RNA–Protein interactions for RNA: ENST00000585229.1

SMCHD1-212, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 555 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-212ENST00000585229 MARVELD3Q96A59 401 aa12.22□□□□□ -0.45
SMCHD1-212ENST00000585229 GREM2Q9H772 168 aa12.22□□□□□ -0.45
SMCHD1-212ENST00000585229 PA2G4Q9UQ80 394 aaKnown RBP12.22□□□□□ -0.45
SMCHD1-212ENST00000585229 EXOC6BQ9Y2D4 811 aa12.22□□□□□ -0.45
SMCHD1-212ENST00000585229 DLEC1Q9Y238 1755 aa12.21□□□□□ -0.45
SMCHD1-212ENST00000585229 MMP10P09238 476 aa12.21□□□□□ -0.45
SMCHD1-212ENST00000585229 ST5P78524 1137 aa12.21□□□□□ -0.45
SMCHD1-212ENST00000585229 CHD1LQ86WJ1 897 aa12.21□□□□□ -0.45
SMCHD1-212ENST00000585229 ERC1Q8IUD2 1116 aa12.21□□□□□ -0.45
SMCHD1-212ENST00000585229 KIF1BPQ96EK5 621 aa12.21□□□□□ -0.45
SMCHD1-212ENST00000585229 PDGFDQ9GZP0 370 aaPredicted RBP12.21□□□□□ -0.45
SMCHD1-212ENST00000585229 TAF1P21675 1872 aa12.21□□□□□ -0.46
SMCHD1-212ENST00000585229 LRRC37AA6NMS7 1700 aa12.2□□□□□ -0.46
SMCHD1-212ENST00000585229 ARAP2Q8WZ64 1704 aa12.2□□□□□ -0.46
SMCHD1-212ENST00000585229 ANKRD18BA2A2Z9 1011 aa12.2□□□□□ -0.46
SMCHD1-212ENST00000585229 EVI5O60447 810 aa12.2□□□□□ -0.46
SMCHD1-212ENST00000585229 ITGA6P23229 1130 aa12.2□□□□□ -0.46
SMCHD1-212ENST00000585229 GTF2E1P29083 439 aaPredicted RBP12.2□□□□□ -0.46
SMCHD1-212ENST00000585229 IFIT5Q13325 482 aaKnown RBP12.2□□□□□ -0.46
SMCHD1-212ENST00000585229 CCDC57Q2TAC2 916 aa12.2□□□□□ -0.46
SMCHD1-212ENST00000585229 CRY2Q49AN0 593 aa12.2□□□□□ -0.46
SMCHD1-212ENST00000585229 RHPN1Q8TCX5 695 aa12.2□□□□□ -0.46
SMCHD1-212ENST00000585229 NLRP3Q96P20 1036 aa12.2□□□□□ -0.46
SMCHD1-212ENST00000585229 CHMP3Q9Y3E7 222 aa12.2□□□□□ -0.46
SMCHD1-212ENST00000585229 PARP3Q9Y6F1 533 aa12.2□□□□□ -0.46
SMCHD1-212ENST00000585229 C10orf71Q711Q0 1435 aa12.2□□□□□ -0.46
SMCHD1-212ENST00000585229 SALL3Q9BXA9 1300 aa12.19□□□□□ -0.46
SMCHD1-212ENST00000585229 EYA2O00167 538 aa12.19□□□□□ -0.46
SMCHD1-212ENST00000585229 TBC1D12O60347 775 aa12.19□□□□□ -0.46
SMCHD1-212ENST00000585229 SASH1O94885 1247 aa12.19□□□□□ -0.46
SMCHD1-212ENST00000585229 G3BP1Q13283 466 aaKnown RBP eCLIP12.19□□□□□ -0.46
SMCHD1-212ENST00000585229 ANKRD45Q5TZF3 282 aa12.19□□□□□ -0.46
SMCHD1-212ENST00000585229 MSL1Q68DK7 614 aa12.19□□□□□ -0.46
SMCHD1-212ENST00000585229 ATG9AQ7Z3C6 839 aa12.19□□□□□ -0.46
SMCHD1-212ENST00000585229 KLHDC4Q8TBB5 520 aa12.19□□□□□ -0.46
SMCHD1-212ENST00000585229 BRIP1Q9BX63 1249 aa12.19□□□□□ -0.46
SMCHD1-212ENST00000585229 LRRCC1Q9C099 1032 aa12.19□□□□□ -0.46
SMCHD1-212ENST00000585229 KIAA1551Q9HCM1 1747 aa12.19□□□□□ -0.46
SMCHD1-212ENST00000585229 IL15P40933 162 aaPredicted RBP12.18□□□□□ -0.46
SMCHD1-212ENST00000585229 ZNF594Q96JF6 807 aaPredicted RBP12.18□□□□□ -0.46
SMCHD1-212ENST00000585229 MTFR1LQ9H019 292 aa12.18□□□□□ -0.46
SMCHD1-212ENST00000585229 HOXA10P31260 410 aaPredicted RBP12.17□□□□□ -0.46
SMCHD1-212ENST00000585229 CCDC24Q8N4L8 307 aa12.17□□□□□ -0.46
SMCHD1-212ENST00000585229 CCDC85AQ96PX6 553 aaPredicted RBP12.17□□□□□ -0.46
SMCHD1-212ENST00000585229 CDC5LQ99459 802 aaKnown RBP12.17□□□□□ -0.46
SMCHD1-212ENST00000585229 LNPKQ9C0E8 428 aa12.17□□□□□ -0.46
SMCHD1-212ENST00000585229 GPR108Q9NPR9 543 aa12.17□□□□□ -0.46
SMCHD1-212ENST00000585229 SEC31BQ9NQW1 1179 aa12.17□□□□□ -0.46
SMCHD1-212ENST00000585229 RIPOR2Q9Y4F9 1068 aa12.17□□□□□ -0.46
SMCHD1-212ENST00000585229 ZNF609O15014 1411 aa12.17□□□□□ -0.46
SMCHD1-212ENST00000585229 POTEB3A0JP26 581 aa12.16□□□□□ -0.46
SMCHD1-212ENST00000585229 NPHP1O15259 732 aa12.16□□□□□ -0.46
SMCHD1-212ENST00000585229 SMARCA5O60264 1052 aaPredicted RBP12.16□□□□□ -0.46
SMCHD1-212ENST00000585229 R3HDM1Q15032 1099 aaKnown RBP12.16□□□□□ -0.46
SMCHD1-212ENST00000585229 LRRC24Q50LG9 513 aa12.16□□□□□ -0.46
SMCHD1-212ENST00000585229 POTEBQ6S5H4 581 aa12.16□□□□□ -0.46
SMCHD1-212ENST00000585229 VGLL2Q8N8G2 317 aa12.16□□□□□ -0.46
SMCHD1-212ENST00000585229 PUS3Q9BZE2 481 aaKnown RBP12.16□□□□□ -0.46
SMCHD1-212ENST00000585229 SIL1Q9H173 461 aa12.16□□□□□ -0.46
SMCHD1-212ENST00000585229 LHX6Q9UPM6 363 aa12.16□□□□□ -0.46
SMCHD1-212ENST00000585229 LTBP1Q14766 1721 aa12.16□□□□□ -0.46
SMCHD1-212ENST00000585229 PDE6BP35913 854 aa12.15□□□□□ -0.46
SMCHD1-212ENST00000585229 IGHMBP2P38935 993 aaKnown RBP12.15□□□□□ -0.46
SMCHD1-212ENST00000585229 EMP3P54852 163 aa12.15□□□□□ -0.46
SMCHD1-212ENST00000585229 OS9Q13438 667 aaPredicted RBP12.15□□□□□ -0.46
SMCHD1-212ENST00000585229 GRAPQ13588 217 aa12.15□□□□□ -0.46
SMCHD1-212ENST00000585229 TAF7LQ5H9L4 462 aa12.15□□□□□ -0.46
SMCHD1-212ENST00000585229 LDHAL6AQ6ZMR3 332 aa12.15□□□□□ -0.46
SMCHD1-212ENST00000585229 SKAP1Q86WV1 359 aa12.15□□□□□ -0.46
SMCHD1-212ENST00000585229 ANKRD18AQ8IVF6 992 aa12.15□□□□□ -0.46
SMCHD1-212ENST00000585229 GRAPLQ8TC17 118 aaPredicted RBP12.15□□□□□ -0.46
SMCHD1-212ENST00000585229 CRAMP1Q96RY5 1269 aa12.15□□□□□ -0.46
SMCHD1-212ENST00000585229 OSBPL3Q9H4L5 887 aa12.15□□□□□ -0.46
SMCHD1-212ENST00000585229 BSDC1Q9NW68 430 aaPredicted RBP12.15□□□□□ -0.46
SMCHD1-212ENST00000585229 AOX1Q06278 1338 aa12.14□□□□□ -0.47
SMCHD1-212ENST00000585229 MROH5Q6ZUA9 1318 aa12.14□□□□□ -0.47
SMCHD1-212ENST00000585229 APBB1O00213 710 aa12.14□□□□□ -0.47
SMCHD1-212ENST00000585229 SRGNP10124 158 aa12.14□□□□□ -0.47
SMCHD1-212ENST00000585229 TFCP2Q12800 502 aa12.14□□□□□ -0.47
SMCHD1-212ENST00000585229 DDX46Q7L014 1031 aaKnown RBP12.14□□□□□ -0.47
SMCHD1-212ENST00000585229 PLEKHM2Q8IWE5 1019 aa12.14□□□□□ -0.47
SMCHD1-212ENST00000585229 CLASRPQ8N2M8 674 aaKnown RBP12.14□□□□□ -0.47
SMCHD1-212ENST00000585229 CELF1Q92879 486 aaKnown RBP12.14□□□□□ -0.47
SMCHD1-212ENST00000585229 RBM17Q96I25 401 aaKnown RBP12.14□□□□□ -0.47
SMCHD1-212ENST00000585229 IL1RAPL2Q9NP60 686 aa12.14□□□□□ -0.47
SMCHD1-212ENST00000585229 STAP2Q9UGK3 403 aa12.14□□□□□ -0.47
SMCHD1-212ENST00000585229 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.14□□□□□ -0.47
SMCHD1-212ENST00000585229 BRCA1P38398 1863 aaKnown RBP12.14□□□□□ -0.47
SMCHD1-212ENST00000585229 CACNA1SQ13698 1873 aa12.14□□□□□ -0.47
SMCHD1-212ENST00000585229 ZBTB7AO95365 584 aa12.13□□□□□ -0.47
SMCHD1-212ENST00000585229 NPR1P16066 1061 aa12.13□□□□□ -0.47
SMCHD1-212ENST00000585229 RPS8P62241 208 aaKnown RBP12.13□□□□□ -0.47
SMCHD1-212ENST00000585229 TNNI3KQ59H18 835 aa12.13□□□□□ -0.47
SMCHD1-212ENST00000585229 EAF2Q96CJ1 260 aaPredicted RBP12.13□□□□□ -0.47
SMCHD1-212ENST00000585229 MPHOSPH8Q99549 860 aa12.13□□□□□ -0.47
SMCHD1-212ENST00000585229 CEP126Q9P2H0 1117 aa12.13□□□□□ -0.47
SMCHD1-212ENST00000585229 FPGT-TNNI3KV9GXZ4 949 aa12.13□□□□□ -0.47
SMCHD1-212ENST00000585229 SPDYE16A6NNV3 312 aaPredicted RBP12.12□□□□□ -0.47
SMCHD1-212ENST00000585229 PDE8BO95263 885 aa12.12□□□□□ -0.47
SMCHD1-212ENST00000585229 FGFR2P21802 821 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms