RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 PDS5AQ29RF7 1337 aaKnown RBP18.57■□□□□ 0.56
SS18-215ENST00000580642 TRIM6-TRIM34B2RNG4 842 aa18.57■□□□□ 0.56
SS18-215ENST00000580642 ADORA1P30542 326 aa18.57■□□□□ 0.56
SS18-215ENST00000580642 LRRFIP1Q32MZ4 808 aaKnown RBP18.57■□□□□ 0.56
SS18-215ENST00000580642 TSHZ3Q63HK5 1081 aa18.57■□□□□ 0.56
SS18-215ENST00000580642 GGA1Q9UJY5 639 aa18.57■□□□□ 0.56
SS18-215ENST00000580642 LRRC37AA6NMS7 1700 aa18.57■□□□□ 0.56
SS18-215ENST00000580642 PSDA5PKW4 1024 aaPredicted RBP18.56■□□□□ 0.56
SS18-215ENST00000580642 TTF1Q15361 905 aaPredicted RBP18.56■□□□□ 0.56
SS18-215ENST00000580642 SOGA3Q5TF21 947 aa18.56■□□□□ 0.56
SS18-215ENST00000580642 PRPF40BQ6NWY9 871 aaKnown RBP18.56■□□□□ 0.56
SS18-215ENST00000580642 FBXO33Q7Z6M2 555 aa18.56■□□□□ 0.56
SS18-215ENST00000580642 TTLL6Q8N841 843 aa18.56■□□□□ 0.56
SS18-215ENST00000580642 BOLA2Q9H3K6 86 aa18.56■□□□□ 0.56
SS18-215ENST00000580642 COL11A2P13942 1736 aaPredicted RBP18.55■□□□□ 0.56
SS18-215ENST00000580642 GPSM2P81274 684 aa18.55■□□□□ 0.56
SS18-215ENST00000580642 C7orf43Q8WVR3 580 aa18.55■□□□□ 0.56
SS18-215ENST00000580642 NSFL1CQ9UNZ2 370 aaKnown RBP18.55■□□□□ 0.56
SS18-215ENST00000580642 SPEF2Q9C093 1822 aa18.55■□□□□ 0.56
SS18-215ENST00000580642 IRS2Q9Y4H2 1338 aa18.54■□□□□ 0.56
SS18-215ENST00000580642 CHRNA5P30532 468 aa18.54■□□□□ 0.56
SS18-215ENST00000580642 HIBADHP31937 336 aaKnown RBP18.54■□□□□ 0.56
SS18-215ENST00000580642 TMED8Q6PL24 325 aaPredicted RBP18.54■□□□□ 0.56
SS18-215ENST00000580642 VPS37DQ86XT2 251 aa18.54■□□□□ 0.56
SS18-215ENST00000580642 MPNDQ8N594 471 aa18.54■□□□□ 0.56
SS18-215ENST00000580642 RILPL2Q969X0 211 aa18.54■□□□□ 0.56
SS18-215ENST00000580642 FAM84BQ96KN1 310 aaPredicted RBP18.54■□□□□ 0.56
SS18-215ENST00000580642 MED23Q9ULK4 1368 aa18.54■□□□□ 0.56
SS18-215ENST00000580642 A0A1B0GUL6 1792 aa18.53■□□□□ 0.56
SS18-215ENST00000580642 EPB41L2O43491 1005 aaKnown RBP18.53■□□□□ 0.56
SS18-215ENST00000580642 PHKA1P46020 1223 aa18.53■□□□□ 0.56
SS18-215ENST00000580642 KBTBD3Q8NAB2 608 aa18.53■□□□□ 0.56
SS18-215ENST00000580642 TBC1D16Q8TBP0 767 aa18.53■□□□□ 0.56
SS18-215ENST00000580642 EYA3Q99504 573 aa18.53■□□□□ 0.56
SS18-215ENST00000580642 RTFDC1Q9BY42 306 aaPredicted RBP18.53■□□□□ 0.56
SS18-215ENST00000580642 PAG1Q9NWQ8 432 aa18.53■□□□□ 0.56
SS18-215ENST00000580642 PIM2Q9P1W9 311 aa18.53■□□□□ 0.56
SS18-215ENST00000580642 DENND2AQ9ULE3 1009 aa18.53■□□□□ 0.56
SS18-215ENST00000580642 DLEC1Q9Y238 1755 aa18.53■□□□□ 0.56
SS18-215ENST00000580642 TAF1P21675 1872 aa18.52■□□□□ 0.56
SS18-215ENST00000580642 UFL1O94874 794 aa18.52■□□□□ 0.56
SS18-215ENST00000580642 DPEP1P16444 411 aa18.52■□□□□ 0.56
SS18-215ENST00000580642 KCNA3P22001 575 aa18.52■□□□□ 0.56
SS18-215ENST00000580642 DPP8Q6V1X1 898 aaPredicted RBP18.52■□□□□ 0.56
SS18-215ENST00000580642 TBC1D9Q6ZT07 1266 aa18.52■□□□□ 0.56
SS18-215ENST00000580642 ZNF804AQ7Z570 1209 aa18.52■□□□□ 0.56
SS18-215ENST00000580642 RTKN2Q8IZC4 609 aa18.52■□□□□ 0.56
SS18-215ENST00000580642 SUPT20HQ8NEM7 779 aa18.52■□□□□ 0.56
SS18-215ENST00000580642 RUFY2Q8WXA3 655 aa18.52■□□□□ 0.56
SS18-215ENST00000580642 VPS33BQ9H267 617 aa18.52■□□□□ 0.56
SS18-215ENST00000580642 ZFYP08048 801 aaPredicted RBP18.51■□□□□ 0.55
SS18-215ENST00000580642 CHMLP26374 656 aa18.51■□□□□ 0.55
SS18-215ENST00000580642 BCAMP50895 628 aa18.51■□□□□ 0.55
SS18-215ENST00000580642 SPATA5Q8NB90 893 aa18.51■□□□□ 0.55
SS18-215ENST00000580642 UPF2Q9HAU5 1272 aaKnown RBP18.51■□□□□ 0.55
SS18-215ENST00000580642 MCAMP43121 646 aa18.5■□□□□ 0.55
SS18-215ENST00000580642 ZSCAN25Q6NSZ9 544 aa18.5■□□□□ 0.55
SS18-215ENST00000580642 DNAJC2Q99543 621 aaKnown RBP18.5■□□□□ 0.55
SS18-215ENST00000580642 FSD1Q9BTV5 496 aa18.5■□□□□ 0.55
SS18-215ENST00000580642 HMG20BQ9P0W2 317 aa18.5■□□□□ 0.55
SS18-215ENST00000580642 LTBP1Q14766 1721 aa18.49■□□□□ 0.55
SS18-215ENST00000580642 A0A0G2JLW4 131 aa18.49■□□□□ 0.55
SS18-215ENST00000580642 SNAP23O00161 211 aa18.49■□□□□ 0.55
SS18-215ENST00000580642 FKBP4Q02790 459 aaKnown RBP eCLIP18.49■□□□□ 0.55
SS18-215ENST00000580642 RASGRF1Q13972 1273 aa18.49■□□□□ 0.55
SS18-215ENST00000580642 CCDC93Q567U6 631 aa18.49■□□□□ 0.55
SS18-215ENST00000580642 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.49■□□□□ 0.55
SS18-215ENST00000580642 COA1Q9GZY4 146 aa18.49■□□□□ 0.55
SS18-215ENST00000580642 DIAPH3Q9NSV4 1193 aa18.49■□□□□ 0.55
SS18-215ENST00000580642 POLLQ9UGP5 575 aa18.49■□□□□ 0.55
SS18-215ENST00000580642 RAD50Q92878 1312 aa18.49■□□□□ 0.55
SS18-215ENST00000580642 C6orf229H3BNL8 230 aa18.48■□□□□ 0.55
SS18-215ENST00000580642 GOLIM4O00461 696 aa18.48■□□□□ 0.55
SS18-215ENST00000580642 REC8O95072 547 aa18.48■□□□□ 0.55
SS18-215ENST00000580642 IL1R1P14778 569 aa18.48■□□□□ 0.55
SS18-215ENST00000580642 GYG1P46976 350 aa18.48■□□□□ 0.55
SS18-215ENST00000580642 SCARF1Q14162 830 aa18.48■□□□□ 0.55
SS18-215ENST00000580642 DALRD3Q5D0E6 543 aaKnown RBP18.48■□□□□ 0.55
SS18-215ENST00000580642 ZGPATQ8N5A5 531 aaKnown RBP18.48■□□□□ 0.55
SS18-215ENST00000580642 TDRD7Q8NHU6 1098 aaKnown RBP18.48■□□□□ 0.55
SS18-215ENST00000580642 PSMD1Q99460 953 aa18.48■□□□□ 0.55
SS18-215ENST00000580642 ZC3H12CQ9C0D7 883 aaKnown RBP18.48■□□□□ 0.55
SS18-215ENST00000580642 SNRKQ9NRH2 765 aa18.48■□□□□ 0.55
SS18-215ENST00000580642 SNED1Q8TER0 1413 aa18.48■□□□□ 0.55
SS18-215ENST00000580642 ZAP70P43403 619 aa18.47■□□□□ 0.55
SS18-215ENST00000580642 SALL1Q9NSC2 1324 aa18.47■□□□□ 0.55
SS18-215ENST00000580642 MAP4K4O95819 1239 aaPredicted RBP18.46■□□□□ 0.55
SS18-215ENST00000580642 CYP2E1P05181 493 aaPredicted RBP18.46■□□□□ 0.55
SS18-215ENST00000580642 WASHC4Q2M389 1173 aa18.46■□□□□ 0.55
SS18-215ENST00000580642 WDR66Q8TBY9 1149 aa18.46■□□□□ 0.55
SS18-215ENST00000580642 ESYT1Q9BSJ8 1104 aa18.46■□□□□ 0.55
SS18-215ENST00000580642 FRAT2O75474 233 aaPredicted RBP18.45■□□□□ 0.54
SS18-215ENST00000580642 KLRK1P26718 216 aa18.45■□□□□ 0.54
SS18-215ENST00000580642 MAP3K12Q12852 859 aa18.45■□□□□ 0.54
SS18-215ENST00000580642 CD209Q9NNX6 404 aa18.45■□□□□ 0.54
SS18-215ENST00000580642 HELLSQ9NRZ9 838 aa18.45■□□□□ 0.54
SS18-215ENST00000580642 KIAA1551Q9HCM1 1747 aa18.45■□□□□ 0.54
SS18-215ENST00000580642 SLX4Q8IY92 1834 aa18.44■□□□□ 0.54
SS18-215ENST00000580642 DUOX1Q9NRD9 1551 aa18.44■□□□□ 0.54
SS18-215ENST00000580642 WTIPA6NIX2 430 aaPredicted RBP18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 192.5 ms