RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 FAM177BA6PVY3 158 aa23.4■■□□□ 1.34
CLIP3-206ENST00000593074 HMGB1P09429 215 aaKnown RBP23.4■■□□□ 1.34
CLIP3-206ENST00000593074 FOXD4L6Q3SYB3 417 aaPredicted RBP23.4■■□□□ 1.34
CLIP3-206ENST00000593074 FOXD4L3Q6VB84 417 aaPredicted RBP23.4■■□□□ 1.34
CLIP3-206ENST00000593074 STOX1Q6ZVD7 989 aa23.4■■□□□ 1.34
CLIP3-206ENST00000593074 USP48Q86UV5 1035 aa23.4■■□□□ 1.34
CLIP3-206ENST00000593074 ZNF512BQ96KM6 892 aaPredicted RBP23.4■■□□□ 1.34
CLIP3-206ENST00000593074 NIP7Q9Y221 180 aaKnown RBP eCLIP23.4■■□□□ 1.34
CLIP3-206ENST00000593074 ZNF652Q9Y2D9 606 aa23.4■■□□□ 1.34
CLIP3-206ENST00000593074 M0R2C6 588 aa23.4■■□□□ 1.34
CLIP3-206ENST00000593074 HCLS1P14317 486 aaPredicted RBP23.4■■□□□ 1.34
CLIP3-206ENST00000593074 HSP90B1P14625 803 aaKnown RBP23.4■■□□□ 1.34
CLIP3-206ENST00000593074 LINC00116Q8NCU8 138 aa23.4■■□□□ 1.34
CLIP3-206ENST00000593074 CERKQ8TCT0 537 aa23.4■■□□□ 1.34
CLIP3-206ENST00000593074 ARAP2Q8WZ64 1704 aa23.4■■□□□ 1.34
CLIP3-206ENST00000593074 GDPD2Q9HCC8 539 aa23.4■■□□□ 1.34
CLIP3-206ENST00000593074 MYH7P12883 1935 aa23.4■■□□□ 1.34
CLIP3-206ENST00000593074 ZNF831Q5JPB2 1677 aa23.4■■□□□ 1.34
CLIP3-206ENST00000593074 AKAP11Q9UKA4 1901 aa23.39■■□□□ 1.34
CLIP3-206ENST00000593074 OSBP2Q969R2 916 aa23.39■■□□□ 1.34
CLIP3-206ENST00000593074 COL5A3P25940 1745 aaPredicted RBP23.39■■□□□ 1.33
CLIP3-206ENST00000593074 MYH14Q7Z406 1995 aaKnown RBP23.39■■□□□ 1.33
CLIP3-206ENST00000593074 PDCP20941 246 aa23.38■■□□□ 1.33
CLIP3-206ENST00000593074 ZAP70P43403 619 aa23.38■■□□□ 1.33
CLIP3-206ENST00000593074 MEX3CQ5U5Q3 659 aaKnown RBP23.38■■□□□ 1.33
CLIP3-206ENST00000593074 CNPY2Q9Y2B0 182 aa23.38■■□□□ 1.33
CLIP3-206ENST00000593074 LAMB2P55268 1798 aa23.38■■□□□ 1.33
CLIP3-206ENST00000593074 CLEC4GQ6UXB4 293 aa23.37■■□□□ 1.33
CLIP3-206ENST00000593074 Q6ZUG5 572 aa23.37■■□□□ 1.33
CLIP3-206ENST00000593074 GTF3C6Q969F1 213 aa23.37■■□□□ 1.33
CLIP3-206ENST00000593074 GADD45BO75293 160 aaPredicted RBP23.37■■□□□ 1.33
CLIP3-206ENST00000593074 PDE8BO95263 885 aa23.37■■□□□ 1.33
CLIP3-206ENST00000593074 FAM43AQ8N2R8 423 aa23.37■■□□□ 1.33
CLIP3-206ENST00000593074 DDX60Q8IY21 1712 aaKnown RBP23.37■■□□□ 1.33
CLIP3-206ENST00000593074 MCAMP43121 646 aa23.36■■□□□ 1.33
CLIP3-206ENST00000593074 NASPP49321 788 aaPredicted RBP23.36■■□□□ 1.33
CLIP3-206ENST00000593074 DHX32Q7L7V1 743 aaKnown RBP23.36■■□□□ 1.33
CLIP3-206ENST00000593074 PTF1AQ7RTS3 328 aa23.36■■□□□ 1.33
CLIP3-206ENST00000593074 BCORQ6W2J9 1755 aa23.36■■□□□ 1.33
CLIP3-206ENST00000593074 DTNBO60941 627 aa23.36■■□□□ 1.33
CLIP3-206ENST00000593074 NTSR2O95665 410 aa23.36■■□□□ 1.33
CLIP3-206ENST00000593074 LRSAM1Q6UWE0 723 aa23.36■■□□□ 1.33
CLIP3-206ENST00000593074 APPBP2Q92624 585 aa23.36■■□□□ 1.33
CLIP3-206ENST00000593074 SYAP1Q96A49 352 aaPredicted RBP23.36■■□□□ 1.33
CLIP3-206ENST00000593074 VPS37CA5D8V6 355 aaPredicted RBP23.35■■□□□ 1.33
CLIP3-206ENST00000593074 KCNQ4P56696 695 aa23.35■■□□□ 1.33
CLIP3-206ENST00000593074 LARP1BQ659C4 914 aaKnown RBP23.35■■□□□ 1.33
CLIP3-206ENST00000593074 PI16Q6UXB8 463 aa23.35■■□□□ 1.33
CLIP3-206ENST00000593074 GJD4Q96KN9 370 aaPredicted RBP23.35■■□□□ 1.33
CLIP3-206ENST00000593074 AGXT2Q9BYV1 514 aa23.35■■□□□ 1.33
CLIP3-206ENST00000593074 RTN4Q9NQC3 1192 aaKnown RBP23.35■■□□□ 1.33
CLIP3-206ENST00000593074 MROH5Q6ZUA9 1318 aa23.35■■□□□ 1.33
CLIP3-206ENST00000593074 CNTNAP4Q9C0A0 1308 aa23.35■■□□□ 1.33
CLIP3-206ENST00000593074 FOXP2O15409 715 aa23.34■■□□□ 1.33
CLIP3-206ENST00000593074 CCDC152Q4G0S7 254 aa23.34■■□□□ 1.33
CLIP3-206ENST00000593074 ATRNO75882 1429 aa23.34■■□□□ 1.33
CLIP3-206ENST00000593074 E7EWF7 191 aa23.34■■□□□ 1.33
CLIP3-206ENST00000593074 EXOSC10Q01780 885 aaKnown RBP23.34■■□□□ 1.33
CLIP3-206ENST00000593074 STK3Q13188 491 aa23.34■■□□□ 1.33
CLIP3-206ENST00000593074 SYCE3A1L190 88 aa23.33■■□□□ 1.33
CLIP3-206ENST00000593074 ARID4AP29374 1257 aaPredicted RBP23.33■■□□□ 1.33
CLIP3-206ENST00000593074 PUM3Q15397 648 aaKnown RBP23.33■■□□□ 1.33
CLIP3-206ENST00000593074 RC3H1Q5TC82 1133 aaKnown RBP23.33■■□□□ 1.33
CLIP3-206ENST00000593074 RTL9Q8NET4 1388 aa23.33■■□□□ 1.32
CLIP3-206ENST00000593074 FGFR2P21802 821 aa23.32■■□□□ 1.32
CLIP3-206ENST00000593074 UBE2HP62256 183 aa23.32■■□□□ 1.32
CLIP3-206ENST00000593074 CSPP1Q1MSJ5 1256 aa23.32■■□□□ 1.32
CLIP3-206ENST00000593074 WASHC4Q2M389 1173 aa23.32■■□□□ 1.32
CLIP3-206ENST00000593074 CDC37L1Q7L3B6 337 aa23.32■■□□□ 1.32
CLIP3-206ENST00000593074 BRF1Q92994 677 aa23.32■■□□□ 1.32
CLIP3-206ENST00000593074 MPHOSPH8Q99549 860 aa23.32■■□□□ 1.32
CLIP3-206ENST00000593074 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.32■■□□□ 1.32
CLIP3-206ENST00000593074 A0A0G2JLW4 131 aa23.32■■□□□ 1.32
CLIP3-206ENST00000593074 DNM1Q05193 864 aaKnown RBP23.32■■□□□ 1.32
CLIP3-206ENST00000593074 CTNNA3Q9UI47 895 aa23.32■■□□□ 1.32
CLIP3-206ENST00000593074 HSPA1LP34931 641 aa23.31■■□□□ 1.32
CLIP3-206ENST00000593074 TTF1Q15361 905 aaPredicted RBP23.31■■□□□ 1.32
CLIP3-206ENST00000593074 LPIN2Q92539 896 aa23.31■■□□□ 1.32
CLIP3-206ENST00000593074 RBSNQ9H1K0 784 aa23.31■■□□□ 1.32
CLIP3-206ENST00000593074 RGL2O15211 777 aa23.31■■□□□ 1.32
CLIP3-206ENST00000593074 FIBPO43427 364 aa23.31■■□□□ 1.32
CLIP3-206ENST00000593074 PFKFB2O60825 505 aa23.31■■□□□ 1.32
CLIP3-206ENST00000593074 FAM182BQ5T319 152 aa23.31■■□□□ 1.32
CLIP3-206ENST00000593074 LRRC2Q9BYS8 371 aa23.31■■□□□ 1.32
CLIP3-206ENST00000593074 PUS7LQ9H0K6 701 aaKnown RBP23.31■■□□□ 1.32
CLIP3-206ENST00000593074 SEC31BQ9NQW1 1179 aa23.31■■□□□ 1.32
CLIP3-206ENST00000593074 THSD7AQ9UPZ6 1657 aa23.3■■□□□ 1.32
CLIP3-206ENST00000593074 CCDC102BQ68D86 513 aa23.3■■□□□ 1.32
CLIP3-206ENST00000593074 ZSCAN25Q6NSZ9 544 aa23.3■■□□□ 1.32
CLIP3-206ENST00000593074 AFF2P51816 1311 aa23.3■■□□□ 1.32
CLIP3-206ENST00000593074 RPS6KA4O75676 772 aa23.29■■□□□ 1.32
CLIP3-206ENST00000593074 PHF14O94880 888 aa23.29■■□□□ 1.32
CLIP3-206ENST00000593074 UQCRFS1P1P0C7P4 283 aa23.29■■□□□ 1.32
CLIP3-206ENST00000593074 TTLL5Q6EMB2 1281 aa23.29■■□□□ 1.32
CLIP3-206ENST00000593074 FBXL16Q8N461 479 aa23.29■■□□□ 1.32
CLIP3-206ENST00000593074 HELBQ8NG08 1087 aaPredicted RBP23.29■■□□□ 1.32
CLIP3-206ENST00000593074 LLPHQ9BRT6 129 aaKnown RBP23.29■■□□□ 1.32
CLIP3-206ENST00000593074 ADD2P35612 726 aa23.29■■□□□ 1.32
CLIP3-206ENST00000593074 IGHMBP2P38935 993 aaKnown RBP23.29■■□□□ 1.32
CLIP3-206ENST00000593074 PHKA1P46020 1223 aa23.29■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms