RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 FAM155AB1AL88 458 aaPredicted RBP13.28□□□□□ -0.28
LIG3-212ENST00000590181 G3V3G9 751 aa13.28□□□□□ -0.28
LIG3-212ENST00000590181 PSMD14O00487 310 aa13.28□□□□□ -0.28
LIG3-212ENST00000590181 TBC1D10BQ4KMP7 808 aaPredicted RBP13.28□□□□□ -0.28
LIG3-212ENST00000590181 DCAF8Q5TAQ9 597 aa13.28□□□□□ -0.28
LIG3-212ENST00000590181 RGMBQ6NW40 437 aa13.28□□□□□ -0.28
LIG3-212ENST00000590181 SAMD7Q7Z3H4 446 aa13.28□□□□□ -0.28
LIG3-212ENST00000590181 PODNQ7Z5L7 613 aa13.28□□□□□ -0.28
LIG3-212ENST00000590181 SRCIN1Q9C0H9 1055 aa13.28□□□□□ -0.28
LIG3-212ENST00000590181 DBNDD1Q9H9R9 158 aa13.28□□□□□ -0.28
LIG3-212ENST00000590181 LEMD3Q9Y2U8 911 aa13.28□□□□□ -0.28
LIG3-212ENST00000590181 EGFRP00533 1210 aa13.27□□□□□ -0.29
LIG3-212ENST00000590181 CASP7P55210 303 aa13.27□□□□□ -0.29
LIG3-212ENST00000590181 GPSM2P81274 684 aa13.27□□□□□ -0.29
LIG3-212ENST00000590181 MPHOSPH8Q99549 860 aa13.27□□□□□ -0.29
LIG3-212ENST00000590181 SEC31BQ9NQW1 1179 aa13.27□□□□□ -0.29
LIG3-212ENST00000590181 C9orf78Q9NZ63 289 aaPredicted RBP13.27□□□□□ -0.29
LIG3-212ENST00000590181 POLLQ9UGP5 575 aa13.27□□□□□ -0.29
LIG3-212ENST00000590181 ANKRD18BA2A2Z9 1011 aa13.26□□□□□ -0.29
LIG3-212ENST00000590181 GRM8O00222 908 aa13.26□□□□□ -0.29
LIG3-212ENST00000590181 ECE2O60344 883 aa13.26□□□□□ -0.29
LIG3-212ENST00000590181 ZNF157P51786 506 aaPredicted RBP13.26□□□□□ -0.29
LIG3-212ENST00000590181 KIF23Q02241 960 aaPredicted RBP13.26□□□□□ -0.29
LIG3-212ENST00000590181 IFIT5Q13325 482 aaKnown RBP13.26□□□□□ -0.29
LIG3-212ENST00000590181 C2orf69Q8N8R5 385 aa13.26□□□□□ -0.29
LIG3-212ENST00000590181 DCPSQ96C86 337 aaKnown RBP13.26□□□□□ -0.29
LIG3-212ENST00000590181 GGA3Q9NZ52 723 aa13.26□□□□□ -0.29
LIG3-212ENST00000590181 ZNF609O15014 1411 aa13.25□□□□□ -0.29
LIG3-212ENST00000590181 UTYO14607 1347 aa13.25□□□□□ -0.29
LIG3-212ENST00000590181 RIMBP2O15034 1052 aa13.25□□□□□ -0.29
LIG3-212ENST00000590181 UFL1O94874 794 aa13.25□□□□□ -0.29
LIG3-212ENST00000590181 SLC10A3P09131 477 aa13.25□□□□□ -0.29
LIG3-212ENST00000590181 ITGA6P23229 1130 aa13.25□□□□□ -0.29
LIG3-212ENST00000590181 KIF4BQ2VIQ3 1234 aa13.25□□□□□ -0.29
LIG3-212ENST00000590181 DIEXFQ68CQ4 756 aaKnown RBP13.25□□□□□ -0.29
LIG3-212ENST00000590181 AGBL3Q8NEM8 1001 aa13.25□□□□□ -0.29
LIG3-212ENST00000590181 CCDC102AQ96A19 550 aa13.25□□□□□ -0.29
LIG3-212ENST00000590181 GREM2Q9H772 168 aa13.25□□□□□ -0.29
LIG3-212ENST00000590181 MINPP1Q9UNW1 487 aa13.25□□□□□ -0.29
LIG3-212ENST00000590181 MED23Q9ULK4 1368 aa13.24□□□□□ -0.29
LIG3-212ENST00000590181 TRPA1O75762 1119 aa13.24□□□□□ -0.29
LIG3-212ENST00000590181 VIL1P09327 827 aaKnown RBP13.24□□□□□ -0.29
LIG3-212ENST00000590181 CCDC57Q2TAC2 916 aa13.24□□□□□ -0.29
LIG3-212ENST00000590181 RBM26Q5T8P6 1007 aaKnown RBP13.24□□□□□ -0.29
LIG3-212ENST00000590181 MRPL50Q8N5N7 158 aaKnown RBP13.24□□□□□ -0.29
LIG3-212ENST00000590181 ARHGAP45Q92619 1136 aa13.24□□□□□ -0.29
LIG3-212ENST00000590181 RNF186Q9NXI6 227 aa13.24□□□□□ -0.29
LIG3-212ENST00000590181 MYO3BQ8WXR4 1341 aa13.23□□□□□ -0.29
LIG3-212ENST00000590181 CCT4P50991 539 aaKnown RBP13.23□□□□□ -0.29
LIG3-212ENST00000590181 DOK7Q18PE1 504 aa13.23□□□□□ -0.29
LIG3-212ENST00000590181 CTU1Q7Z7A3 348 aaKnown RBP13.23□□□□□ -0.29
LIG3-212ENST00000590181 SULF1Q8IWU6 871 aa13.23□□□□□ -0.29
LIG3-212ENST00000590181 CDCA5Q96FF9 252 aa13.23□□□□□ -0.29
LIG3-212ENST00000590181 COA1Q9GZY4 146 aa13.23□□□□□ -0.29
LIG3-212ENST00000590181 ASTN2O75129 1339 aaPredicted RBP13.22□□□□□ -0.29
LIG3-212ENST00000590181 F6X3S4 739 aa13.22□□□□□ -0.29
LIG3-212ENST00000590181 FOXO4P98177 505 aa13.22□□□□□ -0.29
LIG3-212ENST00000590181 PRPF38BQ5VTL8 546 aaKnown RBP13.22□□□□□ -0.29
LIG3-212ENST00000590181 SLC4A10Q6U841 1118 aa13.22□□□□□ -0.29
LIG3-212ENST00000590181 C15orf52Q6ZUT6 534 aaKnown RBP13.22□□□□□ -0.29
LIG3-212ENST00000590181 RASAL3Q86YV0 1011 aa13.22□□□□□ -0.29
LIG3-212ENST00000590181 USP17L3A6NCW0 530 aa13.21□□□□□ -0.29
LIG3-212ENST00000590181 USP17L4A6NCW7 530 aa13.21□□□□□ -0.29
LIG3-212ENST00000590181 IPO8O15397 1037 aaKnown RBP13.21□□□□□ -0.29
LIG3-212ENST00000590181 USP17L1Q7RTZ2 530 aa13.21□□□□□ -0.29
LIG3-212ENST00000590181 SSH1Q8WYL5 1049 aa13.21□□□□□ -0.29
LIG3-212ENST00000590181 JARID2Q92833 1246 aaPredicted RBP13.21□□□□□ -0.29
LIG3-212ENST00000590181 API5Q9BZZ5 524 aaKnown RBP13.21□□□□□ -0.29
LIG3-212ENST00000590181 KCNQ5Q9NR82 932 aa13.21□□□□□ -0.29
LIG3-212ENST00000590181 LAMB1P07942 1786 aa13.21□□□□□ -0.29
LIG3-212ENST00000590181 ZNF804BA4D1E1 1349 aa13.2□□□□□ -0.3
LIG3-212ENST00000590181 KIF16BQ96L93 1317 aa13.2□□□□□ -0.3
LIG3-212ENST00000590181 STRIP1Q5VSL9 837 aa13.2□□□□□ -0.3
LIG3-212ENST00000590181 LMBR1LQ6UX01 489 aa13.2□□□□□ -0.3
LIG3-212ENST00000590181 SMC4Q9NTJ3 1288 aa13.2□□□□□ -0.3
LIG3-212ENST00000590181 HTTP42858 3142 aa13.2□□□□□ -0.3
LIG3-212ENST00000590181 RBBP6Q7Z6E9 1792 aaKnown RBP13.2□□□□□ -0.3
LIG3-212ENST00000590181 ECM29Q5VYK3 1845 aa13.19□□□□□ -0.3
LIG3-212ENST00000590181 KCNJ4P48050 445 aa13.19□□□□□ -0.3
LIG3-212ENST00000590181 TAF7LQ5H9L4 462 aa13.19□□□□□ -0.3
LIG3-212ENST00000590181 ANGEL2Q5VTE6 544 aaKnown RBP13.19□□□□□ -0.3
LIG3-212ENST00000590181 RSBN1LQ6PCB5 846 aaPredicted RBP13.19□□□□□ -0.3
LIG3-212ENST00000590181 LDHAL6AQ6ZMR3 332 aa13.19□□□□□ -0.3
LIG3-212ENST00000590181 OGFOD1Q8N543 542 aa13.19□□□□□ -0.3
LIG3-212ENST00000590181 CCDC85AQ96PX6 553 aaPredicted RBP13.19□□□□□ -0.3
LIG3-212ENST00000590181 CSRNP1Q96S65 589 aa13.19□□□□□ -0.3
LIG3-212ENST00000590181 FBXO3Q9UK99 471 aa13.19□□□□□ -0.3
LIG3-212ENST00000590181 MROH5Q6ZUA9 1318 aa13.18□□□□□ -0.3
LIG3-212ENST00000590181 ZNF280AP59817 542 aaPredicted RBP13.18□□□□□ -0.3
LIG3-212ENST00000590181 CHRNDQ07001 517 aa13.18□□□□□ -0.3
LIG3-212ENST00000590181 RABL6Q3YEC7 729 aaPredicted RBP13.18□□□□□ -0.3
LIG3-212ENST00000590181 CDCA7LQ96GN5 454 aa13.18□□□□□ -0.3
LIG3-212ENST00000590181 HPS5Q9UPZ3 1129 aa13.18□□□□□ -0.3
LIG3-212ENST00000590181 USP17L8P0C7I0 530 aa13.17□□□□□ -0.3
LIG3-212ENST00000590181 FKBP1AP62942 108 aaKnown RBP13.17□□□□□ -0.3
LIG3-212ENST00000590181 FKBP1BP68106 108 aa13.17□□□□□ -0.3
LIG3-212ENST00000590181 UBE4AQ14139 1066 aa13.17□□□□□ -0.3
LIG3-212ENST00000590181 ZNF804AQ7Z570 1209 aa13.17□□□□□ -0.3
LIG3-212ENST00000590181 REM2Q8IYK8 340 aaPredicted RBP13.17□□□□□ -0.3
LIG3-212ENST00000590181 CNNM1Q9NRU3 951 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms