RNA–Protein interactions for RNA: ENST00000575513.1

CIITA-210, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 516 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-210ENST00000575513 PTPN12Q05209 780 aaKnown RBP16.96■□□□□ 0.31
CIITA-210ENST00000575513 USP17L1Q7RTZ2 530 aa16.96■□□□□ 0.31
CIITA-210ENST00000575513 TXNRD3Q86VQ6 643 aa16.96■□□□□ 0.31
CIITA-210ENST00000575513 CNOT7Q9UIV1 285 aaKnown RBP16.96■□□□□ 0.31
CIITA-210ENST00000575513 RCAN3Q9UKA8 241 aa16.96■□□□□ 0.31
CIITA-210ENST00000575513 TNNQ9UQP3 1299 aa16.96■□□□□ 0.31
CIITA-210ENST00000575513 EYA2O00167 538 aa16.95■□□□□ 0.3
CIITA-210ENST00000575513 MMP14P50281 582 aa16.95■□□□□ 0.3
CIITA-210ENST00000575513 APLP1P51693 650 aa16.95■□□□□ 0.3
CIITA-210ENST00000575513 LRRC24Q50LG9 513 aa16.95■□□□□ 0.3
CIITA-210ENST00000575513 EAPPQ56P03 285 aaPredicted RBP16.95■□□□□ 0.3
CIITA-210ENST00000575513 STRIP1Q5VSL9 837 aa16.95■□□□□ 0.3
CIITA-210ENST00000575513 YTHDC1Q96MU7 727 aaKnown RBP16.95■□□□□ 0.3
CIITA-210ENST00000575513 PLIN1O60240 522 aa16.94■□□□□ 0.3
CIITA-210ENST00000575513 CIAO1O76071 339 aa16.94■□□□□ 0.3
CIITA-210ENST00000575513 PDE8BO95263 885 aa16.94■□□□□ 0.3
CIITA-210ENST00000575513 POTEIP0CG38 1075 aa16.94■□□□□ 0.3
CIITA-210ENST00000575513 POTEJP0CG39 1038 aa16.94■□□□□ 0.3
CIITA-210ENST00000575513 RSBN1LQ6PCB5 846 aaPredicted RBP16.94■□□□□ 0.3
CIITA-210ENST00000575513 ZNF804AQ7Z570 1209 aa16.94■□□□□ 0.3
CIITA-210ENST00000575513 VGLL2Q8N8G2 317 aa16.94■□□□□ 0.3
CIITA-210ENST00000575513 ZC3H15Q8WU90 426 aaKnown RBP16.94■□□□□ 0.3
CIITA-210ENST00000575513 CD209Q9NNX6 404 aa16.94■□□□□ 0.3
CIITA-210ENST00000575513 COPRSQ9NQ92 184 aa16.94■□□□□ 0.3
CIITA-210ENST00000575513 ZBTB12Q9Y330 459 aaPredicted RBP16.94■□□□□ 0.3
CIITA-210ENST00000575513 SNAP23O00161 211 aa16.93■□□□□ 0.3
CIITA-210ENST00000575513 ZBTB7BO15156 539 aaPredicted RBP16.93■□□□□ 0.3
CIITA-210ENST00000575513 IL1R1P14778 569 aa16.93■□□□□ 0.3
CIITA-210ENST00000575513 KLRK1P26718 216 aa16.93■□□□□ 0.3
CIITA-210ENST00000575513 METTL24Q5JXM2 366 aa16.93■□□□□ 0.3
CIITA-210ENST00000575513 MICALL2Q8IY33 904 aa16.93■□□□□ 0.3
CIITA-210ENST00000575513 KLHDC4Q8TBB5 520 aa16.93■□□□□ 0.3
CIITA-210ENST00000575513 GMLQ99445 158 aa16.93■□□□□ 0.3
CIITA-210ENST00000575513 PGAP2Q9UHJ9 254 aa16.93■□□□□ 0.3
CIITA-210ENST00000575513 CLEC11AQ9Y240 323 aa16.93■□□□□ 0.3
CIITA-210ENST00000575513 MYO3BQ8WXR4 1341 aa16.93■□□□□ 0.3
CIITA-210ENST00000575513 SPEF2Q9C093 1822 aa16.92■□□□□ 0.3
CIITA-210ENST00000575513 RLBP1P12271 317 aa16.92■□□□□ 0.3
CIITA-210ENST00000575513 DACT2Q5SW24 774 aa16.92■□□□□ 0.3
CIITA-210ENST00000575513 TTLL5Q6EMB2 1281 aa16.92■□□□□ 0.3
CIITA-210ENST00000575513 ATG9AQ7Z3C6 839 aa16.92■□□□□ 0.3
CIITA-210ENST00000575513 SRGAP3O43295 1099 aa16.91■□□□□ 0.3
CIITA-210ENST00000575513 ITGBL1O95965 494 aaPredicted RBP16.91■□□□□ 0.3
CIITA-210ENST00000575513 IL15P40933 162 aaPredicted RBP16.91■□□□□ 0.3
CIITA-210ENST00000575513 ZNF280AP59817 542 aaPredicted RBP16.91■□□□□ 0.3
CIITA-210ENST00000575513 ITPRIPQ8IWB1 547 aa16.91■□□□□ 0.3
CIITA-210ENST00000575513 CNTROBQ8N137 903 aa16.91■□□□□ 0.3
CIITA-210ENST00000575513 SASH1O94885 1247 aa16.9■□□□□ 0.3
CIITA-210ENST00000575513 USP17L8P0C7I0 530 aa16.9■□□□□ 0.3
CIITA-210ENST00000575513 HIBADHP31937 336 aaKnown RBP16.9■□□□□ 0.3
CIITA-210ENST00000575513 FKBP1AP62942 108 aaKnown RBP16.9■□□□□ 0.3
CIITA-210ENST00000575513 PUM3Q15397 648 aaKnown RBP16.9■□□□□ 0.3
CIITA-210ENST00000575513 FBXO33Q7Z6M2 555 aa16.9■□□□□ 0.3
CIITA-210ENST00000575513 FAM84BQ96KN1 310 aaPredicted RBP16.9■□□□□ 0.3
CIITA-210ENST00000575513 PASKQ96RG2 1323 aa16.9■□□□□ 0.3
CIITA-210ENST00000575513 ADAMTSL1Q8N6G6 1762 aa16.89■□□□□ 0.3
CIITA-210ENST00000575513 FGFR2P21802 821 aa16.89■□□□□ 0.29
CIITA-210ENST00000575513 HIRAP54198 1017 aaPredicted RBP16.89■□□□□ 0.29
CIITA-210ENST00000575513 CAVIN4Q5BKX8 364 aa16.89■□□□□ 0.29
CIITA-210ENST00000575513 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.89■□□□□ 0.29
CIITA-210ENST00000575513 TDRD7Q8NHU6 1098 aaKnown RBP16.89■□□□□ 0.29
CIITA-210ENST00000575513 LPIN2Q92539 896 aa16.89■□□□□ 0.29
CIITA-210ENST00000575513 CEP126Q9P2H0 1117 aa16.89■□□□□ 0.29
CIITA-210ENST00000575513 SCN9AQ15858 1988 aa16.88■□□□□ 0.29
CIITA-210ENST00000575513 IFIT1P09914 478 aaKnown RBP16.88■□□□□ 0.29
CIITA-210ENST00000575513 GTF2IP78347 998 aa16.88■□□□□ 0.29
CIITA-210ENST00000575513 PDE3AQ14432 1141 aa16.88■□□□□ 0.29
CIITA-210ENST00000575513 MAP1SQ66K74 1059 aaPredicted RBP16.88■□□□□ 0.29
CIITA-210ENST00000575513 OGFOD1Q8N543 542 aa16.88■□□□□ 0.29
CIITA-210ENST00000575513 PANK1Q8TE04 598 aa16.88■□□□□ 0.29
CIITA-210ENST00000575513 CHMP4BQ9H444 224 aaKnown RBP16.88■□□□□ 0.29
CIITA-210ENST00000575513 SHTN1A0MZ66 631 aa16.87■□□□□ 0.29
CIITA-210ENST00000575513 ATP8B2P98198 1209 aa16.87■□□□□ 0.29
CIITA-210ENST00000575513 SAMD7Q7Z3H4 446 aa16.87■□□□□ 0.29
CIITA-210ENST00000575513 VPS37DQ86XT2 251 aa16.87■□□□□ 0.29
CIITA-210ENST00000575513 TRPM4Q8TD43 1214 aa16.87■□□□□ 0.29
CIITA-210ENST00000575513 SIL1Q9H173 461 aa16.87■□□□□ 0.29
CIITA-210ENST00000575513 PA2G4Q9UQ80 394 aaKnown RBP16.87■□□□□ 0.29
CIITA-210ENST00000575513 FAM205AQ6ZU69 1335 aa16.87■□□□□ 0.29
CIITA-210ENST00000575513 ZBTB22O15209 634 aa16.86■□□□□ 0.29
CIITA-210ENST00000575513 SLC5A1P13866 664 aa16.86■□□□□ 0.29
CIITA-210ENST00000575513 GYG1P46976 350 aa16.86■□□□□ 0.29
CIITA-210ENST00000575513 POLA2Q14181 598 aa16.86■□□□□ 0.29
CIITA-210ENST00000575513 MVPQ14764 893 aaKnown RBP16.86■□□□□ 0.29
CIITA-210ENST00000575513 SSH3Q8TE77 659 aa16.86■□□□□ 0.29
CIITA-210ENST00000575513 DDX19BQ9UMR2 479 aa16.86■□□□□ 0.29
CIITA-210ENST00000575513 PNMA6EA0A0J9YXQ4 647 aa16.85■□□□□ 0.29
CIITA-210ENST00000575513 KIF4BQ2VIQ3 1234 aa16.85■□□□□ 0.29
CIITA-210ENST00000575513 TBC1D10BQ4KMP7 808 aaPredicted RBP16.85■□□□□ 0.29
CIITA-210ENST00000575513 CDC37L1Q7L3B6 337 aa16.85■□□□□ 0.29
CIITA-210ENST00000575513 FBXW7Q969H0 707 aa16.85■□□□□ 0.29
CIITA-210ENST00000575513 MYOZ2Q9NPC6 264 aa16.85■□□□□ 0.29
CIITA-210ENST00000575513 CREBZFQ9NS37 354 aa16.85■□□□□ 0.29
CIITA-210ENST00000575513 HDAC9Q9UKV0 1011 aa16.85■□□□□ 0.29
CIITA-210ENST00000575513 CEP350Q5VT06 3117 aa16.85■□□□□ 0.29
CIITA-210ENST00000575513 A0A1B0GUL6 1792 aa16.84■□□□□ 0.29
CIITA-210ENST00000575513 PSME4Q14997 1843 aa16.84■□□□□ 0.29
CIITA-210ENST00000575513 DNAJC5GQ8N7S2 189 aa16.84■□□□□ 0.29
CIITA-210ENST00000575513 AKAP2Q9Y2D5 859 aa16.84■□□□□ 0.29
CIITA-210ENST00000575513 EGFRP00533 1210 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms