RNA–Protein interactions for RNA: ENST00000592017.5

CLIP3-205, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 5

Gene CLIP3, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-205ENST00000592017 MYH3P11055 1940 aa17.53■□□□□ 0.4
CLIP3-205ENST00000592017 MED23Q9ULK4 1368 aa17.53■□□□□ 0.4
CLIP3-205ENST00000592017 ZNF804BA4D1E1 1349 aa17.52■□□□□ 0.4
CLIP3-205ENST00000592017 SNAP23O00161 211 aa17.52■□□□□ 0.4
CLIP3-205ENST00000592017 ZNF280AP59817 542 aaPredicted RBP17.52■□□□□ 0.4
CLIP3-205ENST00000592017 CHRNDQ07001 517 aa17.52■□□□□ 0.4
CLIP3-205ENST00000592017 CDC37L1Q7L3B6 337 aa17.52■□□□□ 0.4
CLIP3-205ENST00000592017 KAZALD1Q96I82 304 aa17.52■□□□□ 0.4
CLIP3-205ENST00000592017 UTYO14607 1347 aa17.51■□□□□ 0.39
CLIP3-205ENST00000592017 USP17L3A6NCW0 530 aa17.51■□□□□ 0.39
CLIP3-205ENST00000592017 USP17L4A6NCW7 530 aa17.51■□□□□ 0.39
CLIP3-205ENST00000592017 CELF2O95319 508 aaKnown RBP17.51■□□□□ 0.39
CLIP3-205ENST00000592017 CCDC57Q2TAC2 916 aa17.51■□□□□ 0.39
CLIP3-205ENST00000592017 COL13A1Q5TAT6 717 aaPredicted RBP17.51■□□□□ 0.39
CLIP3-205ENST00000592017 USP17L1Q7RTZ2 530 aa17.51■□□□□ 0.39
CLIP3-205ENST00000592017 AGBL3Q8NEM8 1001 aa17.51■□□□□ 0.39
CLIP3-205ENST00000592017 HELBQ8NG08 1087 aaPredicted RBP17.51■□□□□ 0.39
CLIP3-205ENST00000592017 ZNF594Q96JF6 807 aaPredicted RBP17.51■□□□□ 0.39
CLIP3-205ENST00000592017 MXD3Q9BW11 206 aa17.51■□□□□ 0.39
CLIP3-205ENST00000592017 BICC1Q9H694 974 aaKnown RBP17.51■□□□□ 0.39
CLIP3-205ENST00000592017 ASTN2O75129 1339 aaPredicted RBP17.5■□□□□ 0.39
CLIP3-205ENST00000592017 SPEF2Q9C093 1822 aa17.5■□□□□ 0.39
CLIP3-205ENST00000592017 TAF5LO75529 589 aa17.5■□□□□ 0.39
CLIP3-205ENST00000592017 KIF4BQ2VIQ3 1234 aa17.5■□□□□ 0.39
CLIP3-205ENST00000592017 DACT2Q5SW24 774 aa17.5■□□□□ 0.39
CLIP3-205ENST00000592017 IFFO2Q5TF58 517 aa17.5■□□□□ 0.39
CLIP3-205ENST00000592017 COA1Q9GZY4 146 aa17.5■□□□□ 0.39
CLIP3-205ENST00000592017 USP44Q9H0E7 712 aa17.5■□□□□ 0.39
CLIP3-205ENST00000592017 IPO8O15397 1037 aaKnown RBP17.49■□□□□ 0.39
CLIP3-205ENST00000592017 USP17L8P0C7I0 530 aa17.49■□□□□ 0.39
CLIP3-205ENST00000592017 ARHGAP45Q92619 1136 aa17.49■□□□□ 0.39
CLIP3-205ENST00000592017 TNNQ9UQP3 1299 aa17.49■□□□□ 0.39
CLIP3-205ENST00000592017 TLL2Q9Y6L7 1015 aa17.49■□□□□ 0.39
CLIP3-205ENST00000592017 SCN9AQ15858 1988 aa17.49■□□□□ 0.39
CLIP3-205ENST00000592017 WDR33Q9C0J8 1336 aaKnown RBP17.48■□□□□ 0.39
CLIP3-205ENST00000592017 IRS2Q9Y4H2 1338 aa17.48■□□□□ 0.39
CLIP3-205ENST00000592017 ZNF609O15014 1411 aa17.48■□□□□ 0.39
CLIP3-205ENST00000592017 UBTFL1P0CB47 393 aaPredicted RBP17.48■□□□□ 0.39
CLIP3-205ENST00000592017 TRIM27P14373 513 aa17.48■□□□□ 0.39
CLIP3-205ENST00000592017 ATF7IPQ6VMQ6 1270 aa17.48■□□□□ 0.39
CLIP3-205ENST00000592017 KRT26Q7Z3Y9 468 aa17.48■□□□□ 0.39
CLIP3-205ENST00000592017 CLUAP1Q96AJ1 413 aa17.48■□□□□ 0.39
CLIP3-205ENST00000592017 ZNF408Q9H9D4 720 aa17.48■□□□□ 0.39
CLIP3-205ENST00000592017 ADM5C9JUS6 153 aa17.47■□□□□ 0.39
CLIP3-205ENST00000592017 KCNJ4P48050 445 aa17.47■□□□□ 0.39
CLIP3-205ENST00000592017 STRIP1Q5VSL9 837 aa17.47■□□□□ 0.39
CLIP3-205ENST00000592017 CYP4F22Q6NT55 531 aa17.47■□□□□ 0.39
CLIP3-205ENST00000592017 LDHAL6AQ6ZMR3 332 aa17.47■□□□□ 0.39
CLIP3-205ENST00000592017 SAPCD2Q86UD0 394 aa17.47■□□□□ 0.39
CLIP3-205ENST00000592017 ANKRD44Q8N8A2 993 aa17.47■□□□□ 0.39
CLIP3-205ENST00000592017 CAPNS2Q96L46 248 aa17.47■□□□□ 0.39
CLIP3-205ENST00000592017 CNNM1Q9NRU3 951 aa17.47■□□□□ 0.39
CLIP3-205ENST00000592017 SCARF1Q14162 830 aa17.46■□□□□ 0.39
CLIP3-205ENST00000592017 RABL6Q3YEC7 729 aaPredicted RBP17.46■□□□□ 0.39
CLIP3-205ENST00000592017 ZKSCAN2Q63HK3 967 aa17.46■□□□□ 0.39
CLIP3-205ENST00000592017 C15orf52Q6ZUT6 534 aaKnown RBP17.46■□□□□ 0.39
CLIP3-205ENST00000592017 DCPSQ96C86 337 aaKnown RBP17.46■□□□□ 0.39
CLIP3-205ENST00000592017 MYOZ2Q9NPC6 264 aa17.46■□□□□ 0.39
CLIP3-205ENST00000592017 WBP1LQ9NX94 342 aa17.46■□□□□ 0.39
CLIP3-205ENST00000592017 GGA3Q9NZ52 723 aa17.46■□□□□ 0.39
CLIP3-205ENST00000592017 FOXN1O15353 648 aa17.45■□□□□ 0.38
CLIP3-205ENST00000592017 TTLL5Q6EMB2 1281 aa17.45■□□□□ 0.38
CLIP3-205ENST00000592017 FBXW7Q969H0 707 aa17.45■□□□□ 0.38
CLIP3-205ENST00000592017 MEIS3Q99687 375 aa17.45■□□□□ 0.38
CLIP3-205ENST00000592017 PUS3Q9BZE2 481 aaKnown RBP17.45■□□□□ 0.38
CLIP3-205ENST00000592017 CD209Q9NNX6 404 aa17.45■□□□□ 0.38
CLIP3-205ENST00000592017 PLIN1O60240 522 aa17.44■□□□□ 0.38
CLIP3-205ENST00000592017 GTF2IP78347 998 aa17.44■□□□□ 0.38
CLIP3-205ENST00000592017 GRM1Q13255 1194 aa17.44■□□□□ 0.38
CLIP3-205ENST00000592017 ANGEL2Q5VTE6 544 aaKnown RBP17.44■□□□□ 0.38
CLIP3-205ENST00000592017 INTS3Q68E01 1043 aaKnown RBP17.44■□□□□ 0.38
CLIP3-205ENST00000592017 PAXIP1Q6ZW49 1069 aaPredicted RBP17.44■□□□□ 0.38
CLIP3-205ENST00000592017 ECE1P42892 770 aa17.43■□□□□ 0.38
CLIP3-205ENST00000592017 SULF1Q8IWU6 871 aa17.43■□□□□ 0.38
CLIP3-205ENST00000592017 FTSJ3Q8IY81 847 aaKnown RBP17.43■□□□□ 0.38
CLIP3-205ENST00000592017 RIPOR2Q9Y4F9 1068 aa17.43■□□□□ 0.38
CLIP3-205ENST00000592017 LRRFIP2Q9Y608 721 aaKnown RBP17.43■□□□□ 0.38
CLIP3-205ENST00000592017 AOC2O75106 756 aa17.42■□□□□ 0.38
CLIP3-205ENST00000592017 NBPF9Q3BBW0 867 aa17.42■□□□□ 0.38
CLIP3-205ENST00000592017 TMEM57Q8N5G2 664 aa17.42■□□□□ 0.38
CLIP3-205ENST00000592017 KLHDC4Q8TBB5 520 aa17.42■□□□□ 0.38
CLIP3-205ENST00000592017 HHIPL1Q96JK4 782 aa17.42■□□□□ 0.38
CLIP3-205ENST00000592017 YTHDC1Q96MU7 727 aaKnown RBP17.42■□□□□ 0.38
CLIP3-205ENST00000592017 IL1R1P14778 569 aa17.41■□□□□ 0.38
CLIP3-205ENST00000592017 KIAA0825Q8IV33 1275 aa17.41■□□□□ 0.38
CLIP3-205ENST00000592017 OGFOD1Q8N543 542 aa17.41■□□□□ 0.38
CLIP3-205ENST00000592017 CERS5Q8N5B7 392 aa17.41■□□□□ 0.38
CLIP3-205ENST00000592017 SCAF8Q9UPN6 1271 aaKnown RBP17.41■□□□□ 0.38
CLIP3-205ENST00000592017 HDAC5Q9UQL6 1122 aa17.41■□□□□ 0.38
CLIP3-205ENST00000592017 MYO3BQ8WXR4 1341 aa17.41■□□□□ 0.38
CLIP3-205ENST00000592017 GNAI3P08754 354 aa17.4■□□□□ 0.38
CLIP3-205ENST00000592017 HUNKP57058 714 aa17.4■□□□□ 0.38
CLIP3-205ENST00000592017 MAP2K1Q02750 393 aaPredicted RBP17.4■□□□□ 0.38
CLIP3-205ENST00000592017 AIDAQ96BJ3 306 aa17.4■□□□□ 0.38
CLIP3-205ENST00000592017 CDCA5Q96FF9 252 aa17.4■□□□□ 0.38
CLIP3-205ENST00000592017 GBA2Q9HCG7 927 aaPredicted RBP17.4■□□□□ 0.38
CLIP3-205ENST00000592017 WNT10BO00744 389 aa17.39■□□□□ 0.37
CLIP3-205ENST00000592017 MAP2K2P36507 400 aa17.39■□□□□ 0.37
CLIP3-205ENST00000592017 CTCFP49711 727 aaPredicted RBP17.39■□□□□ 0.37
CLIP3-205ENST00000592017 LRRC24Q50LG9 513 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms