RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 SCAND2PQ9GZW5 306 aaPredicted RBP11.92□□□□□ -0.5
VPS53-220ENST00000576149 E7EWF7 191 aa11.92□□□□□ -0.5
VPS53-220ENST00000576149 M0R2C6 588 aa11.92□□□□□ -0.5
VPS53-220ENST00000576149 CYP19A1P11511 503 aaPredicted RBP11.92□□□□□ -0.5
VPS53-220ENST00000576149 HSP90AB3PQ58FF7 597 aa11.92□□□□□ -0.5
VPS53-220ENST00000576149 OSBP2Q969R2 916 aa11.92□□□□□ -0.5
VPS53-220ENST00000576149 SLC4A9Q96Q91 983 aa11.92□□□□□ -0.5
VPS53-220ENST00000576149 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.92□□□□□ -0.5
VPS53-220ENST00000576149 GIMAP6Q6P9H5 292 aa11.91□□□□□ -0.5
VPS53-220ENST00000576149 SYNE4Q8N205 404 aa11.91□□□□□ -0.5
VPS53-220ENST00000576149 CCDC39Q9UFE4 941 aa11.91□□□□□ -0.5
VPS53-220ENST00000576149 RIPOR2Q9Y4F9 1068 aa11.91□□□□□ -0.5
VPS53-220ENST00000576149 ITGB4P16144 1822 aa11.91□□□□□ -0.5
VPS53-220ENST00000576149 ABCC12Q96J65 1359 aa11.91□□□□□ -0.5
VPS53-220ENST00000576149 A0A0G2JLW4 131 aa11.91□□□□□ -0.5
VPS53-220ENST00000576149 ZFYP08048 801 aaPredicted RBP11.91□□□□□ -0.5
VPS53-220ENST00000576149 TTLL11Q8NHH1 800 aa11.91□□□□□ -0.5
VPS53-220ENST00000576149 LRP6O75581 1613 aa11.91□□□□□ -0.5
VPS53-220ENST00000576149 HCLS1P14317 486 aaPredicted RBP11.9□□□□□ -0.5
VPS53-220ENST00000576149 GPTP24298 496 aa11.9□□□□□ -0.5
VPS53-220ENST00000576149 SCARF1Q14162 830 aa11.9□□□□□ -0.5
VPS53-220ENST00000576149 ZKSCAN5Q9Y2L8 839 aa11.9□□□□□ -0.5
VPS53-220ENST00000576149 RIC1Q4ADV7 1423 aa11.9□□□□□ -0.5
VPS53-220ENST00000576149 LAMA4Q16363 1823 aa11.9□□□□□ -0.5
VPS53-220ENST00000576149 COL14A1Q05707 1796 aaKnown RBP11.9□□□□□ -0.5
VPS53-220ENST00000576149 ZNF500O60304 480 aaPredicted RBP11.9□□□□□ -0.5
VPS53-220ENST00000576149 ITGA6P23229 1130 aa11.9□□□□□ -0.5
VPS53-220ENST00000576149 MCM5P33992 734 aa11.9□□□□□ -0.5
VPS53-220ENST00000576149 APOBRQ0VD83 1088 aa11.9□□□□□ -0.5
VPS53-220ENST00000576149 RESTQ13127 1097 aa11.9□□□□□ -0.5
VPS53-220ENST00000576149 NSUN7Q8NE18 718 aaKnown RBP11.9□□□□□ -0.5
VPS53-220ENST00000576149 LEO1Q8WVC0 666 aaPredicted RBP11.9□□□□□ -0.5
VPS53-220ENST00000576149 SPATA32Q96LK8 384 aa11.9□□□□□ -0.5
VPS53-220ENST00000576149 NAP1L5Q96NT1 182 aaPredicted RBP11.9□□□□□ -0.5
VPS53-220ENST00000576149 ZSCAN16Q9H4T2 348 aaPredicted RBP11.9□□□□□ -0.5
VPS53-220ENST00000576149 GREM2Q9H772 168 aa11.9□□□□□ -0.5
VPS53-220ENST00000576149 TFIP11Q9UBB9 837 aaKnown RBP11.9□□□□□ -0.5
VPS53-220ENST00000576149 H3BQV1 296 aa11.89□□□□□ -0.51
VPS53-220ENST00000576149 FOXP2O15409 715 aa11.89□□□□□ -0.51
VPS53-220ENST00000576149 ZAP70P43403 619 aa11.89□□□□□ -0.51
VPS53-220ENST00000576149 CTSWP56202 376 aa11.89□□□□□ -0.51
VPS53-220ENST00000576149 ATP2B3Q16720 1220 aa11.89□□□□□ -0.51
VPS53-220ENST00000576149 IFFO2Q5TF58 517 aa11.89□□□□□ -0.51
VPS53-220ENST00000576149 TTLL5Q6EMB2 1281 aa11.89□□□□□ -0.51
VPS53-220ENST00000576149 LDHAL6AQ6ZMR3 332 aa11.89□□□□□ -0.51
VPS53-220ENST00000576149 FBXL16Q8N461 479 aa11.89□□□□□ -0.51
VPS53-220ENST00000576149 DDX11Q96FC9 970 aa11.89□□□□□ -0.51
VPS53-220ENST00000576149 ZBTB1Q9Y2K1 713 aa11.89□□□□□ -0.51
VPS53-220ENST00000576149 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.89□□□□□ -0.51
VPS53-220ENST00000576149 EXOC5O00471 708 aa11.89□□□□□ -0.51
VPS53-220ENST00000576149 CTDNEP1O95476 244 aa11.89□□□□□ -0.51
VPS53-220ENST00000576149 LIG1P18858 919 aa11.89□□□□□ -0.51
VPS53-220ENST00000576149 HMGN5P82970 282 aaKnown RBP11.89□□□□□ -0.51
VPS53-220ENST00000576149 METTL24Q5JXM2 366 aa11.89□□□□□ -0.51
VPS53-220ENST00000576149 APPBP2Q92624 585 aa11.89□□□□□ -0.51
VPS53-220ENST00000576149 ZNF274Q96GC6 653 aaPredicted RBP11.89□□□□□ -0.51
VPS53-220ENST00000576149 CTNNA3Q9UI47 895 aa11.89□□□□□ -0.51
VPS53-220ENST00000576149 ANKRD18BA2A2Z9 1011 aa11.88□□□□□ -0.51
VPS53-220ENST00000576149 ERVV-1B6SEH8 477 aa11.88□□□□□ -0.51
VPS53-220ENST00000576149 IRS4O14654 1257 aaPredicted RBP11.88□□□□□ -0.51
VPS53-220ENST00000576149 WASHC4Q2M389 1173 aa11.88□□□□□ -0.51
VPS53-220ENST00000576149 NAA16Q6N069 864 aaPredicted RBP11.88□□□□□ -0.51
VPS53-220ENST00000576149 ZNF512BQ96KM6 892 aaPredicted RBP11.88□□□□□ -0.51
VPS53-220ENST00000576149 PTPDC1A2A3K4 754 aa11.88□□□□□ -0.51
VPS53-220ENST00000576149 PDIA3P30101 505 aaKnown RBP11.88□□□□□ -0.51
VPS53-220ENST00000576149 IL6STP40189 918 aaPredicted RBP11.88□□□□□ -0.51
VPS53-220ENST00000576149 EVCP57679 992 aa11.88□□□□□ -0.51
VPS53-220ENST00000576149 VGLL2Q8N8G2 317 aa11.88□□□□□ -0.51
VPS53-220ENST00000576149 USP25Q9UHP3 1055 aa11.88□□□□□ -0.51
VPS53-220ENST00000576149 TRMT112Q9UI30 125 aaKnown RBP11.88□□□□□ -0.51
VPS53-220ENST00000576149 SALL1Q9NSC2 1324 aa11.87□□□□□ -0.51
VPS53-220ENST00000576149 GOLGA6L4A6NEF3 574 aa11.87□□□□□ -0.51
VPS53-220ENST00000576149 OFD1O75665 1012 aa11.87□□□□□ -0.51
VPS53-220ENST00000576149 FGAP02671 866 aa11.87□□□□□ -0.51
VPS53-220ENST00000576149 CCDC192P0DO97 292 aa11.87□□□□□ -0.51
VPS53-220ENST00000576149 IMMTQ16891 758 aaKnown RBP11.87□□□□□ -0.51
VPS53-220ENST00000576149 CHMP4CQ96CF2 233 aa11.87□□□□□ -0.51
VPS53-220ENST00000576149 PUS7LQ9H0K6 701 aaKnown RBP11.87□□□□□ -0.51
VPS53-220ENST00000576149 NUP62CLQ9H1M0 184 aa11.87□□□□□ -0.51
VPS53-220ENST00000576149 CNNM1Q9NRU3 951 aa11.87□□□□□ -0.51
VPS53-220ENST00000576149 KIF3AQ9Y496 699 aa11.87□□□□□ -0.51
VPS53-220ENST00000576149 PLCH1Q4KWH8 1693 aa11.87□□□□□ -0.51
VPS53-220ENST00000576149 PDE8AO60658 829 aa11.87□□□□□ -0.51
VPS53-220ENST00000576149 KDM4AO75164 1064 aa11.87□□□□□ -0.51
VPS53-220ENST00000576149 MCAMP43121 646 aa11.87□□□□□ -0.51
VPS53-220ENST00000576149 CCT2P78371 535 aaKnown RBP11.87□□□□□ -0.51
VPS53-220ENST00000576149 RBM10P98175 930 aaKnown RBP11.87□□□□□ -0.51
VPS53-220ENST00000576149 MAP3K11Q16584 847 aa11.87□□□□□ -0.51
VPS53-220ENST00000576149 PI16Q6UXB8 463 aa11.87□□□□□ -0.51
VPS53-220ENST00000576149 CHST3Q7LGC8 479 aa11.87□□□□□ -0.51
VPS53-220ENST00000576149 SYTL4Q96C24 671 aaPredicted RBP11.87□□□□□ -0.51
VPS53-220ENST00000576149 PGBD1Q96JS3 809 aa11.87□□□□□ -0.51
VPS53-220ENST00000576149 ANKRD36CQ5JPF3 1778 aa11.87□□□□□ -0.51
VPS53-220ENST00000576149 ADCY5O95622 1261 aa11.86□□□□□ -0.51
VPS53-220ENST00000576149 DZIP3Q86Y13 1208 aaKnown RBP11.86□□□□□ -0.51
VPS53-220ENST00000576149 ZNF34Q8IZ26 560 aa11.86□□□□□ -0.51
VPS53-220ENST00000576149 DDX19AQ9NUU7 478 aaKnown RBP11.86□□□□□ -0.51
VPS53-220ENST00000576149 DACT1Q9NYF0 836 aa11.86□□□□□ -0.51
VPS53-220ENST00000576149 CFAP45Q9UL16 551 aa11.86□□□□□ -0.51
VPS53-220ENST00000576149 NWD2Q9ULI1 1742 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms