RNA–Protein interactions for RNA: ENST00000593168.5

VMP1-217, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-217ENST00000593168 IQCA1LA6NCM1 817 aa16.48■□□□□ 0.23
VMP1-217ENST00000593168 GSPT1P15170 499 aaKnown RBP16.48■□□□□ 0.23
VMP1-217ENST00000593168 TNNI3KQ59H18 835 aa16.48■□□□□ 0.23
VMP1-217ENST00000593168 GPATCH3Q96I76 525 aa16.48■□□□□ 0.23
VMP1-217ENST00000593168 CEP126Q9P2H0 1117 aa16.48■□□□□ 0.23
VMP1-217ENST00000593168 FPGT-TNNI3KV9GXZ4 949 aa16.48■□□□□ 0.23
VMP1-217ENST00000593168 ZNF541Q9H0D2 1346 aa16.47■□□□□ 0.23
VMP1-217ENST00000593168 ITGBL1O95965 494 aaPredicted RBP16.47■□□□□ 0.23
VMP1-217ENST00000593168 VEGFBP49765 207 aa16.47■□□□□ 0.23
VMP1-217ENST00000593168 CCDC93Q567U6 631 aa16.47■□□□□ 0.23
VMP1-217ENST00000593168 OLFM4Q6UX06 510 aa16.47■□□□□ 0.23
VMP1-217ENST00000593168 CDC5LQ99459 802 aaKnown RBP16.47■□□□□ 0.23
VMP1-217ENST00000593168 ECHDC1Q9NTX5 307 aa16.47■□□□□ 0.23
VMP1-217ENST00000593168 EAPPQ56P03 285 aaPredicted RBP16.46■□□□□ 0.23
VMP1-217ENST00000593168 C3orf67Q6ZVT6 689 aa16.46■□□□□ 0.23
VMP1-217ENST00000593168 PRDM10Q9NQV6 1147 aa16.46■□□□□ 0.23
VMP1-217ENST00000593168 SEC31BQ9NQW1 1179 aa16.46■□□□□ 0.23
VMP1-217ENST00000593168 ZNF277Q9NRM2 450 aaPredicted RBP16.46■□□□□ 0.23
VMP1-217ENST00000593168 CNNM1Q9NRU3 951 aa16.46■□□□□ 0.23
VMP1-217ENST00000593168 AKAP2Q9Y2D5 859 aa16.46■□□□□ 0.23
VMP1-217ENST00000593168 TMEM88BA6NKF7 163 aa16.45■□□□□ 0.22
VMP1-217ENST00000593168 ERC2O15083 957 aa16.45■□□□□ 0.22
VMP1-217ENST00000593168 GLRX3O76003 335 aaKnown RBP16.45■□□□□ 0.22
VMP1-217ENST00000593168 NPR1P16066 1061 aa16.45■□□□□ 0.22
VMP1-217ENST00000593168 IGHMBP2P38935 993 aaKnown RBP16.45■□□□□ 0.22
VMP1-217ENST00000593168 FKBP4Q02790 459 aaKnown RBP eCLIP16.45■□□□□ 0.22
VMP1-217ENST00000593168 PI4K2BQ8TCG2 481 aa16.45■□□□□ 0.22
VMP1-217ENST00000593168 MPHOSPH8Q99549 860 aa16.45■□□□□ 0.22
VMP1-217ENST00000593168 CCDC8Q9H0W5 538 aaPredicted RBP16.45■□□□□ 0.22
VMP1-217ENST00000593168 MROH5Q6ZUA9 1318 aa16.45■□□□□ 0.22
VMP1-217ENST00000593168 KLRG2A4D1S0 409 aaPredicted RBP16.44■□□□□ 0.22
VMP1-217ENST00000593168 SDSP20132 328 aa16.44■□□□□ 0.22
VMP1-217ENST00000593168 METTL24Q5JXM2 366 aa16.44■□□□□ 0.22
VMP1-217ENST00000593168 HACL1Q9UJ83 578 aa16.44■□□□□ 0.22
VMP1-217ENST00000593168 CTCFP49711 727 aaPredicted RBP16.43■□□□□ 0.22
VMP1-217ENST00000593168 TSHZ3Q63HK5 1081 aa16.43■□□□□ 0.22
VMP1-217ENST00000593168 ANKRD18AQ8IVF6 992 aa16.43■□□□□ 0.22
VMP1-217ENST00000593168 VGLL2Q8N8G2 317 aa16.43■□□□□ 0.22
VMP1-217ENST00000593168 DBNLQ9UJU6 430 aaKnown RBP16.43■□□□□ 0.22
VMP1-217ENST00000593168 CLEC11AQ9Y240 323 aa16.43■□□□□ 0.22
VMP1-217ENST00000593168 A0A1B0GUL7 405 aa16.42■□□□□ 0.22
VMP1-217ENST00000593168 CDC45O75419 566 aa16.42■□□□□ 0.22
VMP1-217ENST00000593168 PDE8BO95263 885 aa16.42■□□□□ 0.22
VMP1-217ENST00000593168 EPHX2P34913 555 aa16.42■□□□□ 0.22
VMP1-217ENST00000593168 TIMM10P62072 90 aa16.42■□□□□ 0.22
VMP1-217ENST00000593168 AIDAQ96BJ3 306 aa16.42■□□□□ 0.22
VMP1-217ENST00000593168 BSDC1Q9NW68 430 aaPredicted RBP16.42■□□□□ 0.22
VMP1-217ENST00000593168 WBP1LQ9NX94 342 aa16.42■□□□□ 0.22
VMP1-217ENST00000593168 TLR7Q9NYK1 1049 aaKnown RBP16.42■□□□□ 0.22
VMP1-217ENST00000593168 LTBP1Q14766 1721 aa16.42■□□□□ 0.22
VMP1-217ENST00000593168 EIF5BO60841 1220 aaKnown RBP16.41■□□□□ 0.22
VMP1-217ENST00000593168 ATP5JP18859 108 aa16.41■□□□□ 0.22
VMP1-217ENST00000593168 LBX1P52954 281 aa16.41■□□□□ 0.22
VMP1-217ENST00000593168 RPS8P62241 208 aaKnown RBP16.41■□□□□ 0.22
VMP1-217ENST00000593168 CRY2Q49AN0 593 aa16.41■□□□□ 0.22
VMP1-217ENST00000593168 MAP1SQ66K74 1059 aaPredicted RBP16.41■□□□□ 0.22
VMP1-217ENST00000593168 DDX46Q7L014 1031 aaKnown RBP16.41■□□□□ 0.22
VMP1-217ENST00000593168 NEUROD6Q96NK8 337 aa16.41■□□□□ 0.22
VMP1-217ENST00000593168 DBNDD2Q9BQY9 259 aa16.41■□□□□ 0.22
VMP1-217ENST00000593168 ZNF609O15014 1411 aa16.41■□□□□ 0.22
VMP1-217ENST00000593168 SNED1Q8TER0 1413 aa16.41■□□□□ 0.22
VMP1-217ENST00000593168 COL4A5P29400 1685 aa16.4■□□□□ 0.22
VMP1-217ENST00000593168 FZD9O00144 591 aa16.4■□□□□ 0.22
VMP1-217ENST00000593168 IARSP41252 1262 aaKnown RBP16.4■□□□□ 0.22
VMP1-217ENST00000593168 RTKN2Q8IZC4 609 aa16.4■□□□□ 0.22
VMP1-217ENST00000593168 RASSF10A6NK89 507 aa16.39■□□□□ 0.21
VMP1-217ENST00000593168 TRIM6-TRIM34B2RNG4 842 aa16.39■□□□□ 0.21
VMP1-217ENST00000593168 PUM3Q15397 648 aaKnown RBP16.39■□□□□ 0.21
VMP1-217ENST00000593168 ATP2B3Q16720 1220 aa16.39■□□□□ 0.21
VMP1-217ENST00000593168 DEFB115Q30KQ5 88 aa16.39■□□□□ 0.21
VMP1-217ENST00000593168 TBC1D9Q6ZT07 1266 aa16.39■□□□□ 0.21
VMP1-217ENST00000593168 CNTROBQ8N137 903 aa16.39■□□□□ 0.21
VMP1-217ENST00000593168 CELF1Q92879 486 aaKnown RBP16.39■□□□□ 0.21
VMP1-217ENST00000593168 RBM19Q9Y4C8 960 aaKnown RBP16.39■□□□□ 0.21
VMP1-217ENST00000593168 HSPA8P11142 646 aaKnown RBP16.38■□□□□ 0.21
VMP1-217ENST00000593168 FGFR2P21802 821 aa16.38■□□□□ 0.21
VMP1-217ENST00000593168 HOXA10P31260 410 aaPredicted RBP16.38■□□□□ 0.21
VMP1-217ENST00000593168 PNMA8AQ86V59 439 aaPredicted RBP16.38■□□□□ 0.21
VMP1-217ENST00000593168 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.38■□□□□ 0.21
VMP1-217ENST00000593168 LPIN2Q92539 896 aa16.38■□□□□ 0.21
VMP1-217ENST00000593168 XAGE2Q96GT9 111 aa16.38■□□□□ 0.21
VMP1-217ENST00000593168 THSD7BQ9C0I4 1608 aa16.37■□□□□ 0.21
VMP1-217ENST00000593168 SEC24BO95487 1268 aa16.37■□□□□ 0.21
VMP1-217ENST00000593168 ALDH1B1P30837 517 aa16.37■□□□□ 0.21
VMP1-217ENST00000593168 CHRNDQ07001 517 aa16.37■□□□□ 0.21
VMP1-217ENST00000593168 GRAPQ13588 217 aa16.37■□□□□ 0.21
VMP1-217ENST00000593168 CCDC158Q5M9N0 1113 aa16.37■□□□□ 0.21
VMP1-217ENST00000593168 CASC1Q6TDU7 716 aa16.37■□□□□ 0.21
VMP1-217ENST00000593168 GPC2Q8N158 579 aa16.37■□□□□ 0.21
VMP1-217ENST00000593168 GRAPLQ8TC17 118 aaPredicted RBP16.37■□□□□ 0.21
VMP1-217ENST00000593168 RPGRQ92834 1020 aaKnown RBP16.37■□□□□ 0.21
VMP1-217ENST00000593168 RILPL2Q969X0 211 aa16.37■□□□□ 0.21
VMP1-217ENST00000593168 EVI5LQ96CN4 794 aa16.37■□□□□ 0.21
VMP1-217ENST00000593168 RBM17Q96I25 401 aaKnown RBP16.37■□□□□ 0.21
VMP1-217ENST00000593168 WDR33Q9C0J8 1336 aaKnown RBP16.37■□□□□ 0.21
VMP1-217ENST00000593168 TRPM7Q96QT4 1865 aa16.36■□□□□ 0.21
VMP1-217ENST00000593168 ZNF512BQ96KM6 892 aaPredicted RBP16.36■□□□□ 0.21
VMP1-217ENST00000593168 CRAMP1Q96RY5 1269 aa16.36■□□□□ 0.21
VMP1-217ENST00000593168 PSMD1Q99460 953 aa16.36■□□□□ 0.21
VMP1-217ENST00000593168 HAUS7Q99871 368 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms