RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 FKBPLQ9UIM3 349 aa6.77□□□□□ -1.33
LIG3-210ENST00000588109 BTAF1O14981 1849 aa6.77□□□□□ -1.33
LIG3-210ENST00000588109 SBF2Q86WG5 1849 aa6.77□□□□□ -1.33
LIG3-210ENST00000588109 C5P01031 1676 aa6.77□□□□□ -1.33
LIG3-210ENST00000588109 PRAMEF22A3QJZ6 481 aa6.76□□□□□ -1.33
LIG3-210ENST00000588109 BCAR3O75815 825 aa6.76□□□□□ -1.33
LIG3-210ENST00000588109 STARD3NLO95772 234 aa6.76□□□□□ -1.33
LIG3-210ENST00000588109 NEFLP07196 543 aa6.76□□□□□ -1.33
LIG3-210ENST00000588109 DNAJC10Q8IXB1 793 aa6.76□□□□□ -1.33
LIG3-210ENST00000588109 TEX13AQ9BXU3 409 aaPredicted RBP6.76□□□□□ -1.33
LIG3-210ENST00000588109 LAMB4A4D0S4 1761 aa6.76□□□□□ -1.33
LIG3-210ENST00000588109 KIF16BQ96L93 1317 aa6.76□□□□□ -1.33
LIG3-210ENST00000588109 LOC102724428A0A0B4J2F2 783 aa6.75□□□□□ -1.33
LIG3-210ENST00000588109 NRG2O14511 850 aaPredicted RBP6.75□□□□□ -1.33
LIG3-210ENST00000588109 IPO8O15397 1037 aaKnown RBP6.75□□□□□ -1.33
LIG3-210ENST00000588109 GDF9O60383 454 aa6.75□□□□□ -1.33
LIG3-210ENST00000588109 APBA3O96018 575 aa6.75□□□□□ -1.33
LIG3-210ENST00000588109 MYL6BP14649 208 aa6.75□□□□□ -1.33
LIG3-210ENST00000588109 VARSP26640 1264 aaKnown RBP6.75□□□□□ -1.33
LIG3-210ENST00000588109 RRP1P56182 461 aaKnown RBP6.75□□□□□ -1.33
LIG3-210ENST00000588109 SIK1P57059 783 aa6.75□□□□□ -1.33
LIG3-210ENST00000588109 SKOR1P84550 965 aa6.75□□□□□ -1.33
LIG3-210ENST00000588109 PRR20EP86478 221 aa6.75□□□□□ -1.33
LIG3-210ENST00000588109 PRR20CP86479 221 aa6.75□□□□□ -1.33
LIG3-210ENST00000588109 PRR20DP86480 221 aa6.75□□□□□ -1.33
LIG3-210ENST00000588109 PRR20BP86481 221 aa6.75□□□□□ -1.33
LIG3-210ENST00000588109 PRR20AP86496 221 aa6.75□□□□□ -1.33
LIG3-210ENST00000588109 SF3B2Q13435 895 aaKnown RBP6.75□□□□□ -1.33
LIG3-210ENST00000588109 SNIP1Q8TAD8 396 aaKnown RBP6.75□□□□□ -1.33
LIG3-210ENST00000588109 FAM174AQ8TBP5 190 aa6.75□□□□□ -1.33
LIG3-210ENST00000588109 MRGPRX2Q96LB1 330 aa6.75□□□□□ -1.33
LIG3-210ENST00000588109 HMX1Q9NP08 348 aaPredicted RBP6.75□□□□□ -1.33
LIG3-210ENST00000588109 PKD2L1Q9P0L9 805 aa6.75□□□□□ -1.33
LIG3-210ENST00000588109 CHPF2Q9P2E5 772 aa6.75□□□□□ -1.33
LIG3-210ENST00000588109 DBF4Q9UBU7 674 aaPredicted RBP6.75□□□□□ -1.33
LIG3-210ENST00000588109 CCNL1Q9UK58 526 aaPredicted RBP6.75□□□□□ -1.33
LIG3-210ENST00000588109 USP16Q9Y5T5 823 aa6.75□□□□□ -1.33
LIG3-210ENST00000588109 ZC3H4Q9UPT8 1303 aaKnown RBP6.75□□□□□ -1.33
LIG3-210ENST00000588109 MAGEB6P1A0A0J9YX57 407 aa6.74□□□□□ -1.33
LIG3-210ENST00000588109 PLIN1O60240 522 aa6.74□□□□□ -1.33
LIG3-210ENST00000588109 PTK2Q05397 1052 aa6.74□□□□□ -1.33
LIG3-210ENST00000588109 ZKSCAN2Q63HK3 967 aa6.74□□□□□ -1.33
LIG3-210ENST00000588109 PDXDC2PQ6P474 469 aa6.74□□□□□ -1.33
LIG3-210ENST00000588109 NPM2Q86SE8 214 aaKnown RBP6.74□□□□□ -1.33
LIG3-210ENST00000588109 ZBTB33Q86T24 672 aa6.74□□□□□ -1.33
LIG3-210ENST00000588109 FTSJ3Q8IY81 847 aaKnown RBP6.74□□□□□ -1.33
LIG3-210ENST00000588109 FOXJ1Q92949 421 aa6.74□□□□□ -1.33
LIG3-210ENST00000588109 SNRKQ9NRH2 765 aa6.74□□□□□ -1.33
LIG3-210ENST00000588109 HYPKQ9NX55 129 aa6.74□□□□□ -1.33
LIG3-210ENST00000588109 NOB1Q9ULX3 412 aaKnown RBP6.74□□□□□ -1.33
LIG3-210ENST00000588109 ZNF330Q9Y3S2 320 aaPredicted RBP6.74□□□□□ -1.33
LIG3-210ENST00000588109 ERBB4Q15303 1308 aa6.74□□□□□ -1.33
LIG3-210ENST00000588109 TJP1Q07157 1748 aa6.73□□□□□ -1.33
LIG3-210ENST00000588109 ANXA1P04083 346 aa6.73□□□□□ -1.33
LIG3-210ENST00000588109 CYP19A1P11511 503 aaPredicted RBP6.73□□□□□ -1.33
LIG3-210ENST00000588109 PIP4K2AP48426 406 aaPredicted RBP6.73□□□□□ -1.33
LIG3-210ENST00000588109 IRX6P78412 446 aaPredicted RBP6.73□□□□□ -1.33
LIG3-210ENST00000588109 AIMP1Q12904 312 aaKnown RBP6.73□□□□□ -1.33
LIG3-210ENST00000588109 FKBP5Q13451 457 aaPredicted RBP6.73□□□□□ -1.33
LIG3-210ENST00000588109 ITPK1Q13572 414 aa6.73□□□□□ -1.33
LIG3-210ENST00000588109 ARID5BQ14865 1188 aa6.73□□□□□ -1.33
LIG3-210ENST00000588109 PKDCCQ504Y2 493 aa6.73□□□□□ -1.33
LIG3-210ENST00000588109 EPS8L1Q8TE68 723 aa6.73□□□□□ -1.33
LIG3-210ENST00000588109 SLC4A9Q96Q91 983 aa6.73□□□□□ -1.33
LIG3-210ENST00000588109 ARHGAP9Q9BRR9 750 aa6.73□□□□□ -1.33
LIG3-210ENST00000588109 API5Q9BZZ5 524 aaKnown RBP6.73□□□□□ -1.33
LIG3-210ENST00000588109 DDX21Q9NR30 783 aaKnown RBP eCLIP6.73□□□□□ -1.33
LIG3-210ENST00000588109 PTPRCP08575 1304 aa6.73□□□□□ -1.33
LIG3-210ENST00000588109 LY75O60449 1722 aa6.73□□□□□ -1.33
LIG3-210ENST00000588109 TNS1Q9HBL0 1735 aaKnown RBP6.73□□□□□ -1.33
LIG3-210ENST00000588109 ZNF831Q5JPB2 1677 aa6.72□□□□□ -1.33
LIG3-210ENST00000588109 FAM187AA6NFU0 413 aa6.72□□□□□ -1.33
LIG3-210ENST00000588109 DDX58O95786 925 aaKnown RBP6.72□□□□□ -1.33
LIG3-210ENST00000588109 ALDH1A1P00352 501 aa6.72□□□□□ -1.33
LIG3-210ENST00000588109 A1BGP04217 495 aa6.72□□□□□ -1.33
LIG3-210ENST00000588109 HMGB2P26583 209 aaKnown RBP6.72□□□□□ -1.33
LIG3-210ENST00000588109 KCNQ4P56696 695 aa6.72□□□□□ -1.33
LIG3-210ENST00000588109 FLIIQ13045 1269 aa6.72□□□□□ -1.33
LIG3-210ENST00000588109 TXNRD1Q16881 649 aa6.72□□□□□ -1.33
LIG3-210ENST00000588109 PROSER3Q2NL68 480 aa6.72□□□□□ -1.33
LIG3-210ENST00000588109 SLC27A3Q5K4L6 730 aa6.72□□□□□ -1.33
LIG3-210ENST00000588109 ATF7IPQ6VMQ6 1270 aa6.72□□□□□ -1.33
LIG3-210ENST00000588109 Q6ZNB5 142 aa6.72□□□□□ -1.33
LIG3-210ENST00000588109 G2E3Q7L622 706 aa6.72□□□□□ -1.33
LIG3-210ENST00000588109 CLUAP1Q96AJ1 413 aa6.72□□□□□ -1.33
LIG3-210ENST00000588109 PHAXQ9H814 394 aaKnown RBP6.72□□□□□ -1.33
LIG3-210ENST00000588109 CCDC87Q9NVE4 849 aa6.72□□□□□ -1.33
LIG3-210ENST00000588109 PODXL2Q9NZ53 605 aa6.72□□□□□ -1.33
LIG3-210ENST00000588109 NDUFB9Q9Y6M9 179 aa6.72□□□□□ -1.33
LIG3-210ENST00000588109 WASF2Q9Y6W5 498 aa6.72□□□□□ -1.33
LIG3-210ENST00000588109 CICQ96RK0 1608 aaPredicted RBP6.72□□□□□ -1.33
LIG3-210ENST00000588109 CACNA1FO60840 1977 aa6.71□□□□□ -1.33
LIG3-210ENST00000588109 COL5A3P25940 1745 aaPredicted RBP6.71□□□□□ -1.34
LIG3-210ENST00000588109 SOCS7O14512 581 aa6.71□□□□□ -1.34
LIG3-210ENST00000588109 PLSCR1O15162 318 aa6.71□□□□□ -1.34
LIG3-210ENST00000588109 TRIM27P14373 513 aa6.71□□□□□ -1.34
LIG3-210ENST00000588109 CRKLP46109 303 aaKnown RBP6.71□□□□□ -1.34
LIG3-210ENST00000588109 BAG6P46379 1132 aa6.71□□□□□ -1.34
LIG3-210ENST00000588109 NBPF10Q6P3W6 841 aaKnown RBP6.71□□□□□ -1.34
LIG3-210ENST00000588109 SLC4A10Q6U841 1118 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms