RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 MYOZ2Q9NPC6 264 aa15.09■□□□□ 0.01
CLIP3-204ENST00000590559 SAGE1Q9NXZ1 904 aa15.09■□□□□ 0.01
CLIP3-204ENST00000590559 SLC4A2P04920 1241 aa15.08■□□□□ 0
CLIP3-204ENST00000590559 CSF1RP07333 972 aa15.08■□□□□ 0
CLIP3-204ENST00000590559 USP17L8P0C7I0 530 aa15.08■□□□□ 0
CLIP3-204ENST00000590559 CCT4P50991 539 aaKnown RBP15.08■□□□□ 0
CLIP3-204ENST00000590559 KIF23Q02241 960 aaPredicted RBP15.08■□□□□ 0
CLIP3-204ENST00000590559 NEXNQ0ZGT2 675 aa15.08■□□□□ 0
CLIP3-204ENST00000590559 GCKRQ14397 625 aa15.08■□□□□ 0
CLIP3-204ENST00000590559 DACT2Q5SW24 774 aa15.08■□□□□ 0
CLIP3-204ENST00000590559 STK31Q9BXU1 1019 aa15.08■□□□□ 0
CLIP3-204ENST00000590559 MCOLN1Q9GZU1 580 aa15.08■□□□□ 0
CLIP3-204ENST00000590559 G3V3G9 751 aa15.07■□□□□ 0
CLIP3-204ENST00000590559 ZNF157P51786 506 aaPredicted RBP15.07■□□□□ 0
CLIP3-204ENST00000590559 DCAF8Q5TAQ9 597 aa15.07■□□□□ 0
CLIP3-204ENST00000590559 TXNRD3Q86VQ6 643 aa15.07■□□□□ 0
CLIP3-204ENST00000590559 ECM29Q5VYK3 1845 aa15.06■□□□□ 0
CLIP3-204ENST00000590559 FKBP1BP68106 108 aa15.06■□□□□ 0
CLIP3-204ENST00000590559 FLIIQ13045 1269 aa15.06■□□□□ 0
CLIP3-204ENST00000590559 UBE3BQ7Z3V4 1068 aa15.06■□□□□ 0
CLIP3-204ENST00000590559 CSRNP1Q96S65 589 aa15.06■□□□□ 0
CLIP3-204ENST00000590559 RNF186Q9NXI6 227 aa15.06■□□□□ 0
CLIP3-204ENST00000590559 LEMD3Q9Y2U8 911 aa15.06■□□□□ 0
CLIP3-204ENST00000590559 IRS2Q9Y4H2 1338 aa15.06■□□□□ 0
CLIP3-204ENST00000590559 LAMB1P07942 1786 aa15.06■□□□□ 0
CLIP3-204ENST00000590559 HTTP42858 3142 aa15.05■□□□□ -0
CLIP3-204ENST00000590559 NBPF9Q3BBW0 867 aa15.05■□□□□ -0
CLIP3-204ENST00000590559 STRIP1Q5VSL9 837 aa15.05■□□□□ -0
CLIP3-204ENST00000590559 RASAL3Q86YV0 1011 aa15.05■□□□□ -0
CLIP3-204ENST00000590559 MXD3Q9BW11 206 aa15.05■□□□□ -0
CLIP3-204ENST00000590559 COA1Q9GZY4 146 aa15.05■□□□□ -0
CLIP3-204ENST00000590559 FANCIQ9NVI1 1328 aa15.05■□□□□ -0
CLIP3-204ENST00000590559 MYO3BQ8WXR4 1341 aa15.04■□□□□ -0
CLIP3-204ENST00000590559 CCDC85CA6NKD9 419 aa15.04■□□□□ -0
CLIP3-204ENST00000590559 WNT10BO00744 389 aa15.04■□□□□ -0
CLIP3-204ENST00000590559 VAMP4O75379 141 aa15.04■□□□□ -0
CLIP3-204ENST00000590559 ITGA6P23229 1130 aa15.04■□□□□ -0
CLIP3-204ENST00000590559 MMP14P50281 582 aa15.04■□□□□ -0
CLIP3-204ENST00000590559 FAM161AQ3B820 660 aa15.04■□□□□ -0
CLIP3-204ENST00000590559 LINS1Q8NG48 757 aa15.04■□□□□ -0
CLIP3-204ENST00000590559 DNAAF4Q8WXU2 420 aa15.04■□□□□ -0
CLIP3-204ENST00000590559 ZBED3Q96IU2 234 aaPredicted RBP15.04■□□□□ -0
CLIP3-204ENST00000590559 ZNF804BA4D1E1 1349 aa15.03■□□□□ -0
CLIP3-204ENST00000590559 KLRK1P26718 216 aa15.03■□□□□ -0
CLIP3-204ENST00000590559 DGKZQ13574 1117 aa15.03■□□□□ -0
CLIP3-204ENST00000590559 REM2Q8IYK8 340 aaPredicted RBP15.03■□□□□ -0
CLIP3-204ENST00000590559 CENPFP49454 3210 aa15.02■□□□□ -0
CLIP3-204ENST00000590559 TRPA1O75762 1119 aa15.02■□□□□ -0
CLIP3-204ENST00000590559 IGHMBP2P38935 993 aaKnown RBP15.02■□□□□ -0
CLIP3-204ENST00000590559 WDR63Q8IWG1 891 aa15.02■□□□□ -0
CLIP3-204ENST00000590559 ANKRD2Q9GZV1 360 aa15.02■□□□□ -0
CLIP3-204ENST00000590559 SCAF8Q9UPN6 1271 aaKnown RBP15.02■□□□□ -0
CLIP3-204ENST00000590559 FOXO4P98177 505 aa15.01□□□□□ -0.01
CLIP3-204ENST00000590559 FKBP5Q13451 457 aaPredicted RBP15.01□□□□□ -0.01
CLIP3-204ENST00000590559 C15orf52Q6ZUT6 534 aaKnown RBP15.01□□□□□ -0.01
CLIP3-204ENST00000590559 MOB2Q70IA6 237 aa15.01□□□□□ -0.01
CLIP3-204ENST00000590559 MYH16Q9H6N6 1097 aa15.01□□□□□ -0.01
CLIP3-204ENST00000590559 MLLT1Q03111 559 aaPredicted RBP15□□□□□ -0.01
CLIP3-204ENST00000590559 CHRNDQ07001 517 aa15□□□□□ -0.01
CLIP3-204ENST00000590559 BEND3Q5T5X7 828 aa15□□□□□ -0.01
CLIP3-204ENST00000590559 PRAMEF18Q5VWM3 479 aa15□□□□□ -0.01
CLIP3-204ENST00000590559 TTLL5Q6EMB2 1281 aa15□□□□□ -0.01
CLIP3-204ENST00000590559 SPINK5Q9NQ38 1064 aaPredicted RBP15□□□□□ -0.01
CLIP3-204ENST00000590559 EXOSC9Q06265 439 aaKnown RBP14.99□□□□□ -0.01
CLIP3-204ENST00000590559 OGFOD1Q8N543 542 aa14.99□□□□□ -0.01
CLIP3-204ENST00000590559 MPHOSPH8Q99549 860 aa14.99□□□□□ -0.01
CLIP3-204ENST00000590559 CD209Q9NNX6 404 aa14.99□□□□□ -0.01
CLIP3-204ENST00000590559 COL1A1P02452 1464 aaPredicted RBP14.98□□□□□ -0.01
CLIP3-204ENST00000590559 UBE2Q2LH0YL09 131 aa14.98□□□□□ -0.01
CLIP3-204ENST00000590559 SNAP23O00161 211 aa14.98□□□□□ -0.01
CLIP3-204ENST00000590559 TM4SF4P48230 202 aa14.98□□□□□ -0.01
CLIP3-204ENST00000590559 CERS5Q8N5B7 392 aa14.98□□□□□ -0.01
CLIP3-204ENST00000590559 MTMR14Q8NCE2 650 aa14.98□□□□□ -0.01
CLIP3-204ENST00000590559 ARAP2Q8WZ64 1704 aa14.97□□□□□ -0.01
CLIP3-204ENST00000590559 ANKRD18BA2A2Z9 1011 aa14.97□□□□□ -0.01
CLIP3-204ENST00000590559 SASH1O94885 1247 aa14.97□□□□□ -0.01
CLIP3-204ENST00000590559 IL1R1P14778 569 aa14.97□□□□□ -0.01
CLIP3-204ENST00000590559 GTF2IP78347 998 aa14.97□□□□□ -0.01
CLIP3-204ENST00000590559 EPHA10Q5JZY3 1008 aa14.97□□□□□ -0.01
CLIP3-204ENST00000590559 KIAA0825Q8IV33 1275 aa14.97□□□□□ -0.01
CLIP3-204ENST00000590559 MRS2Q9HD23 443 aa14.97□□□□□ -0.01
CLIP3-204ENST00000590559 MKI67P46013 3256 aaKnown RBP14.97□□□□□ -0.01
CLIP3-204ENST00000590559 BRCA2P51587 3418 aa14.96□□□□□ -0.01
CLIP3-204ENST00000590559 SSC5DA1L4H1 1573 aa14.96□□□□□ -0.01
CLIP3-204ENST00000590559 F6X3S4 739 aa14.96□□□□□ -0.01
CLIP3-204ENST00000590559 TAF5LO75529 589 aa14.96□□□□□ -0.01
CLIP3-204ENST00000590559 NOM1Q5C9Z4 860 aaKnown RBP14.96□□□□□ -0.01
CLIP3-204ENST00000590559 LDLRAD1Q5T700 205 aa14.96□□□□□ -0.01
CLIP3-204ENST00000590559 CFHR5Q9BXR6 569 aa14.96□□□□□ -0.01
CLIP3-204ENST00000590559 FKBP1AP62942 108 aaKnown RBP14.95□□□□□ -0.02
CLIP3-204ENST00000590559 PTPN12Q05209 780 aaKnown RBP14.95□□□□□ -0.02
CLIP3-204ENST00000590559 CTU1Q7Z7A3 348 aaKnown RBP14.95□□□□□ -0.02
CLIP3-204ENST00000590559 APOBEC3FQ8IUX4 373 aaKnown RBP14.95□□□□□ -0.02
CLIP3-204ENST00000590559 FBXW7Q969H0 707 aa14.95□□□□□ -0.02
CLIP3-204ENST00000590559 HDAC9Q9UKV0 1011 aa14.95□□□□□ -0.02
CLIP3-204ENST00000590559 IFIT5Q13325 482 aaKnown RBP14.94□□□□□ -0.02
CLIP3-204ENST00000590559 MAP3K11Q16584 847 aa14.94□□□□□ -0.02
CLIP3-204ENST00000590559 LMBR1LQ6UX01 489 aa14.94□□□□□ -0.02
CLIP3-204ENST00000590559 HELBQ8NG08 1087 aaPredicted RBP14.94□□□□□ -0.02
CLIP3-204ENST00000590559 PCDHAC2Q9Y5I4 1007 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms