RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 CNOT7Q9UIV1 285 aaKnown RBP11.85□□□□□ -0.51
TRIM28-208ENST00000597172 ZNRF3Q9ULT6 936 aa11.85□□□□□ -0.51
TRIM28-208ENST00000597172 UTYO14607 1347 aa11.85□□□□□ -0.51
TRIM28-208ENST00000597172 LAMA3Q16787 3333 aa11.84□□□□□ -0.51
TRIM28-208ENST00000597172 H7C1D1 291 aa11.84□□□□□ -0.51
TRIM28-208ENST00000597172 H7C1W4 665 aa11.84□□□□□ -0.51
TRIM28-208ENST00000597172 NBPF7P0C2Y1 421 aaPredicted RBP11.84□□□□□ -0.51
TRIM28-208ENST00000597172 GPTP24298 496 aa11.84□□□□□ -0.51
TRIM28-208ENST00000597172 CASP7P55210 303 aa11.84□□□□□ -0.51
TRIM28-208ENST00000597172 NLRP10Q86W26 655 aa11.84□□□□□ -0.51
TRIM28-208ENST00000597172 JARID2Q92833 1246 aaPredicted RBP11.84□□□□□ -0.51
TRIM28-208ENST00000597172 CWC25Q9NXE8 425 aaPredicted RBP11.84□□□□□ -0.51
TRIM28-208ENST00000597172 PCDHB15Q9Y5E8 787 aa11.84□□□□□ -0.51
TRIM28-208ENST00000597172 SCN7AQ01118 1682 aa11.84□□□□□ -0.51
TRIM28-208ENST00000597172 UBN2Q6ZU65 1347 aa11.84□□□□□ -0.51
TRIM28-208ENST00000597172 RBBP6Q7Z6E9 1792 aaKnown RBP11.83□□□□□ -0.52
TRIM28-208ENST00000597172 SHTN1A0MZ66 631 aa11.83□□□□□ -0.52
TRIM28-208ENST00000597172 ADM5C9JUS6 153 aa11.83□□□□□ -0.52
TRIM28-208ENST00000597172 GRM8O00222 908 aa11.83□□□□□ -0.52
TRIM28-208ENST00000597172 AAMPQ13685 434 aa11.83□□□□□ -0.52
TRIM28-208ENST00000597172 AOC3Q16853 763 aa11.83□□□□□ -0.52
TRIM28-208ENST00000597172 SUSD4Q5VX71 490 aa11.83□□□□□ -0.52
TRIM28-208ENST00000597172 TMEM106CQ9BVX2 250 aa11.83□□□□□ -0.52
TRIM28-208ENST00000597172 C1orf115Q9H7X2 142 aa11.83□□□□□ -0.52
TRIM28-208ENST00000597172 C9orf78Q9NZ63 289 aaPredicted RBP11.83□□□□□ -0.52
TRIM28-208ENST00000597172 TRIM17Q9Y577 477 aa11.83□□□□□ -0.52
TRIM28-208ENST00000597172 GNAI3P08754 354 aa11.82□□□□□ -0.52
TRIM28-208ENST00000597172 TNIP1Q15025 636 aa11.82□□□□□ -0.52
TRIM28-208ENST00000597172 DCPSQ96C86 337 aaKnown RBP11.82□□□□□ -0.52
TRIM28-208ENST00000597172 KAZALD1Q96I82 304 aa11.82□□□□□ -0.52
TRIM28-208ENST00000597172 CHMP4BQ9H444 224 aaKnown RBP11.82□□□□□ -0.52
TRIM28-208ENST00000597172 NIP7Q9Y221 180 aaKnown RBP eCLIP11.82□□□□□ -0.52
TRIM28-208ENST00000597172 ZNF652Q9Y2D9 606 aa11.82□□□□□ -0.52
TRIM28-208ENST00000597172 NUP98P52948 1817 aa11.81□□□□□ -0.52
TRIM28-208ENST00000597172 RAD17O75943 681 aa11.81□□□□□ -0.52
TRIM28-208ENST00000597172 GNAI2P04899 355 aa11.81□□□□□ -0.52
TRIM28-208ENST00000597172 TM4SF4P48230 202 aa11.81□□□□□ -0.52
TRIM28-208ENST00000597172 OTOP1Q7RTM1 612 aa11.81□□□□□ -0.52
TRIM28-208ENST00000597172 SIRT2Q8IXJ6 389 aa11.81□□□□□ -0.52
TRIM28-208ENST00000597172 MICALL2Q8IY33 904 aa11.81□□□□□ -0.52
TRIM28-208ENST00000597172 ZBTB38Q8NAP3 1195 aaPredicted RBP11.81□□□□□ -0.52
TRIM28-208ENST00000597172 ARMC5Q96C12 935 aa11.81□□□□□ -0.52
TRIM28-208ENST00000597172 SUCLG2Q96I99 432 aa11.81□□□□□ -0.52
TRIM28-208ENST00000597172 VPS33BQ9H267 617 aa11.81□□□□□ -0.52
TRIM28-208ENST00000597172 R3HDMLQ9H3Y0 253 aa11.81□□□□□ -0.52
TRIM28-208ENST00000597172 PRDM6Q9NQX0 595 aa11.81□□□□□ -0.52
TRIM28-208ENST00000597172 PPP4R2Q9NY27 417 aa11.81□□□□□ -0.52
TRIM28-208ENST00000597172 VCANP13611 3396 aa11.8□□□□□ -0.52
TRIM28-208ENST00000597172 FAM177BA6PVY3 158 aa11.8□□□□□ -0.52
TRIM28-208ENST00000597172 PCCAP05165 728 aaPredicted RBP11.8□□□□□ -0.52
TRIM28-208ENST00000597172 UBTFL1P0CB47 393 aaPredicted RBP11.8□□□□□ -0.52
TRIM28-208ENST00000597172 PARP10Q53GL7 1025 aa11.8□□□□□ -0.52
TRIM28-208ENST00000597172 RTL5Q5HYW3 569 aaPredicted RBP11.8□□□□□ -0.52
TRIM28-208ENST00000597172 EPHA10Q5JZY3 1008 aa11.8□□□□□ -0.52
TRIM28-208ENST00000597172 SAMD7Q7Z3H4 446 aa11.8□□□□□ -0.52
TRIM28-208ENST00000597172 UBE3BQ7Z3V4 1068 aa11.8□□□□□ -0.52
TRIM28-208ENST00000597172 FAM89AQ96GI7 184 aa11.8□□□□□ -0.52
TRIM28-208ENST00000597172 TRMT112Q9UI30 125 aaKnown RBP11.8□□□□□ -0.52
TRIM28-208ENST00000597172 LRRFIP2Q9Y608 721 aaKnown RBP11.8□□□□□ -0.52
TRIM28-208ENST00000597172 NTSR2O95665 410 aa11.79□□□□□ -0.52
TRIM28-208ENST00000597172 IGHDP01880 384 aa11.79□□□□□ -0.52
TRIM28-208ENST00000597172 GTF2E1P29083 439 aaPredicted RBP11.79□□□□□ -0.52
TRIM28-208ENST00000597172 FOXO4P98177 505 aa11.79□□□□□ -0.52
TRIM28-208ENST00000597172 TBC1D10BQ4KMP7 808 aaPredicted RBP11.79□□□□□ -0.52
TRIM28-208ENST00000597172 CEP85Q6P2H3 762 aa11.79□□□□□ -0.52
TRIM28-208ENST00000597172 UTP14AQ9BVJ6 771 aaKnown RBP11.79□□□□□ -0.52
TRIM28-208ENST00000597172 CFHR5Q9BXR6 569 aa11.79□□□□□ -0.52
TRIM28-208ENST00000597172 PRO3102Q9H379 93 aa11.79□□□□□ -0.52
TRIM28-208ENST00000597172 SOX1O00570 391 aaPredicted RBP11.78□□□□□ -0.52
TRIM28-208ENST00000597172 ATP8B2P98198 1209 aa11.78□□□□□ -0.52
TRIM28-208ENST00000597172 CRY2Q49AN0 593 aa11.78□□□□□ -0.52
TRIM28-208ENST00000597172 B4GALNT3Q6L9W6 998 aa11.78□□□□□ -0.52
TRIM28-208ENST00000597172 PPP1R42Q7Z4L9 355 aa11.78□□□□□ -0.52
TRIM28-208ENST00000597172 SULF1Q8IWU6 871 aa11.78□□□□□ -0.52
TRIM28-208ENST00000597172 RPAP2Q8IXW5 612 aaPredicted RBP11.78□□□□□ -0.52
TRIM28-208ENST00000597172 ANKRD44Q8N8A2 993 aa11.78□□□□□ -0.52
TRIM28-208ENST00000597172 LRCH3Q96II8 777 aa11.78□□□□□ -0.52
TRIM28-208ENST00000597172 PTPN22Q9Y2R2 807 aa11.78□□□□□ -0.52
TRIM28-208ENST00000597172 HOXA10P31260 410 aaPredicted RBP11.77□□□□□ -0.53
TRIM28-208ENST00000597172 FKBP1BP68106 108 aa11.77□□□□□ -0.53
TRIM28-208ENST00000597172 SLC51AQ86UW1 340 aa11.77□□□□□ -0.53
TRIM28-208ENST00000597172 NUTM1Q86Y26 1132 aa11.77□□□□□ -0.53
TRIM28-208ENST00000597172 DPF3Q92784 378 aa11.77□□□□□ -0.53
TRIM28-208ENST00000597172 RPGRQ92834 1020 aaKnown RBP11.77□□□□□ -0.53
TRIM28-208ENST00000597172 CDCA5Q96FF9 252 aa11.77□□□□□ -0.53
TRIM28-208ENST00000597172 PLA2G12BQ9BX93 195 aa11.77□□□□□ -0.53
TRIM28-208ENST00000597172 TMX4Q9H1E5 349 aaPredicted RBP11.77□□□□□ -0.53
TRIM28-208ENST00000597172 BICC1Q9H694 974 aaKnown RBP11.77□□□□□ -0.53
TRIM28-208ENST00000597172 ANKRD36CQ5JPF3 1778 aa11.77□□□□□ -0.53
TRIM28-208ENST00000597172 PNMA6EA0A0J9YXQ4 647 aa11.76□□□□□ -0.53
TRIM28-208ENST00000597172 IRS4O14654 1257 aaPredicted RBP11.76□□□□□ -0.53
TRIM28-208ENST00000597172 PPEF1O14829 653 aaPredicted RBP11.76□□□□□ -0.53
TRIM28-208ENST00000597172 HCLS1P14317 486 aaPredicted RBP11.76□□□□□ -0.53
TRIM28-208ENST00000597172 MTX1Q13505 466 aa11.76□□□□□ -0.53
TRIM28-208ENST00000597172 RABL6Q3YEC7 729 aaPredicted RBP11.76□□□□□ -0.53
TRIM28-208ENST00000597172 SLC10A5Q5PT55 438 aa11.76□□□□□ -0.53
TRIM28-208ENST00000597172 RBM26Q5T8P6 1007 aaKnown RBP11.76□□□□□ -0.53
TRIM28-208ENST00000597172 MPNDQ8N594 471 aa11.76□□□□□ -0.53
TRIM28-208ENST00000597172 SUPT20HQ8NEM7 779 aa11.76□□□□□ -0.53
TRIM28-208ENST00000597172 DPF2Q92785 391 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms