RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 FAM168AQ92567 244 aa7.68□□□□□ -1.18
SMCHD1-209ENST00000583441 SEC31BQ9NQW1 1179 aa7.68□□□□□ -1.18
SMCHD1-209ENST00000583441 USP20Q9Y2K6 914 aa7.68□□□□□ -1.18
SMCHD1-209ENST00000583441 SMNDC1O75940 238 aaKnown RBP eCLIP7.67□□□□□ -1.18
SMCHD1-209ENST00000583441 DGKZQ13574 1117 aa7.67□□□□□ -1.18
SMCHD1-209ENST00000583441 CMTR1Q8N1G2 835 aaKnown RBP7.67□□□□□ -1.18
SMCHD1-209ENST00000583441 OGFOD1Q8N543 542 aa7.67□□□□□ -1.18
SMCHD1-209ENST00000583441 ZSCAN18Q8TBC5 510 aaPredicted RBP7.67□□□□□ -1.18
SMCHD1-209ENST00000583441 TMEM40Q8WWA1 233 aa7.67□□□□□ -1.18
SMCHD1-209ENST00000583441 KLHDC7BQ96G42 594 aa7.67□□□□□ -1.18
SMCHD1-209ENST00000583441 FAM84AQ96KN4 292 aa7.67□□□□□ -1.18
SMCHD1-209ENST00000583441 RUSC1Q9BVN2 902 aa7.67□□□□□ -1.18
SMCHD1-209ENST00000583441 FAM177BA6PVY3 158 aa7.66□□□□□ -1.18
SMCHD1-209ENST00000583441 ZNF792Q3KQV3 632 aa7.66□□□□□ -1.18
SMCHD1-209ENST00000583441 PAOXQ6QHF9 649 aa7.66□□□□□ -1.18
SMCHD1-209ENST00000583441 SHISA5Q8N114 240 aa7.66□□□□□ -1.18
SMCHD1-209ENST00000583441 FAM95CA0A1B0GW59 222 aa7.65□□□□□ -1.18
SMCHD1-209ENST00000583441 SPACA7Q96KW9 195 aa7.65□□□□□ -1.18
SMCHD1-209ENST00000583441 ATG4DQ86TL0 474 aaPredicted RBP7.64□□□□□ -1.19
SMCHD1-209ENST00000583441 SIX5Q8N196 739 aa7.64□□□□□ -1.19
SMCHD1-209ENST00000583441 BHLHE22Q8NFJ8 381 aaPredicted RBP7.64□□□□□ -1.19
SMCHD1-209ENST00000583441 OPLAHO14841 1288 aa7.63□□□□□ -1.19
SMCHD1-209ENST00000583441 CFPP27918 469 aa7.63□□□□□ -1.19
SMCHD1-209ENST00000583441 ATP11AP98196 1134 aa7.63□□□□□ -1.19
SMCHD1-209ENST00000583441 RGL4Q8IZJ4 473 aa7.63□□□□□ -1.19
SMCHD1-209ENST00000583441 ZNF594Q96JF6 807 aaPredicted RBP7.63□□□□□ -1.19
SMCHD1-209ENST00000583441 TBC1D32Q96NH3 1257 aa7.63□□□□□ -1.19
SMCHD1-209ENST00000583441 ALG2Q9H553 416 aa7.63□□□□□ -1.19
SMCHD1-209ENST00000583441 SLC5A6Q9Y289 635 aa7.63□□□□□ -1.19
SMCHD1-209ENST00000583441 RAP1GAPP47736 663 aa7.62□□□□□ -1.19
SMCHD1-209ENST00000583441 C11orf91Q3C1V1 193 aa7.61□□□□□ -1.19
SMCHD1-209ENST00000583441 SIAH1Q8IUQ4 282 aa7.61□□□□□ -1.19
SMCHD1-209ENST00000583441 PLEKHM2Q8IWE5 1019 aa7.61□□□□□ -1.19
SMCHD1-209ENST00000583441 C12orf50Q8NA57 414 aaPredicted RBP7.61□□□□□ -1.19
SMCHD1-209ENST00000583441 LRRC4CQ9HCJ2 640 aa7.61□□□□□ -1.19
SMCHD1-209ENST00000583441 SH2B1Q9NRF2 756 aaPredicted RBP7.61□□□□□ -1.19
SMCHD1-209ENST00000583441 ZC3H7BQ9UGR2 993 aaKnown RBP7.61□□□□□ -1.19
SMCHD1-209ENST00000583441 USP17L3A6NCW0 530 aa7.6□□□□□ -1.19
SMCHD1-209ENST00000583441 USP17L4A6NCW7 530 aa7.6□□□□□ -1.19
SMCHD1-209ENST00000583441 EPHA1P21709 976 aa7.6□□□□□ -1.19
SMCHD1-209ENST00000583441 NLRP12P59046 1061 aa7.6□□□□□ -1.19
SMCHD1-209ENST00000583441 MESP2Q0VG99 397 aa7.6□□□□□ -1.19
SMCHD1-209ENST00000583441 HYAL2Q12891 473 aa7.6□□□□□ -1.19
SMCHD1-209ENST00000583441 DUSP27Q5VZP5 1158 aa7.6□□□□□ -1.19
SMCHD1-209ENST00000583441 USP17L2Q6R6M4 530 aa7.6□□□□□ -1.19
SMCHD1-209ENST00000583441 LCNL1Q6ZST4 164 aa7.6□□□□□ -1.19
SMCHD1-209ENST00000583441 USP17L1Q7RTZ2 530 aa7.6□□□□□ -1.19
SMCHD1-209ENST00000583441 HINFPQ9BQA5 517 aa7.6□□□□□ -1.19
SMCHD1-209ENST00000583441 ADAM19Q9H013 955 aa7.6□□□□□ -1.19
SMCHD1-209ENST00000583441 JAG2Q9Y219 1238 aa7.6□□□□□ -1.19
SMCHD1-209ENST00000583441 MEGF11A6BM72 1044 aa7.59□□□□□ -1.19
SMCHD1-209ENST00000583441 ADMP35318 185 aa7.59□□□□□ -1.19
SMCHD1-209ENST00000583441 USP11P51784 963 aa7.59□□□□□ -1.19
SMCHD1-209ENST00000583441 ZNF574Q6ZN55 896 aaPredicted RBP7.59□□□□□ -1.19
SMCHD1-209ENST00000583441 ZAR1Q86SH2 424 aa7.59□□□□□ -1.19
SMCHD1-209ENST00000583441 NLRP13Q86W25 1043 aa7.59□□□□□ -1.19
SMCHD1-209ENST00000583441 CILP2Q8IUL8 1156 aa7.59□□□□□ -1.19
SMCHD1-209ENST00000583441 BCL7CQ8WUZ0 217 aaPredicted RBP7.59□□□□□ -1.19
SMCHD1-209ENST00000583441 MKRN1Q9UHC7 482 aaKnown RBP7.59□□□□□ -1.19
SMCHD1-209ENST00000583441 FAM170BA6NMN3 283 aa7.58□□□□□ -1.2
SMCHD1-209ENST00000583441 PTPRAP18433 802 aa7.58□□□□□ -1.2
SMCHD1-209ENST00000583441 PIP4K2BP78356 416 aa7.58□□□□□ -1.2
SMCHD1-209ENST00000583441 NUTM2GQ5VZR2 741 aa7.58□□□□□ -1.2
SMCHD1-209ENST00000583441 TTLL10Q6ZVT0 673 aa7.58□□□□□ -1.2
SMCHD1-209ENST00000583441 LRRC56Q8IYG6 542 aaPredicted RBP7.58□□□□□ -1.2
SMCHD1-209ENST00000583441 WNT8BQ93098 351 aa7.58□□□□□ -1.2
SMCHD1-209ENST00000583441 RC3H2Q9HBD1 1191 aaKnown RBP7.58□□□□□ -1.2
SMCHD1-209ENST00000583441 OSGEPQ9NPF4 335 aa7.58□□□□□ -1.2
SMCHD1-209ENST00000583441 LMCD1Q9NZU5 365 aa7.58□□□□□ -1.2
SMCHD1-209ENST00000583441 KCNMB2Q9Y691 235 aa7.58□□□□□ -1.2
SMCHD1-209ENST00000583441 ZSCAN22P10073 491 aaPredicted RBP7.57□□□□□ -1.2
SMCHD1-209ENST00000583441 SEC13P55735 322 aa7.57□□□□□ -1.2
SMCHD1-209ENST00000583441 CABP4P57796 275 aa7.57□□□□□ -1.2
SMCHD1-209ENST00000583441 STK11IPQ8N1F8 1099 aa7.57□□□□□ -1.2
SMCHD1-209ENST00000583441 GLIS3Q8NEA6 775 aa7.57□□□□□ -1.2
SMCHD1-209ENST00000583441 FBLIM1Q8WUP2 373 aa7.57□□□□□ -1.2
SMCHD1-209ENST00000583441 RASSF4Q9H2L5 321 aa7.57□□□□□ -1.2
SMCHD1-209ENST00000583441 RAPGEFL1Q9UHV5 662 aa7.57□□□□□ -1.2
SMCHD1-209ENST00000583441 LRRC10BA6NIK2 292 aa7.56□□□□□ -1.2
SMCHD1-209ENST00000583441 H3BRJ5 948 aa7.56□□□□□ -1.2
SMCHD1-209ENST00000583441 DKK1O94907 266 aa7.56□□□□□ -1.2
SMCHD1-209ENST00000583441 IGFBP4P22692 258 aa7.56□□□□□ -1.2
SMCHD1-209ENST00000583441 COL13A1Q5TAT6 717 aaPredicted RBP7.56□□□□□ -1.2
SMCHD1-209ENST00000583441 ADAMTSL4Q6UY14 1074 aa7.56□□□□□ -1.2
SMCHD1-209ENST00000583441 C1QL4Q86Z23 238 aa7.56□□□□□ -1.2
SMCHD1-209ENST00000583441 PRKAG2Q9UGJ0 569 aa7.56□□□□□ -1.2
SMCHD1-209ENST00000583441 CYP27A1Q02318 531 aa7.55□□□□□ -1.2
SMCHD1-209ENST00000583441 TREML1Q86YW5 311 aa7.55□□□□□ -1.2
SMCHD1-209ENST00000583441 OR13H1Q8NG92 308 aa7.55□□□□□ -1.2
SMCHD1-209ENST00000583441 YIPF2Q9BWQ6 316 aa7.55□□□□□ -1.2
SMCHD1-209ENST00000583441 QTRT2Q9H974 415 aaKnown RBP7.55□□□□□ -1.2
SMCHD1-209ENST00000583441 CYP4F12Q9HCS2 524 aa7.55□□□□□ -1.2
SMCHD1-209ENST00000583441 SCNN1AP37088 669 aa7.54□□□□□ -1.2
SMCHD1-209ENST00000583441 ECM1Q16610 540 aa7.54□□□□□ -1.2
SMCHD1-209ENST00000583441 SPRED2Q7Z698 418 aa7.54□□□□□ -1.2
SMCHD1-209ENST00000583441 VTI1AQ96AJ9 217 aa7.54□□□□□ -1.2
SMCHD1-209ENST00000583441 PBX4Q9BYU1 374 aa7.54□□□□□ -1.2
SMCHD1-209ENST00000583441 ZMYND15Q9H091 742 aa7.54□□□□□ -1.2
SMCHD1-209ENST00000583441 TIMELESSQ9UNS1 1208 aa7.54□□□□□ -1.2
SMCHD1-209ENST00000583441 LGR5O75473 907 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms