RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 C20orf194Q5TEA3 1177 aa13.82□□□□□ -0.2
LIG1-211ENST00000596457 PA2G4Q9UQ80 394 aaKnown RBP13.82□□□□□ -0.2
LIG1-211ENST00000596457 ZBTB7BO15156 539 aaPredicted RBP13.81□□□□□ -0.2
LIG1-211ENST00000596457 KLRK1P26718 216 aa13.81□□□□□ -0.2
LIG1-211ENST00000596457 PTPN12Q05209 780 aaKnown RBP13.81□□□□□ -0.2
LIG1-211ENST00000596457 TNIP1Q15025 636 aa13.81□□□□□ -0.2
LIG1-211ENST00000596457 TXNRD3Q86VQ6 643 aa13.81□□□□□ -0.2
LIG1-211ENST00000596457 GPC2Q8N158 579 aa13.81□□□□□ -0.2
LIG1-211ENST00000596457 RIPOR2Q9Y4F9 1068 aa13.81□□□□□ -0.2
LIG1-211ENST00000596457 MROH5Q6ZUA9 1318 aa13.81□□□□□ -0.2
LIG1-211ENST00000596457 PSMD14O00487 310 aa13.8□□□□□ -0.2
LIG1-211ENST00000596457 LMOD1P29536 600 aaPredicted RBP13.8□□□□□ -0.2
LIG1-211ENST00000596457 MVPQ14764 893 aaKnown RBP13.8□□□□□ -0.2
LIG1-211ENST00000596457 MED23Q9ULK4 1368 aa13.8□□□□□ -0.2
LIG1-211ENST00000596457 PNMA6EA0A0J9YXQ4 647 aa13.79□□□□□ -0.2
LIG1-211ENST00000596457 EYA2O00167 538 aa13.79□□□□□ -0.2
LIG1-211ENST00000596457 EAPPQ56P03 285 aaPredicted RBP13.79□□□□□ -0.2
LIG1-211ENST00000596457 HACL1Q9UJ83 578 aa13.79□□□□□ -0.2
LIG1-211ENST00000596457 ZBTB12Q9Y330 459 aaPredicted RBP13.79□□□□□ -0.2
LIG1-211ENST00000596457 SCN9AQ15858 1988 aa13.78□□□□□ -0.2
LIG1-211ENST00000596457 GMPSP49915 693 aaPredicted RBP13.78□□□□□ -0.2
LIG1-211ENST00000596457 ATP8B2P98198 1209 aa13.78□□□□□ -0.2
LIG1-211ENST00000596457 CHADLQ6NUI6 762 aa13.78□□□□□ -0.2
LIG1-211ENST00000596457 PNMA8AQ86V59 439 aaPredicted RBP13.78□□□□□ -0.2
LIG1-211ENST00000596457 COA1Q9GZY4 146 aa13.78□□□□□ -0.2
LIG1-211ENST00000596457 DDX19BQ9UMR2 479 aa13.78□□□□□ -0.2
LIG1-211ENST00000596457 CLEC11AQ9Y240 323 aa13.78□□□□□ -0.2
LIG1-211ENST00000596457 PDE8BO95263 885 aa13.77□□□□□ -0.21
LIG1-211ENST00000596457 EPHX2P34913 555 aa13.77□□□□□ -0.21
LIG1-211ENST00000596457 EPS15P42566 896 aa13.77□□□□□ -0.21
LIG1-211ENST00000596457 GYG1P46976 350 aa13.77□□□□□ -0.21
LIG1-211ENST00000596457 MLLT1Q03111 559 aaPredicted RBP13.77□□□□□ -0.21
LIG1-211ENST00000596457 UBE4AQ14139 1066 aa13.77□□□□□ -0.21
LIG1-211ENST00000596457 ATG9AQ7Z3C6 839 aa13.77□□□□□ -0.21
LIG1-211ENST00000596457 ZNF804AQ7Z570 1209 aa13.77□□□□□ -0.21
LIG1-211ENST00000596457 PODNQ7Z5L7 613 aa13.77□□□□□ -0.21
LIG1-211ENST00000596457 LDHDQ86WU2 507 aa13.77□□□□□ -0.21
LIG1-211ENST00000596457 TAF1DQ9H5J8 278 aaPredicted RBP13.77□□□□□ -0.21
LIG1-211ENST00000596457 CEP126Q9P2H0 1117 aa13.77□□□□□ -0.21
LIG1-211ENST00000596457 USP17L3A6NCW0 530 aa13.76□□□□□ -0.21
LIG1-211ENST00000596457 USP17L4A6NCW7 530 aa13.76□□□□□ -0.21
LIG1-211ENST00000596457 SCNN1DP51172 638 aa13.76□□□□□ -0.21
LIG1-211ENST00000596457 RRP1P56182 461 aaKnown RBP13.76□□□□□ -0.21
LIG1-211ENST00000596457 G3BP1Q13283 466 aaKnown RBP eCLIP13.76□□□□□ -0.21
LIG1-211ENST00000596457 OS9Q13438 667 aaPredicted RBP13.76□□□□□ -0.21
LIG1-211ENST00000596457 MTX1Q13505 466 aa13.76□□□□□ -0.21
LIG1-211ENST00000596457 PDE3AQ14432 1141 aa13.76□□□□□ -0.21
LIG1-211ENST00000596457 USP17L1Q7RTZ2 530 aa13.76□□□□□ -0.21
LIG1-211ENST00000596457 VPS37DQ86XT2 251 aa13.76□□□□□ -0.21
LIG1-211ENST00000596457 CD209Q9NNX6 404 aa13.76□□□□□ -0.21
LIG1-211ENST00000596457 COPRSQ9NQ92 184 aa13.76□□□□□ -0.21
LIG1-211ENST00000596457 PSME4Q14997 1843 aa13.76□□□□□ -0.21
LIG1-211ENST00000596457 SHTN1A0MZ66 631 aa13.75□□□□□ -0.21
LIG1-211ENST00000596457 CIAO1O76071 339 aa13.75□□□□□ -0.21
LIG1-211ENST00000596457 IFIT1P09914 478 aaKnown RBP13.75□□□□□ -0.21
LIG1-211ENST00000596457 POTEIP0CG38 1075 aa13.75□□□□□ -0.21
LIG1-211ENST00000596457 POTEJP0CG39 1038 aa13.75□□□□□ -0.21
LIG1-211ENST00000596457 IL15P40933 162 aaPredicted RBP13.75□□□□□ -0.21
LIG1-211ENST00000596457 GTF2IP78347 998 aa13.75□□□□□ -0.21
LIG1-211ENST00000596457 RBM26Q5T8P6 1007 aaKnown RBP13.75□□□□□ -0.21
LIG1-211ENST00000596457 VGLL2Q8N8G2 317 aa13.75□□□□□ -0.21
LIG1-211ENST00000596457 MXD3Q9BW11 206 aa13.75□□□□□ -0.21
LIG1-211ENST00000596457 CHMP4BQ9H444 224 aaKnown RBP13.75□□□□□ -0.21
LIG1-211ENST00000596457 GPRC5DQ9NZD1 345 aa13.75□□□□□ -0.21
LIG1-211ENST00000596457 CNOT7Q9UIV1 285 aaKnown RBP13.75□□□□□ -0.21
LIG1-211ENST00000596457 IQSEC3Q9UPP2 1182 aaPredicted RBP13.75□□□□□ -0.21
LIG1-211ENST00000596457 JAG2Q9Y219 1238 aa13.75□□□□□ -0.21
LIG1-211ENST00000596457 H7C1D1 291 aa13.74□□□□□ -0.21
LIG1-211ENST00000596457 FRAT2O75474 233 aaPredicted RBP13.74□□□□□ -0.21
LIG1-211ENST00000596457 SURF6O75683 361 aaKnown RBP13.74□□□□□ -0.21
LIG1-211ENST00000596457 VIL1P09327 827 aaKnown RBP13.74□□□□□ -0.21
LIG1-211ENST00000596457 SLC5A1P13866 664 aa13.74□□□□□ -0.21
LIG1-211ENST00000596457 HIBADHP31937 336 aaKnown RBP13.74□□□□□ -0.21
LIG1-211ENST00000596457 TFCP2Q12800 502 aa13.74□□□□□ -0.21
LIG1-211ENST00000596457 PUM3Q15397 648 aaKnown RBP13.74□□□□□ -0.21
LIG1-211ENST00000596457 CAVIN4Q5BKX8 364 aa13.74□□□□□ -0.21
LIG1-211ENST00000596457 TTLL5Q6EMB2 1281 aa13.74□□□□□ -0.21
LIG1-211ENST00000596457 C15orf52Q6ZUT6 534 aaKnown RBP13.74□□□□□ -0.21
LIG1-211ENST00000596457 MICALL2Q8IY33 904 aa13.74□□□□□ -0.21
LIG1-211ENST00000596457 FBXO3Q9UK99 471 aa13.74□□□□□ -0.21
LIG1-211ENST00000596457 IRS2Q9Y4H2 1338 aa13.73□□□□□ -0.21
LIG1-211ENST00000596457 BCAMP50895 628 aa13.73□□□□□ -0.21
LIG1-211ENST00000596457 POLA2Q14181 598 aa13.73□□□□□ -0.21
LIG1-211ENST00000596457 ATP2B3Q16720 1220 aa13.73□□□□□ -0.21
LIG1-211ENST00000596457 CEP85Q6P2H3 762 aa13.73□□□□□ -0.21
LIG1-211ENST00000596457 RSBN1LQ6PCB5 846 aaPredicted RBP13.73□□□□□ -0.21
LIG1-211ENST00000596457 SSH3Q8TE77 659 aa13.73□□□□□ -0.21
LIG1-211ENST00000596457 FAM84BQ96KN1 310 aaPredicted RBP13.73□□□□□ -0.21
LIG1-211ENST00000596457 BCL11AQ9H165 835 aa13.73□□□□□ -0.21
LIG1-211ENST00000596457 ZBTB40Q9NUA8 1239 aa13.73□□□□□ -0.21
LIG1-211ENST00000596457 FGFR2P21802 821 aa13.72□□□□□ -0.21
LIG1-211ENST00000596457 RPS12P25398 132 aaKnown RBP13.72□□□□□ -0.21
LIG1-211ENST00000596457 TIMM10P62072 90 aa13.72□□□□□ -0.21
LIG1-211ENST00000596457 CHAF1AQ13111 956 aaPredicted RBP13.72□□□□□ -0.21
LIG1-211ENST00000596457 SAMD7Q7Z3H4 446 aa13.72□□□□□ -0.21
LIG1-211ENST00000596457 LPIN2Q92539 896 aa13.72□□□□□ -0.21
LIG1-211ENST00000596457 NEUROD6Q96NK8 337 aa13.72□□□□□ -0.21
LIG1-211ENST00000596457 CREBZFQ9NS37 354 aa13.72□□□□□ -0.21
LIG1-211ENST00000596457 ADARB2Q9NS39 739 aaKnown RBP13.72□□□□□ -0.21
LIG1-211ENST00000596457 MYH13Q9UKX3 1938 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms