RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 PODNQ7Z5L7 613 aa13.95□□□□□ -0.18
VRK3-210ENST00000596121 FTSJ3Q8IY81 847 aaKnown RBP13.95□□□□□ -0.18
VRK3-210ENST00000596121 C1orf115Q9H7X2 142 aa13.95□□□□□ -0.18
VRK3-210ENST00000596121 MROH5Q6ZUA9 1318 aa13.94□□□□□ -0.18
VRK3-210ENST00000596121 PNMA6EA0A0J9YXQ4 647 aa13.94□□□□□ -0.18
VRK3-210ENST00000596121 EGFRP00533 1210 aa13.94□□□□□ -0.18
VRK3-210ENST00000596121 GNAI2P04899 355 aa13.94□□□□□ -0.18
VRK3-210ENST00000596121 EAPPQ56P03 285 aaPredicted RBP13.94□□□□□ -0.18
VRK3-210ENST00000596121 ITPRIPQ8IWB1 547 aa13.94□□□□□ -0.18
VRK3-210ENST00000596121 GMLQ99445 158 aa13.94□□□□□ -0.18
VRK3-210ENST00000596121 COA1Q9GZY4 146 aa13.94□□□□□ -0.18
VRK3-210ENST00000596121 SIL1Q9H173 461 aa13.94□□□□□ -0.18
VRK3-210ENST00000596121 CD209Q9NNX6 404 aa13.94□□□□□ -0.18
VRK3-210ENST00000596121 CNOT7Q9UIV1 285 aaKnown RBP13.94□□□□□ -0.18
VRK3-210ENST00000596121 USP17L3A6NCW0 530 aa13.93□□□□□ -0.18
VRK3-210ENST00000596121 USP17L4A6NCW7 530 aa13.93□□□□□ -0.18
VRK3-210ENST00000596121 G3V3G9 751 aa13.93□□□□□ -0.18
VRK3-210ENST00000596121 SRGAP3O43295 1099 aa13.93□□□□□ -0.18
VRK3-210ENST00000596121 PDE8BO95263 885 aa13.93□□□□□ -0.18
VRK3-210ENST00000596121 GYG1P46976 350 aa13.93□□□□□ -0.18
VRK3-210ENST00000596121 FSTL1Q12841 308 aa13.93□□□□□ -0.18
VRK3-210ENST00000596121 UBE4AQ14139 1066 aa13.93□□□□□ -0.18
VRK3-210ENST00000596121 METTL24Q5JXM2 366 aa13.93□□□□□ -0.18
VRK3-210ENST00000596121 DACT2Q5SW24 774 aa13.93□□□□□ -0.18
VRK3-210ENST00000596121 DCAF8Q5TAQ9 597 aa13.93□□□□□ -0.18
VRK3-210ENST00000596121 CHADLQ6NUI6 762 aa13.93□□□□□ -0.18
VRK3-210ENST00000596121 RSBN1LQ6PCB5 846 aaPredicted RBP13.93□□□□□ -0.18
VRK3-210ENST00000596121 USP17L1Q7RTZ2 530 aa13.93□□□□□ -0.18
VRK3-210ENST00000596121 SMC1BQ8NDV3 1235 aa13.93□□□□□ -0.18
VRK3-210ENST00000596121 TRPM4Q8TD43 1214 aa13.93□□□□□ -0.18
VRK3-210ENST00000596121 DPF2Q92785 391 aa13.93□□□□□ -0.18
VRK3-210ENST00000596121 FAM84BQ96KN1 310 aaPredicted RBP13.93□□□□□ -0.18
VRK3-210ENST00000596121 COPRSQ9NQ92 184 aa13.93□□□□□ -0.18
VRK3-210ENST00000596121 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.93□□□□□ -0.18
VRK3-210ENST00000596121 ADAMTSL1Q8N6G6 1762 aa13.93□□□□□ -0.18
VRK3-210ENST00000596121 HSPA6P17066 643 aa13.92□□□□□ -0.18
VRK3-210ENST00000596121 FGFR2P21802 821 aa13.92□□□□□ -0.18
VRK3-210ENST00000596121 LMOD1P29536 600 aaPredicted RBP13.92□□□□□ -0.18
VRK3-210ENST00000596121 MAP1SQ66K74 1059 aaPredicted RBP13.92□□□□□ -0.18
VRK3-210ENST00000596121 SAMD7Q7Z3H4 446 aa13.92□□□□□ -0.18
VRK3-210ENST00000596121 LDHDQ86WU2 507 aa13.92□□□□□ -0.18
VRK3-210ENST00000596121 MICALL2Q8IY33 904 aa13.92□□□□□ -0.18
VRK3-210ENST00000596121 HDAC5Q9UQL6 1122 aa13.92□□□□□ -0.18
VRK3-210ENST00000596121 ZNF646O15015 1829 aaPredicted RBP13.92□□□□□ -0.18
VRK3-210ENST00000596121 CIAO1O76071 339 aa13.91□□□□□ -0.18
VRK3-210ENST00000596121 ITGBL1O95965 494 aaPredicted RBP13.91□□□□□ -0.18
VRK3-210ENST00000596121 IL1R1P14778 569 aa13.91□□□□□ -0.18
VRK3-210ENST00000596121 HTRA3P83110 453 aa13.91□□□□□ -0.18
VRK3-210ENST00000596121 USP50Q70EL3 339 aaPredicted RBP13.91□□□□□ -0.18
VRK3-210ENST00000596121 FBXO33Q7Z6M2 555 aa13.91□□□□□ -0.18
VRK3-210ENST00000596121 PNMA8AQ86V59 439 aaPredicted RBP13.91□□□□□ -0.18
VRK3-210ENST00000596121 CERS5Q8N5B7 392 aa13.91□□□□□ -0.18
VRK3-210ENST00000596121 ADARB2Q9NS39 739 aaKnown RBP13.91□□□□□ -0.18
VRK3-210ENST00000596121 CLEC11AQ9Y240 323 aa13.91□□□□□ -0.18
VRK3-210ENST00000596121 COG6Q9Y2V7 657 aa13.91□□□□□ -0.18
VRK3-210ENST00000596121 RPS12P25398 132 aaKnown RBP13.9□□□□□ -0.18
VRK3-210ENST00000596121 GTF2IP78347 998 aa13.9□□□□□ -0.18
VRK3-210ENST00000596121 ATP8B2P98198 1209 aa13.9□□□□□ -0.18
VRK3-210ENST00000596121 FMR1Q06787 632 aaKnown RBP eCLIP13.9□□□□□ -0.18
VRK3-210ENST00000596121 POLA2Q14181 598 aa13.9□□□□□ -0.18
VRK3-210ENST00000596121 STRIP1Q5VSL9 837 aa13.9□□□□□ -0.18
VRK3-210ENST00000596121 TTLL5Q6EMB2 1281 aa13.9□□□□□ -0.18
VRK3-210ENST00000596121 AGBL3Q8NEM8 1001 aa13.9□□□□□ -0.18
VRK3-210ENST00000596121 TDRD7Q8NHU6 1098 aaKnown RBP13.9□□□□□ -0.18
VRK3-210ENST00000596121 JAG2Q9Y219 1238 aa13.9□□□□□ -0.18
VRK3-210ENST00000596121 CEP350Q5VT06 3117 aa13.9□□□□□ -0.18
VRK3-210ENST00000596121 PSME4Q14997 1843 aa13.9□□□□□ -0.18
VRK3-210ENST00000596121 ZNF609O15014 1411 aa13.9□□□□□ -0.19
VRK3-210ENST00000596121 ASTN2O75129 1339 aaPredicted RBP13.9□□□□□ -0.19
VRK3-210ENST00000596121 H7C1D1 291 aa13.89□□□□□ -0.19
VRK3-210ENST00000596121 HIBADHP31937 336 aaKnown RBP13.89□□□□□ -0.19
VRK3-210ENST00000596121 IL15P40933 162 aaPredicted RBP13.89□□□□□ -0.19
VRK3-210ENST00000596121 BCAMP50895 628 aa13.89□□□□□ -0.19
VRK3-210ENST00000596121 ZNF280AP59817 542 aaPredicted RBP13.89□□□□□ -0.19
VRK3-210ENST00000596121 MVPQ14764 893 aaKnown RBP13.89□□□□□ -0.19
VRK3-210ENST00000596121 TBC1D10BQ4KMP7 808 aaPredicted RBP13.89□□□□□ -0.19
VRK3-210ENST00000596121 RBM26Q5T8P6 1007 aaKnown RBP13.89□□□□□ -0.19
VRK3-210ENST00000596121 ZNF804AQ7Z570 1209 aa13.89□□□□□ -0.19
VRK3-210ENST00000596121 CNTROBQ8N137 903 aa13.89□□□□□ -0.19
VRK3-210ENST00000596121 SSH3Q8TE77 659 aa13.89□□□□□ -0.19
VRK3-210ENST00000596121 FBXW7Q969H0 707 aa13.89□□□□□ -0.19
VRK3-210ENST00000596121 PGAP2Q9UHJ9 254 aa13.89□□□□□ -0.19
VRK3-210ENST00000596121 FBXO3Q9UK99 471 aa13.89□□□□□ -0.19
VRK3-210ENST00000596121 PASKQ96RG2 1323 aa13.89□□□□□ -0.19
VRK3-210ENST00000596121 PUM3Q15397 648 aaKnown RBP13.88□□□□□ -0.19
VRK3-210ENST00000596121 CEP85Q6P2H3 762 aa13.88□□□□□ -0.19
VRK3-210ENST00000596121 DLK2Q6UY11 383 aa13.88□□□□□ -0.19
VRK3-210ENST00000596121 ZBTB40Q9NUA8 1239 aa13.88□□□□□ -0.19
VRK3-210ENST00000596121 IQSEC3Q9UPP2 1182 aaPredicted RBP13.88□□□□□ -0.19
VRK3-210ENST00000596121 SASH1O94885 1247 aa13.87□□□□□ -0.19
VRK3-210ENST00000596121 USP17L8P0C7I0 530 aa13.87□□□□□ -0.19
VRK3-210ENST00000596121 MS4A1P11836 297 aa13.87□□□□□ -0.19
VRK3-210ENST00000596121 TFCP2Q12800 502 aa13.87□□□□□ -0.19
VRK3-210ENST00000596121 GRIK5Q16478 980 aa13.87□□□□□ -0.19
VRK3-210ENST00000596121 LPIN2Q92539 896 aa13.87□□□□□ -0.19
VRK3-210ENST00000596121 CEP126Q9P2H0 1117 aa13.87□□□□□ -0.19
VRK3-210ENST00000596121 TRAF5O00463 557 aa13.86□□□□□ -0.19
VRK3-210ENST00000596121 ADORA1P30542 326 aa13.86□□□□□ -0.19
VRK3-210ENST00000596121 APLP1P51693 650 aa13.86□□□□□ -0.19
VRK3-210ENST00000596121 PDE3AQ14432 1141 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms