RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 COG6Q9Y2V7 657 aa12.77□□□□□ -0.37
SS18-210ENST00000578700 DUOX1Q9NRD9 1551 aa12.77□□□□□ -0.37
SS18-210ENST00000578700 SLC10A3P09131 477 aa12.76□□□□□ -0.37
SS18-210ENST00000578700 RPS8P62241 208 aaKnown RBP12.76□□□□□ -0.37
SS18-210ENST00000578700 SF3B3Q15393 1217 aaKnown RBP12.76□□□□□ -0.37
SS18-210ENST00000578700 ANKRD13DQ6ZTN6 518 aa12.76□□□□□ -0.37
SS18-210ENST00000578700 PLBD2Q8NHP8 589 aa12.76□□□□□ -0.37
SS18-210ENST00000578700 TBC1D16Q8TBP0 767 aa12.76□□□□□ -0.37
SS18-210ENST00000578700 CLUAP1Q96AJ1 413 aa12.76□□□□□ -0.37
SS18-210ENST00000578700 CDCA5Q96FF9 252 aa12.76□□□□□ -0.37
SS18-210ENST00000578700 STK31Q9BXU1 1019 aa12.76□□□□□ -0.37
SS18-210ENST00000578700 ANKIB1Q9P2G1 1089 aa12.76□□□□□ -0.37
SS18-210ENST00000578700 DDX19BQ9UMR2 479 aa12.76□□□□□ -0.37
SS18-210ENST00000578700 SCAF8Q9UPN6 1271 aaKnown RBP12.76□□□□□ -0.37
SS18-210ENST00000578700 IRS4O14654 1257 aaPredicted RBP12.75□□□□□ -0.37
SS18-210ENST00000578700 VIL1P09327 827 aaKnown RBP12.75□□□□□ -0.37
SS18-210ENST00000578700 SCARF1Q14162 830 aa12.75□□□□□ -0.37
SS18-210ENST00000578700 MVPQ14764 893 aaKnown RBP12.75□□□□□ -0.37
SS18-210ENST00000578700 HDGFL1Q5TGJ6 251 aa12.75□□□□□ -0.37
SS18-210ENST00000578700 ANGEL2Q5VTE6 544 aaKnown RBP12.75□□□□□ -0.37
SS18-210ENST00000578700 CTU1Q7Z7A3 348 aaKnown RBP12.75□□□□□ -0.37
SS18-210ENST00000578700 MRPL50Q8N5N7 158 aaKnown RBP12.75□□□□□ -0.37
SS18-210ENST00000578700 TSPYL6Q8N831 410 aa12.75□□□□□ -0.37
SS18-210ENST00000578700 RTL9Q8NET4 1388 aa12.75□□□□□ -0.37
SS18-210ENST00000578700 HDAC9Q9UKV0 1011 aa12.75□□□□□ -0.37
SS18-210ENST00000578700 UFL1O94874 794 aa12.74□□□□□ -0.37
SS18-210ENST00000578700 TRIM27P14373 513 aa12.74□□□□□ -0.37
SS18-210ENST00000578700 MOB2Q70IA6 237 aa12.74□□□□□ -0.37
SS18-210ENST00000578700 CENPQQ7L2Z9 268 aaPredicted RBP12.74□□□□□ -0.37
SS18-210ENST00000578700 ITPRIPQ8IWB1 547 aa12.74□□□□□ -0.37
SS18-210ENST00000578700 CCDC85AQ96PX6 553 aaPredicted RBP12.74□□□□□ -0.37
SS18-210ENST00000578700 ISCA1Q9BUE6 129 aa12.74□□□□□ -0.37
SS18-210ENST00000578700 SEC31BQ9NQW1 1179 aa12.74□□□□□ -0.37
SS18-210ENST00000578700 TBC1D8O95759 1140 aa12.73□□□□□ -0.37
SS18-210ENST00000578700 CCDC30Q5VVM6 783 aa12.73□□□□□ -0.37
SS18-210ENST00000578700 PRAMEF18Q5VWM3 479 aa12.73□□□□□ -0.37
SS18-210ENST00000578700 RIC3Q7Z5B4 369 aa12.73□□□□□ -0.37
SS18-210ENST00000578700 RASAL3Q86YV0 1011 aa12.73□□□□□ -0.37
SS18-210ENST00000578700 JARID2Q92833 1246 aaPredicted RBP12.73□□□□□ -0.37
SS18-210ENST00000578700 GGA1Q9UJY5 639 aa12.73□□□□□ -0.37
SS18-210ENST00000578700 SCN9AQ15858 1988 aa12.72□□□□□ -0.37
SS18-210ENST00000578700 PSME4Q14997 1843 aa12.72□□□□□ -0.37
SS18-210ENST00000578700 PTPRCP08575 1304 aa12.72□□□□□ -0.37
SS18-210ENST00000578700 UBE2Q2LH0YL09 131 aa12.72□□□□□ -0.37
SS18-210ENST00000578700 MKRN3Q13064 507 aaKnown RBP12.72□□□□□ -0.37
SS18-210ENST00000578700 TTLL12Q14166 644 aaPredicted RBP12.72□□□□□ -0.37
SS18-210ENST00000578700 RSBN1LQ6PCB5 846 aaPredicted RBP12.72□□□□□ -0.37
SS18-210ENST00000578700 FBXW7Q969H0 707 aa12.72□□□□□ -0.37
SS18-210ENST00000578700 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.72□□□□□ -0.37
SS18-210ENST00000578700 DBF4Q9UBU7 674 aaPredicted RBP12.72□□□□□ -0.37
SS18-210ENST00000578700 HPS5Q9UPZ3 1129 aa12.72□□□□□ -0.37
SS18-210ENST00000578700 HOXB7P09629 217 aa12.71□□□□□ -0.37
SS18-210ENST00000578700 SLC4A2P04920 1241 aa12.7□□□□□ -0.38
SS18-210ENST00000578700 USP17L8P0C7I0 530 aa12.7□□□□□ -0.38
SS18-210ENST00000578700 REM2Q8IYK8 340 aaPredicted RBP12.7□□□□□ -0.38
SS18-210ENST00000578700 AGBL3Q8NEM8 1001 aa12.7□□□□□ -0.38
SS18-210ENST00000578700 ZNF296Q8WUU4 475 aaPredicted RBP12.7□□□□□ -0.38
SS18-210ENST00000578700 CNKSR2Q8WXI2 1034 aa12.7□□□□□ -0.38
SS18-210ENST00000578700 MYD88Q99836 296 aa12.7□□□□□ -0.38
SS18-210ENST00000578700 RWDD1Q9H446 243 aaPredicted RBP12.7□□□□□ -0.38
SS18-210ENST00000578700 MYOZ2Q9NPC6 264 aa12.7□□□□□ -0.38
SS18-210ENST00000578700 HYPKQ9NX55 129 aa12.7□□□□□ -0.38
SS18-210ENST00000578700 CENPFP49454 3210 aa12.69□□□□□ -0.38
SS18-210ENST00000578700 RLBP1P12271 317 aa12.69□□□□□ -0.38
SS18-210ENST00000578700 ZNF280AP59817 542 aaPredicted RBP12.69□□□□□ -0.38
SS18-210ENST00000578700 PRKG1Q13976 671 aa12.69□□□□□ -0.38
SS18-210ENST00000578700 CCDC152Q4G0S7 254 aa12.69□□□□□ -0.38
SS18-210ENST00000578700 PRPF38BQ5VTL8 546 aaKnown RBP12.69□□□□□ -0.38
SS18-210ENST00000578700 TMEM57Q8N5G2 664 aa12.69□□□□□ -0.38
SS18-210ENST00000578700 ZBTB38Q8NAP3 1195 aaPredicted RBP12.69□□□□□ -0.38
SS18-210ENST00000578700 PODXL2Q9NZ53 605 aa12.69□□□□□ -0.38
SS18-210ENST00000578700 MKI67P46013 3256 aaKnown RBP12.68□□□□□ -0.38
SS18-210ENST00000578700 USP17L3A6NCW0 530 aa12.68□□□□□ -0.38
SS18-210ENST00000578700 USP17L4A6NCW7 530 aa12.68□□□□□ -0.38
SS18-210ENST00000578700 PKN2Q16513 984 aaKnown RBP12.68□□□□□ -0.38
SS18-210ENST00000578700 USP17L1Q7RTZ2 530 aa12.68□□□□□ -0.38
SS18-210ENST00000578700 ANKRD18AQ8IVF6 992 aa12.68□□□□□ -0.38
SS18-210ENST00000578700 MXD3Q9BW11 206 aa12.68□□□□□ -0.38
SS18-210ENST00000578700 PHAXQ9H814 394 aaKnown RBP12.68□□□□□ -0.38
SS18-210ENST00000578700 COL4A1P02462 1669 aa12.67□□□□□ -0.38
SS18-210ENST00000578700 WTIPA6NIX2 430 aaPredicted RBP12.67□□□□□ -0.38
SS18-210ENST00000578700 GPR25O00155 361 aa12.67□□□□□ -0.38
SS18-210ENST00000578700 PDE8AO60658 829 aa12.67□□□□□ -0.38
SS18-210ENST00000578700 HSP90B1P14625 803 aaKnown RBP12.67□□□□□ -0.38
SS18-210ENST00000578700 ATP2B4P23634 1241 aa12.67□□□□□ -0.38
SS18-210ENST00000578700 HOXD11P31277 338 aaPredicted RBP12.67□□□□□ -0.38
SS18-210ENST00000578700 FKBP1BP68106 108 aa12.67□□□□□ -0.38
SS18-210ENST00000578700 TRIM28Q13263 835 aaKnown RBP12.67□□□□□ -0.38
SS18-210ENST00000578700 NBPF9Q3BBW0 867 aa12.67□□□□□ -0.38
SS18-210ENST00000578700 TNNQ9UQP3 1299 aa12.67□□□□□ -0.38
SS18-210ENST00000578700 HTTP42858 3142 aa12.67□□□□□ -0.38
SS18-210ENST00000578700 NF2P35240 595 aa12.66□□□□□ -0.38
SS18-210ENST00000578700 GMLQ99445 158 aa12.66□□□□□ -0.38
SS18-210ENST00000578700 PAPPA2Q9BXP8 1791 aa12.66□□□□□ -0.38
SS18-210ENST00000578700 XDHP47989 1333 aa12.65□□□□□ -0.38
SS18-210ENST00000578700 ZNF609O15014 1411 aa12.65□□□□□ -0.38
SS18-210ENST00000578700 CCT4P50991 539 aaKnown RBP12.65□□□□□ -0.38
SS18-210ENST00000578700 PODNQ7Z5L7 613 aa12.65□□□□□ -0.38
SS18-210ENST00000578700 OGFOD1Q8N543 542 aa12.65□□□□□ -0.38
SS18-210ENST00000578700 CWC25Q9NXE8 425 aaPredicted RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms