RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 RASSF7Q02833 373 aa9.59□□□□□ -0.87
NUP88-213ENST00000576862 DMRTC2Q8IXT2 367 aaPredicted RBP9.59□□□□□ -0.87
NUP88-213ENST00000576862 TMEM102Q8N9M5 508 aaPredicted RBP9.58□□□□□ -0.88
NUP88-213ENST00000576862 CCDC74AQ96AQ1 378 aa9.58□□□□□ -0.88
NUP88-213ENST00000576862 NPHS2Q9NP85 383 aa9.58□□□□□ -0.88
NUP88-213ENST00000576862 NOP53Q9NZM5 478 aaKnown RBP9.58□□□□□ -0.88
NUP88-213ENST00000576862 A0A1W2PP55 124 aa9.57□□□□□ -0.88
NUP88-213ENST00000576862 FAM229AH3BQW9 127 aa9.57□□□□□ -0.88
NUP88-213ENST00000576862 PDE2AO00408 941 aaPredicted RBP9.57□□□□□ -0.88
NUP88-213ENST00000576862 TRIM26Q12899 539 aaPredicted RBP9.57□□□□□ -0.88
NUP88-213ENST00000576862 ENOX2Q16206 610 aaKnown RBP9.57□□□□□ -0.88
NUP88-213ENST00000576862 TRAPPC3LQ5T215 181 aa9.57□□□□□ -0.88
NUP88-213ENST00000576862 WFDC8Q8IUA0 241 aa9.57□□□□□ -0.88
NUP88-213ENST00000576862 IL22RA1Q8N6P7 574 aa9.57□□□□□ -0.88
NUP88-213ENST00000576862 NXPE3Q969Y0 559 aa9.57□□□□□ -0.88
NUP88-213ENST00000576862 LACRTQ9GZZ8 138 aa9.57□□□□□ -0.88
NUP88-213ENST00000576862 A0A0A0MRY4 1105 aa9.56□□□□□ -0.88
NUP88-213ENST00000576862 DCAF5Q96JK2 942 aa9.56□□□□□ -0.88
NUP88-213ENST00000576862 PNMA6FA0A0J9YX94 578 aa9.55□□□□□ -0.88
NUP88-213ENST00000576862 ANKRD33BA6NCL7 494 aa9.55□□□□□ -0.88
NUP88-213ENST00000576862 P4HBP07237 508 aaKnown RBP9.55□□□□□ -0.88
NUP88-213ENST00000576862 CCDC27Q2M243 656 aa9.55□□□□□ -0.88
NUP88-213ENST00000576862 KIAA0319Q5VV43 1072 aa9.55□□□□□ -0.88
NUP88-213ENST00000576862 SETDB2Q96T68 719 aa9.55□□□□□ -0.88
NUP88-213ENST00000576862 ADAM19Q9H013 955 aa9.55□□□□□ -0.88
NUP88-213ENST00000576862 SPDYE3A6NKU9 549 aa9.54□□□□□ -0.88
NUP88-213ENST00000576862 MAPK8P45983 427 aa9.54□□□□□ -0.88
NUP88-213ENST00000576862 CACTIN-AS1Q8N1I8 211 aa9.54□□□□□ -0.88
NUP88-213ENST00000576862 EPS8L3Q8TE67 593 aaKnown RBP9.54□□□□□ -0.88
NUP88-213ENST00000576862 TCF12Q99081 682 aa9.54□□□□□ -0.88
NUP88-213ENST00000576862 BHLHE41Q9C0J9 482 aaPredicted RBP9.54□□□□□ -0.88
NUP88-213ENST00000576862 SH2B1Q9NRF2 756 aaPredicted RBP9.54□□□□□ -0.88
NUP88-213ENST00000576862 KRBA1A5PL33 1030 aa9.53□□□□□ -0.88
NUP88-213ENST00000576862 METTL12A8MUP2 240 aa9.53□□□□□ -0.88
NUP88-213ENST00000576862 DEAF1O75398 565 aaPredicted RBP9.53□□□□□ -0.88
NUP88-213ENST00000576862 PTPRAP18433 802 aa9.53□□□□□ -0.88
NUP88-213ENST00000576862 EPHA1P21709 976 aa9.53□□□□□ -0.88
NUP88-213ENST00000576862 CDC27P30260 824 aa9.53□□□□□ -0.88
NUP88-213ENST00000576862 PI16Q6UXB8 463 aa9.53□□□□□ -0.88
NUP88-213ENST00000576862 NPAS4Q8IUM7 802 aa9.53□□□□□ -0.88
NUP88-213ENST00000576862 FMR1NBQ8N0W7 255 aaPredicted RBP9.53□□□□□ -0.88
NUP88-213ENST00000576862 WWC3Q9ULE0 1092 aa9.53□□□□□ -0.88
NUP88-213ENST00000576862 GDF11O95390 407 aa9.52□□□□□ -0.89
NUP88-213ENST00000576862 SPATA31C1P0DKV0 1188 aa9.52□□□□□ -0.89
NUP88-213ENST00000576862 TRIM28Q13263 835 aaKnown RBP9.52□□□□□ -0.89
NUP88-213ENST00000576862 ALYREFQ86V81 257 aaKnown RBP9.52□□□□□ -0.89
NUP88-213ENST00000576862 CCNJLQ8IV13 435 aa9.52□□□□□ -0.89
NUP88-213ENST00000576862 DTWD1Q8N5C7 304 aa9.52□□□□□ -0.89
NUP88-213ENST00000576862 LIN7BQ9HAP6 207 aa9.52□□□□□ -0.89
NUP88-213ENST00000576862 SOX13Q9UN79 622 aa9.52□□□□□ -0.89
NUP88-213ENST00000576862 PPME1Q9Y570 386 aa9.52□□□□□ -0.89
NUP88-213ENST00000576862 LINC01387J3KSC0 135 aa9.51□□□□□ -0.89
NUP88-213ENST00000576862 SETDB1Q15047 1291 aa9.51□□□□□ -0.89
NUP88-213ENST00000576862 TMEM151AQ8N4L1 468 aa9.51□□□□□ -0.89
NUP88-213ENST00000576862 TM4SF5O14894 197 aa9.5□□□□□ -0.89
NUP88-213ENST00000576862 ITGB2P05107 769 aa9.5□□□□□ -0.89
NUP88-213ENST00000576862 GRIA4P48058 902 aa9.5□□□□□ -0.89
NUP88-213ENST00000576862 RAC1P63000 192 aa9.5□□□□□ -0.89
NUP88-213ENST00000576862 COL19A1Q14993 1142 aa9.5□□□□□ -0.89
NUP88-213ENST00000576862 PRRT3Q5FWE3 981 aa9.5□□□□□ -0.89
NUP88-213ENST00000576862 TXNDC11Q6PKC3 985 aa9.5□□□□□ -0.89
NUP88-213ENST00000576862 FBXO11Q86XK2 927 aa9.5□□□□□ -0.89
NUP88-213ENST00000576862 GLIS3Q8NEA6 775 aa9.5□□□□□ -0.89
NUP88-213ENST00000576862 BSNDQ8WZ55 320 aa9.5□□□□□ -0.89
NUP88-213ENST00000576862 EHD4Q9H223 541 aa9.5□□□□□ -0.89
NUP88-213ENST00000576862 CDC25BP30305 580 aa9.49□□□□□ -0.89
NUP88-213ENST00000576862 GRM2Q14416 872 aa9.49□□□□□ -0.89
NUP88-213ENST00000576862 GRIK4Q16099 956 aa9.49□□□□□ -0.89
NUP88-213ENST00000576862 TMCO4Q5TGY1 634 aa9.49□□□□□ -0.89
NUP88-213ENST00000576862 VN1R5Q7Z5H4 357 aa9.49□□□□□ -0.89
NUP88-213ENST00000576862 ASAP3Q8TDY4 903 aa9.49□□□□□ -0.89
NUP88-213ENST00000576862 MUC3BQ9H195 1237 aa9.49□□□□□ -0.89
NUP88-213ENST00000576862 GADD45BO75293 160 aaPredicted RBP9.48□□□□□ -0.89
NUP88-213ENST00000576862 ELNP15502 786 aa9.48□□□□□ -0.89
NUP88-213ENST00000576862 SPRED3Q2MJR0 410 aa9.48□□□□□ -0.89
NUP88-213ENST00000576862 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.48□□□□□ -0.89
NUP88-213ENST00000576862 GALNT11Q8NCW6 608 aa9.48□□□□□ -0.89
NUP88-213ENST00000576862 FBF1Q8TES7 1133 aa9.48□□□□□ -0.89
NUP88-213ENST00000576862 ABCB6Q9NP58 842 aa9.48□□□□□ -0.89
NUP88-213ENST00000576862 A0A096LPE4 126 aa9.47□□□□□ -0.89
NUP88-213ENST00000576862 A0A1W2PPZ6 126 aa9.47□□□□□ -0.89
NUP88-213ENST00000576862 H3BRJ5 948 aa9.47□□□□□ -0.89
NUP88-213ENST00000576862 SELPP16109 830 aa9.47□□□□□ -0.89
NUP88-213ENST00000576862 ALG1LQ6GMV1 187 aa9.47□□□□□ -0.89
NUP88-213ENST00000576862 PRPF40BQ6NWY9 871 aaKnown RBP9.47□□□□□ -0.89
NUP88-213ENST00000576862 NLRP2Q9NX02 1062 aa9.47□□□□□ -0.89
NUP88-213ENST00000576862 DLL1O00548 723 aa9.46□□□□□ -0.9
NUP88-213ENST00000576862 FSCN2O14926 492 aa9.46□□□□□ -0.9
NUP88-213ENST00000576862 LDHBP07195 334 aaKnown RBP9.46□□□□□ -0.9
NUP88-213ENST00000576862 HGSNATQ68CP4 663 aa9.46□□□□□ -0.9
NUP88-213ENST00000576862 SHISA2Q6UWI4 295 aa9.46□□□□□ -0.9
NUP88-213ENST00000576862 CARD10Q9BWT7 1032 aa9.46□□□□□ -0.9
NUP88-213ENST00000576862 SRA1Q9HD15 236 aaKnown RBP9.46□□□□□ -0.9
NUP88-213ENST00000576862 CHRNA4P43681 627 aa9.45□□□□□ -0.9
NUP88-213ENST00000576862 PLA2G4EQ3MJ16 856 aa9.45□□□□□ -0.9
NUP88-213ENST00000576862 EAPPQ56P03 285 aaPredicted RBP9.45□□□□□ -0.9
NUP88-213ENST00000576862 FBXO33Q7Z6M2 555 aa9.45□□□□□ -0.9
NUP88-213ENST00000576862 CD163Q86VB7 1156 aa9.45□□□□□ -0.9
NUP88-213ENST00000576862 MAP4K3Q8IVH8 894 aa9.45□□□□□ -0.9
NUP88-213ENST00000576862 BCO2Q9BYV7 579 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms