RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 MICALL2Q8IY33 904 aa24.34■■□□□ 1.49
SS18-209ENST00000578595 COA1Q9GZY4 146 aa24.34■■□□□ 1.49
SS18-209ENST00000578595 ADARB2Q9NS39 739 aaKnown RBP24.34■■□□□ 1.49
SS18-209ENST00000578595 MROH5Q6ZUA9 1318 aa24.34■■□□□ 1.49
SS18-209ENST00000578595 ZNF646O15015 1829 aaPredicted RBP24.33■■□□□ 1.49
SS18-209ENST00000578595 H7C1D1 291 aa24.33■■□□□ 1.49
SS18-209ENST00000578595 LRRC24Q50LG9 513 aa24.33■■□□□ 1.49
SS18-209ENST00000578595 SIL1Q9H173 461 aa24.33■■□□□ 1.49
SS18-209ENST00000578595 CNOT7Q9UIV1 285 aaKnown RBP24.33■■□□□ 1.49
SS18-209ENST00000578595 RCAN3Q9UKA8 241 aa24.33■■□□□ 1.49
SS18-209ENST00000578595 ZNF804AQ7Z570 1209 aa24.32■■□□□ 1.48
SS18-209ENST00000578595 POLR2AP24928 1970 aaKnown RBP24.32■■□□□ 1.48
SS18-209ENST00000578595 SHTN1A0MZ66 631 aa24.31■■□□□ 1.48
SS18-209ENST00000578595 USP17L3A6NCW0 530 aa24.31■■□□□ 1.48
SS18-209ENST00000578595 USP17L4A6NCW7 530 aa24.31■■□□□ 1.48
SS18-209ENST00000578595 RPS12P25398 132 aaKnown RBP24.31■■□□□ 1.48
SS18-209ENST00000578595 USP50Q70EL3 339 aaPredicted RBP24.31■■□□□ 1.48
SS18-209ENST00000578595 USP17L1Q7RTZ2 530 aa24.31■■□□□ 1.48
SS18-209ENST00000578595 GNAI2P04899 355 aa24.3■■□□□ 1.48
SS18-209ENST00000578595 RBM26Q5T8P6 1007 aaKnown RBP24.3■■□□□ 1.48
SS18-209ENST00000578595 MAP1SQ66K74 1059 aaPredicted RBP24.3■■□□□ 1.48
SS18-209ENST00000578595 RIPOR2Q9Y4F9 1068 aa24.3■■□□□ 1.48
SS18-209ENST00000578595 APLP1P51693 650 aa24.29■■□□□ 1.48
SS18-209ENST00000578595 RSBN1LQ6PCB5 846 aaPredicted RBP24.29■■□□□ 1.48
SS18-209ENST00000578595 DPF2Q92785 391 aa24.29■■□□□ 1.48
SS18-209ENST00000578595 TRPM7Q96QT4 1865 aa24.29■■□□□ 1.48
SS18-209ENST00000578595 EYA2O00167 538 aa24.28■■□□□ 1.48
SS18-209ENST00000578595 SRGAP3O43295 1099 aa24.28■■□□□ 1.48
SS18-209ENST00000578595 VIL1P09327 827 aaKnown RBP24.28■■□□□ 1.48
SS18-209ENST00000578595 RLBP1P12271 317 aa24.28■■□□□ 1.48
SS18-209ENST00000578595 UBE4AQ14139 1066 aa24.28■■□□□ 1.48
SS18-209ENST00000578595 TBC1D10BQ4KMP7 808 aaPredicted RBP24.28■■□□□ 1.48
SS18-209ENST00000578595 MS4A1P11836 297 aa24.27■■□□□ 1.48
SS18-209ENST00000578595 RFX5P48382 616 aaPredicted RBP24.27■■□□□ 1.48
SS18-209ENST00000578595 GTF2IP78347 998 aa24.27■■□□□ 1.48
SS18-209ENST00000578595 PTPN12Q05209 780 aaKnown RBP24.27■■□□□ 1.48
SS18-209ENST00000578595 VPS37DQ86XT2 251 aa24.27■■□□□ 1.48
SS18-209ENST00000578595 TRPM4Q8TD43 1214 aa24.27■■□□□ 1.48
SS18-209ENST00000578595 PANK1Q8TE04 598 aa24.27■■□□□ 1.48
SS18-209ENST00000578595 CD209Q9NNX6 404 aa24.27■■□□□ 1.48
SS18-209ENST00000578595 PA2G4Q9UQ80 394 aaKnown RBP24.27■■□□□ 1.48
SS18-209ENST00000578595 TTLL5Q6EMB2 1281 aa24.26■■□□□ 1.47
SS18-209ENST00000578595 SAMD7Q7Z3H4 446 aa24.26■■□□□ 1.47
SS18-209ENST00000578595 MXD3Q9BW11 206 aa24.26■■□□□ 1.47
SS18-209ENST00000578595 GYG1P46976 350 aa24.25■■□□□ 1.47
SS18-209ENST00000578595 HTRA3P83110 453 aa24.25■■□□□ 1.47
SS18-209ENST00000578595 C15orf52Q6ZUT6 534 aaKnown RBP24.25■■□□□ 1.47
SS18-209ENST00000578595 CNTROBQ8N137 903 aa24.25■■□□□ 1.47
SS18-209ENST00000578595 AGBL3Q8NEM8 1001 aa24.25■■□□□ 1.47
SS18-209ENST00000578595 C1orf115Q9H7X2 142 aa24.25■■□□□ 1.47
SS18-209ENST00000578595 ARAP2Q8WZ64 1704 aa24.24■■□□□ 1.47
SS18-209ENST00000578595 PDE8BO95263 885 aa24.24■■□□□ 1.47
SS18-209ENST00000578595 KIF4BQ2VIQ3 1234 aa24.24■■□□□ 1.47
SS18-209ENST00000578595 STRIP1Q5VSL9 837 aa24.24■■□□□ 1.47
SS18-209ENST00000578595 JAG2Q9Y219 1238 aa24.24■■□□□ 1.47
SS18-209ENST00000578595 MYO3BQ8WXR4 1341 aa24.24■■□□□ 1.47
SS18-209ENST00000578595 FRAT2O75474 233 aaPredicted RBP24.23■■□□□ 1.47
SS18-209ENST00000578595 USP17L8P0C7I0 530 aa24.23■■□□□ 1.47
SS18-209ENST00000578595 PUM3Q15397 648 aaKnown RBP24.23■■□□□ 1.47
SS18-209ENST00000578595 CAVIN4Q5BKX8 364 aa24.23■■□□□ 1.47
SS18-209ENST00000578595 DACT2Q5SW24 774 aa24.23■■□□□ 1.47
SS18-209ENST00000578595 CEP126Q9P2H0 1117 aa24.23■■□□□ 1.47
SS18-209ENST00000578595 IRS2Q9Y4H2 1338 aa24.23■■□□□ 1.47
SS18-209ENST00000578595 IFIT1P09914 478 aaKnown RBP24.22■■□□□ 1.47
SS18-209ENST00000578595 SLC5A1P13866 664 aa24.22■■□□□ 1.47
SS18-209ENST00000578595 HIBADHP31937 336 aaKnown RBP24.22■■□□□ 1.47
SS18-209ENST00000578595 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.22■■□□□ 1.47
SS18-209ENST00000578595 ZNF609O15014 1411 aa24.21■■□□□ 1.47
SS18-209ENST00000578595 CIAO1O76071 339 aa24.21■■□□□ 1.47
SS18-209ENST00000578595 OGFOD1Q8N543 542 aa24.21■■□□□ 1.47
SS18-209ENST00000578595 VGLL2Q8N8G2 317 aa24.21■■□□□ 1.47
SS18-209ENST00000578595 FBXO3Q9UK99 471 aa24.21■■□□□ 1.47
SS18-209ENST00000578595 IQSEC3Q9UPP2 1182 aaPredicted RBP24.21■■□□□ 1.47
SS18-209ENST00000578595 EGFRP00533 1210 aa24.2■■□□□ 1.46
SS18-209ENST00000578595 IL15P40933 162 aaPredicted RBP24.2■■□□□ 1.46
SS18-209ENST00000578595 HIRAP54198 1017 aaPredicted RBP24.2■■□□□ 1.46
SS18-209ENST00000578595 MTX1Q13505 466 aa24.2■■□□□ 1.46
SS18-209ENST00000578595 ATG9AQ7Z3C6 839 aa24.2■■□□□ 1.46
SS18-209ENST00000578595 KIAA0825Q8IV33 1275 aa24.2■■□□□ 1.46
SS18-209ENST00000578595 COPRSQ9NQ92 184 aa24.2■■□□□ 1.46
SS18-209ENST00000578595 IL1R1P14778 569 aa24.19■■□□□ 1.46
SS18-209ENST00000578595 ATP2B3Q16720 1220 aa24.19■■□□□ 1.46
SS18-209ENST00000578595 FAM84BQ96KN1 310 aaPredicted RBP24.19■■□□□ 1.46
SS18-209ENST00000578595 HDAC9Q9UKV0 1011 aa24.19■■□□□ 1.46
SS18-209ENST00000578595 COG6Q9Y2V7 657 aa24.19■■□□□ 1.46
SS18-209ENST00000578595 ECM29Q5VYK3 1845 aa24.19■■□□□ 1.46
SS18-209ENST00000578595 PNMA6EA0A0J9YXQ4 647 aa24.18■■□□□ 1.46
SS18-209ENST00000578595 F8W031 263 aaPredicted RBP24.18■■□□□ 1.46
SS18-209ENST00000578595 CHAF1AQ13111 956 aaPredicted RBP24.18■■□□□ 1.46
SS18-209ENST00000578595 MYOZ2Q9NPC6 264 aa24.18■■□□□ 1.46
SS18-209ENST00000578595 PASKQ96RG2 1323 aa24.17■■□□□ 1.46
SS18-209ENST00000578595 TRAF5O00463 557 aa24.17■■□□□ 1.46
SS18-209ENST00000578595 ITGBL1O95965 494 aaPredicted RBP24.17■■□□□ 1.46
SS18-209ENST00000578595 OS9Q13438 667 aaPredicted RBP24.17■■□□□ 1.46
SS18-209ENST00000578595 ZC3H15Q8WU90 426 aaKnown RBP24.17■■□□□ 1.46
SS18-209ENST00000578595 LPIN2Q92539 896 aa24.17■■□□□ 1.46
SS18-209ENST00000578595 DCPSQ96C86 337 aaKnown RBP24.17■■□□□ 1.46
SS18-209ENST00000578595 GMLQ99445 158 aa24.17■■□□□ 1.46
SS18-209ENST00000578595 GLIS2Q9BZE0 524 aaPredicted RBP24.17■■□□□ 1.46
SS18-209ENST00000578595 ZNF408Q9H9D4 720 aa24.17■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms