RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 TRIM33Q9UPN9 1127 aa8.04□□□□□ -1.12
SMCHD1-204ENST00000581226 PDE2AO00408 941 aaPredicted RBP8.03□□□□□ -1.12
SMCHD1-204ENST00000581226 GNB5O14775 395 aa8.03□□□□□ -1.12
SMCHD1-204ENST00000581226 GRIK5Q16478 980 aa8.03□□□□□ -1.12
SMCHD1-204ENST00000581226 PEAR1Q5VY43 1037 aaPredicted RBP8.03□□□□□ -1.12
SMCHD1-204ENST00000581226 NPAS4Q8IUM7 802 aa8.03□□□□□ -1.12
SMCHD1-204ENST00000581226 A0A1W2PP55 124 aa8.02□□□□□ -1.13
SMCHD1-204ENST00000581226 NFKBIEO00221 500 aa8.02□□□□□ -1.13
SMCHD1-204ENST00000581226 NID1P14543 1247 aa8.02□□□□□ -1.13
SMCHD1-204ENST00000581226 IRS1P35568 1242 aa8.02□□□□□ -1.13
SMCHD1-204ENST00000581226 ATP2B2Q01814 1243 aa8.02□□□□□ -1.13
SMCHD1-204ENST00000581226 COL9A3Q14050 684 aaPredicted RBP8.02□□□□□ -1.13
SMCHD1-204ENST00000581226 COL19A1Q14993 1142 aa8.02□□□□□ -1.13
SMCHD1-204ENST00000581226 EAPPQ56P03 285 aaPredicted RBP8.02□□□□□ -1.13
SMCHD1-204ENST00000581226 TMEM102Q8N9M5 508 aaPredicted RBP8.02□□□□□ -1.13
SMCHD1-204ENST00000581226 EPS8L3Q8TE67 593 aaKnown RBP8.02□□□□□ -1.13
SMCHD1-204ENST00000581226 HHIPQ96QV1 700 aa8.02□□□□□ -1.13
SMCHD1-204ENST00000581226 POP1Q99575 1024 aaKnown RBP8.02□□□□□ -1.13
SMCHD1-204ENST00000581226 LACRTQ9GZZ8 138 aa8.02□□□□□ -1.13
SMCHD1-204ENST00000581226 NLRP2Q9NX02 1062 aa8.02□□□□□ -1.13
SMCHD1-204ENST00000581226 WWC3Q9ULE0 1092 aa8.02□□□□□ -1.13
SMCHD1-204ENST00000581226 GADD45BO75293 160 aaPredicted RBP8.01□□□□□ -1.13
SMCHD1-204ENST00000581226 LDHBP07195 334 aaKnown RBP8.01□□□□□ -1.13
SMCHD1-204ENST00000581226 MSL1Q68DK7 614 aa8.01□□□□□ -1.13
SMCHD1-204ENST00000581226 ALG1LQ6GMV1 187 aa8.01□□□□□ -1.13
SMCHD1-204ENST00000581226 WFDC8Q8IUA0 241 aa8.01□□□□□ -1.13
SMCHD1-204ENST00000581226 IL22RA1Q8N6P7 574 aa8.01□□□□□ -1.13
SMCHD1-204ENST00000581226 NXPE3Q969Y0 559 aa8.01□□□□□ -1.13
SMCHD1-204ENST00000581226 SETDB2Q96T68 719 aa8.01□□□□□ -1.13
SMCHD1-204ENST00000581226 PLVAPQ9BX97 442 aa8.01□□□□□ -1.13
SMCHD1-204ENST00000581226 FAM177BA6PVY3 158 aa8□□□□□ -1.13
SMCHD1-204ENST00000581226 PTPRAP18433 802 aa8□□□□□ -1.13
SMCHD1-204ENST00000581226 TRAPPC3LQ5T215 181 aa8□□□□□ -1.13
SMCHD1-204ENST00000581226 KIAA0319Q5VV43 1072 aa8□□□□□ -1.13
SMCHD1-204ENST00000581226 DMRTC2Q8IXT2 367 aaPredicted RBP8□□□□□ -1.13
SMCHD1-204ENST00000581226 CACTIN-AS1Q8N1I8 211 aa8□□□□□ -1.13
SMCHD1-204ENST00000581226 TRIM11Q96F44 468 aa8□□□□□ -1.13
SMCHD1-204ENST00000581226 EHD4Q9H223 541 aa8□□□□□ -1.13
SMCHD1-204ENST00000581226 LIN7BQ9HAP6 207 aa8□□□□□ -1.13
SMCHD1-204ENST00000581226 CDC27P30260 824 aa7.99□□□□□ -1.13
SMCHD1-204ENST00000581226 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.99□□□□□ -1.13
SMCHD1-204ENST00000581226 PI16Q6UXB8 463 aa7.99□□□□□ -1.13
SMCHD1-204ENST00000581226 ADAMTSL4Q6UY14 1074 aa7.99□□□□□ -1.13
SMCHD1-204ENST00000581226 ASAP3Q8TDY4 903 aa7.99□□□□□ -1.13
SMCHD1-204ENST00000581226 FBF1Q8TES7 1133 aa7.99□□□□□ -1.13
SMCHD1-204ENST00000581226 SUV39H2Q9H5I1 410 aa7.99□□□□□ -1.13
SMCHD1-204ENST00000581226 SPDYE3A6NKU9 549 aa7.98□□□□□ -1.13
SMCHD1-204ENST00000581226 BAG6P46379 1132 aa7.98□□□□□ -1.13
SMCHD1-204ENST00000581226 GPAT2Q6NUI2 795 aa7.98□□□□□ -1.13
SMCHD1-204ENST00000581226 BHLHE41Q9C0J9 482 aaPredicted RBP7.98□□□□□ -1.13
SMCHD1-204ENST00000581226 ADAM19Q9H013 955 aa7.98□□□□□ -1.13
SMCHD1-204ENST00000581226 SH2B1Q9NRF2 756 aaPredicted RBP7.98□□□□□ -1.13
SMCHD1-204ENST00000581226 NOP53Q9NZM5 478 aaKnown RBP7.98□□□□□ -1.13
SMCHD1-204ENST00000581226 PPME1Q9Y570 386 aa7.98□□□□□ -1.13
SMCHD1-204ENST00000581226 CDC25BP30305 580 aa7.97□□□□□ -1.13
SMCHD1-204ENST00000581226 FGD1P98174 961 aa7.97□□□□□ -1.13
SMCHD1-204ENST00000581226 GRM2Q14416 872 aa7.97□□□□□ -1.13
SMCHD1-204ENST00000581226 CCNJLQ8IV13 435 aa7.97□□□□□ -1.13
SMCHD1-204ENST00000581226 TCF12Q99081 682 aa7.97□□□□□ -1.13
SMCHD1-204ENST00000581226 PPP4R2Q9NY27 417 aa7.97□□□□□ -1.13
SMCHD1-204ENST00000581226 CCDC9Q9Y3X0 531 aaKnown RBP7.97□□□□□ -1.13
SMCHD1-204ENST00000581226 METTL12A8MUP2 240 aa7.96□□□□□ -1.14
SMCHD1-204ENST00000581226 PRPF40AO75400 957 aaKnown RBP7.96□□□□□ -1.14
SMCHD1-204ENST00000581226 TRIM28Q13263 835 aaKnown RBP7.96□□□□□ -1.14
SMCHD1-204ENST00000581226 FBXO33Q7Z6M2 555 aa7.96□□□□□ -1.14
SMCHD1-204ENST00000581226 BSNDQ8WZ55 320 aa7.96□□□□□ -1.14
SMCHD1-204ENST00000581226 BCL2L13Q9BXK5 485 aa7.96□□□□□ -1.14
SMCHD1-204ENST00000581226 MUC3BQ9H195 1237 aa7.96□□□□□ -1.14
SMCHD1-204ENST00000581226 PODXL2Q9NZ53 605 aa7.96□□□□□ -1.14
SMCHD1-204ENST00000581226 TRAK1Q9UPV9 953 aa7.96□□□□□ -1.14
SMCHD1-204ENST00000581226 A0A096LPE4 126 aa7.95□□□□□ -1.14
SMCHD1-204ENST00000581226 A0A0A0MRY4 1105 aa7.95□□□□□ -1.14
SMCHD1-204ENST00000581226 A0A1W2PPZ6 126 aa7.95□□□□□ -1.14
SMCHD1-204ENST00000581226 LINC01387J3KSC0 135 aa7.95□□□□□ -1.14
SMCHD1-204ENST00000581226 EPHA1P21709 976 aa7.95□□□□□ -1.14
SMCHD1-204ENST00000581226 GRIA4P48058 902 aa7.95□□□□□ -1.14
SMCHD1-204ENST00000581226 CABP4P57796 275 aa7.95□□□□□ -1.14
SMCHD1-204ENST00000581226 RAC1P63000 192 aa7.95□□□□□ -1.14
SMCHD1-204ENST00000581226 PRRT3Q5FWE3 981 aa7.95□□□□□ -1.14
SMCHD1-204ENST00000581226 DUSP9Q99956 384 aaKnown RBP7.95□□□□□ -1.14
SMCHD1-204ENST00000581226 BCO2Q9BYV7 579 aa7.95□□□□□ -1.14
SMCHD1-204ENST00000581226 SPG7Q9UQ90 795 aa7.95□□□□□ -1.14
SMCHD1-204ENST00000581226 FAM229AH3BQW9 127 aa7.94□□□□□ -1.14
SMCHD1-204ENST00000581226 TAGLNQ01995 201 aaKnown RBP7.94□□□□□ -1.14
SMCHD1-204ENST00000581226 SPRED3Q2MJR0 410 aa7.94□□□□□ -1.14
SMCHD1-204ENST00000581226 TXNDC11Q6PKC3 985 aa7.94□□□□□ -1.14
SMCHD1-204ENST00000581226 NXPE4Q6UWF7 544 aa7.94□□□□□ -1.14
SMCHD1-204ENST00000581226 ILDR2Q71H61 639 aa7.94□□□□□ -1.14
SMCHD1-204ENST00000581226 SOX13Q9UN79 622 aa7.94□□□□□ -1.14
SMCHD1-204ENST00000581226 TMEM238LA0A1B0GVL6 79 aa7.93□□□□□ -1.14
SMCHD1-204ENST00000581226 COL8A1P27658 744 aa7.93□□□□□ -1.14
SMCHD1-204ENST00000581226 PRPF40BQ6NWY9 871 aaKnown RBP7.93□□□□□ -1.14
SMCHD1-204ENST00000581226 FAM117BQ6P1L5 589 aa7.93□□□□□ -1.14
SMCHD1-204ENST00000581226 DTWD1Q8N5C7 304 aa7.93□□□□□ -1.14
SMCHD1-204ENST00000581226 GLIS3Q8NEA6 775 aa7.93□□□□□ -1.14
SMCHD1-204ENST00000581226 FRMD6Q96NE9 622 aa7.93□□□□□ -1.14
SMCHD1-204ENST00000581226 H3BRJ5 948 aa7.92□□□□□ -1.14
SMCHD1-204ENST00000581226 GIPC1O14908 333 aa7.92□□□□□ -1.14
SMCHD1-204ENST00000581226 FCGRTP55899 365 aa7.92□□□□□ -1.14
SMCHD1-204ENST00000581226 VN1R5Q7Z5H4 357 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 89.6 ms