQ7Z3V4 1068 aa16.02■□□□□ 0.16
TRIM28-212ENST00000597995 TSR2Q969E8 191 aaKnown RBP16.02■□□□□ 0.16
TRIM28-212ENST00000597995 ANKRD2Q9GZV1 360 aa16.02■□□□□ 0.16
TRIM28-212ENST00000597995 UBE2Q2LH0YL09 131 aa16.01■□□□□ 0.15
TRIM28-212ENST00000597995 SLC4A2P04920 1241 aa16.01■□□□□ 0.15
TRIM28-212ENST00000597995 NF2P35240 595 aa16.01■□□□□ 0.15
TRIM28-212ENST00000597995 TWISTNBQ3B726 338 aaPredicted RBP16.01■□□□□ 0.15
TRIM28-212ENST00000597995 NCBP3Q53F19 620 aaKnown RBP16.01■□□□□ 0.15
TRIM28-212ENST00000597995 WWC1Q8IX03 1113 aa16.01■□□□□ 0.15
TRIM28-212ENST00000597995 ZNF804BA4D1E1 1349 aa16■□□□□ 0.15
TRIM28-212ENST00000597995 IL16Q14005 1332 aa16■□□□□ 0.15
TRIM28-212ENST00000597995 CSF1RP07333 972 aa16■□□□□ 0.15
TRIM28-212ENST00000597995 GCKRQ14397 625 aa16■□□□□ 0.15
TRIM28-212ENST00000597995 TTLL5Q6EMB2 1281 aa16■□□□□ 0.15
TRIM28-212ENST00000597995 MOB2Q70IA6 237 aa16■□□□□ 0.15
TRIM28-212ENST00000597995 G2E3Q7L622 706 aa16■□□□□ 0.15
TRIM28-212ENST00000597995 TXNRD3Q86VQ6 643 aa16■□□□□ 0.15
TRIM28-212ENST00000597995 MXD3Q9BW11 206 aa16■□□□□ 0.15
TRIM28-212ENST00000597995 ITGA6P23229 1130 aa15.99■□□□□ 0.15
TRIM28-212ENST00000597995 TM4SF4P48230 202 aa15.99■□□□□ 0.15
TRIM28-212ENST00000597995 CASP7P55210 303 aa15.99■□□□□ 0.15
TRIM28-212ENST00000597995 PKN2Q16513 984 aaKnown RBP15.99■□□□□ 0.15
TRIM28-212ENST00000597995 PRAMEF18Q5VWM3 479 aa15.99■□□□□ 0.15
TRIM28-212ENST00000597995 FBXW7Q969H0 707 aa15.99■□□□□ 0.15
TRIM28-212ENST00000597995 MPHOSPH8Q99549 860 aa15.99■□□□□ 0.15
TRIM28-212ENST00000597995 MYH16Q9H6N6 1097 aa15.99■□□□□ 0.15
TRIM28-212ENST00000597995 HDAC9Q9UKV0 1011 aa15.99■□□□□ 0.15
TRIM28-212ENST00000597995 SCAF8Q9UPN6 1271 aaKnown RBP15.99■□□□□ 0.15
TRIM28-212ENST00000597995 ZNF646O15015 1829 aaPredicted RBP15.98■□□□□ 0.15
TRIM28-212ENST00000597995 FLIIQ13045 1269 aa15.98■□□□□ 0.15
TRIM28-212ENST00000597995 TTLL12Q14166 644 aaPredicted RBP15.98■□□□□ 0.15
TRIM28-212ENST00000597995 NOM1Q5C9Z4 860 aaKnown RBP15.98■□□□□ 0.15
TRIM28-212ENST00000597995 APOBEC3FQ8IUX4 373 aaKnown RBP15.98■□□□□ 0.15
TRIM28-212ENST00000597995 LINS1Q8NG48 757 aa15.98■□□□□ 0.15
TRIM28-212ENST00000597995 ZBED3Q96IU2 234 aaPredicted RBP15.98■□□□□ 0.15
TRIM28-212ENST00000597995 SPEF2Q9C093 1822 aa15.98■□□□□ 0.15
TRIM28-212ENST00000597995 ARMC9Q7Z3E5 817 aa15.97■□□□□ 0.15
TRIM28-212ENST00000597995 DNAAF4Q8WXU2 420 aa15.97■□□□□ 0.15
TRIM28-212ENST00000597995 SASH1O94885 1247 aa15.96■□□□□ 0.15
TRIM28-212ENST00000597995 GTF2IP78347 998 aa15.96■□□□□ 0.15
TRIM28-212ENST00000597995 CHRNDQ07001 517 aa15.96■□□□□ 0.15
TRIM28-212ENST00000597995 SREBF2Q12772 1141 aa15.96■□□□□ 0.15
TRIM28-212ENST00000597995 C15orf52Q6ZUT6 534 aaKnown RBP15.96■□□□□ 0.15
TRIM28-212ENST00000597995 KIAA0825Q8IV33 1275 aa15.96■□□□□ 0.15
TRIM28-212ENST00000597995 CD209Q9NNX6 404 aa15.96■□□□□ 0.15
TRIM28-212ENST00000597995 PDE4DIPQ5VU43 2346 aa15.96■□□□□ 0.15
TRIM28-212ENST00000597995 TNRC18O15417 2968 aaPredicted RBP15.96■□□□□ 0.14
TRIM28-212ENST00000597995 CACNA1FO60840 1977 aa15.95■□□□□ 0.14
TRIM28-212ENST00000597995 ANKRD18BA2A2Z9 1011 aa15.95■□□□□ 0.14
TRIM28-212ENST00000597995 TBC1D8O95759 1140 aa15.95■□□□□ 0.14
TRIM28-212ENST00000597995 KLRK1P26718 216 aa15.95■□□□□ 0.14
TRIM28-212ENST00000597995 KCNJ4P48050 445 aa15.95■□□□□ 0.14
TRIM28-212ENST00000597995 SOX10P56693 466 aa15.95■□□□□ 0.14
TRIM28-212ENST00000597995 PTPN12Q05209 780 aaKnown RBP15.95■□□□□ 0.14
TRIM28-212ENST00000597995 FKBP5Q13451 457 aaPredicted RBP15.95■□□□□ 0.14
TRIM28-212ENST00000597995 LDLRAD1Q5T700 205 aa15.95■□□□□ 0.14
TRIM28-212ENST00000597995 ZNF296Q8WUU4 475 aaPredicted RBP15.95■□□□□ 0.14
TRIM28-212ENST00000597995 CFHR5Q9BXR6 569 aa15.95■□□□□ 0.14
TRIM28-212ENST00000597995 SALL2Q9Y467 1007 aaPredicted RBP15.95■□□□□ 0.14
TRIM28-212ENST00000597995 GPR25O00155 361 aa15.94■□□□□ 0.14
TRIM28-212ENST00000597995 MTMR14Q8NCE2 650 aa15.94■□□□□ 0.14
TRIM28-212ENST00000597995 HPS5Q9UPZ3 1129 aa15.94■□□□□ 0.14
TRIM28-212ENST00000597995 COL1A1P02452 1464 aaPredicted RBP15.94■□□□□ 0.14
TRIM28-212ENST00000597995 IRS2Q9Y4H2 1338 aa15.94■□□□□ 0.14
TRIM28-212ENST00000597995 VAMP4O75379 141 aa15.93■□□□□ 0.14
TRIM28-212ENST00000597995 DLGAP5Q15398 846 aa15.93■□□□□ 0.14
TRIM28-212ENST00000597995 FAM9BQ8IZU0 186 aa15.93■□□□□ 0.14
TRIM28-212ENST00000597995 SPINK5Q9NQ38 1064 aaPredicted RBP15.93■□□□□ 0.14
TRIM28-212ENST00000597995 ALDH1A1P00352 501 aa15.92■□□□□ 0.14
TRIM28-212ENST00000597995 INHBEP58166 350 aa15.92■□□□□ 0.14
TRIM28-212ENST00000597995 FKBP1AP62942 108 aaKnown RBP15.92■□□□□ 0.14
TRIM28-212ENST00000597995 FOXO4P98177 505 aa15.92■□□□□ 0.14
TRIM28-212ENST00000597995 IFIT5Q13325 482 aaKnown RBP15.92■□□□□ 0.14
TRIM28-212ENST00000597995 MAP3K11Q16584 847 aa15.92■□□□□ 0.14
TRIM28-212ENST00000597995 SPRYD7Q5W111 196 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms