RNA–Protein interactions for RNA: ENST00000575338.1

SMG6-217, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-217ENST00000575338 TCHHQ07283 1943 aa8.09□□□□□ -1.11
SMG6-217ENST00000575338 CCDC88AQ3V6T2 1871 aa8.09□□□□□ -1.12
SMG6-217ENST00000575338 UBN2Q6ZU65 1347 aa8.08□□□□□ -1.12
SMG6-217ENST00000575338 CAMTA2O94983 1202 aa8.08□□□□□ -1.12
SMG6-217ENST00000575338 ARID4AP29374 1257 aaPredicted RBP8.08□□□□□ -1.12
SMG6-217ENST00000575338 MRE11P49959 708 aa8.08□□□□□ -1.12
SMG6-217ENST00000575338 FKBP4Q02790 459 aaKnown RBP eCLIP8.08□□□□□ -1.12
SMG6-217ENST00000575338 MCTP1Q6DN14 999 aa8.08□□□□□ -1.12
SMG6-217ENST00000575338 ZGPATQ8N5A5 531 aaKnown RBP8.08□□□□□ -1.12
SMG6-217ENST00000575338 GNL3LQ9NVN8 582 aaKnown RBP8.08□□□□□ -1.12
SMG6-217ENST00000575338 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.08□□□□□ -1.12
SMG6-217ENST00000575338 CARMIL3Q8ND23 1372 aa8.08□□□□□ -1.12
SMG6-217ENST00000575338 MYH15Q9Y2K3 1946 aa8.07□□□□□ -1.12
SMG6-217ENST00000575338 WDR19Q8NEZ3 1342 aa8.07□□□□□ -1.12
SMG6-217ENST00000575338 STX6O43752 255 aa8.07□□□□□ -1.12
SMG6-217ENST00000575338 ZPR1O75312 459 aa8.07□□□□□ -1.12
SMG6-217ENST00000575338 RPS6KA4O75676 772 aa8.07□□□□□ -1.12
SMG6-217ENST00000575338 GTF2E1P29083 439 aaPredicted RBP8.07□□□□□ -1.12
SMG6-217ENST00000575338 MAP3K12Q12852 859 aa8.07□□□□□ -1.12
SMG6-217ENST00000575338 UBE3CQ15386 1083 aa8.07□□□□□ -1.12
SMG6-217ENST00000575338 SUSD4Q5VX71 490 aa8.07□□□□□ -1.12
SMG6-217ENST00000575338 NOL8Q76FK4 1167 aaKnown RBP8.07□□□□□ -1.12
SMG6-217ENST00000575338 ZNF589Q86UQ0 364 aaPredicted RBP8.07□□□□□ -1.12
SMG6-217ENST00000575338 LLPHQ9BRT6 129 aaKnown RBP8.07□□□□□ -1.12
SMG6-217ENST00000575338 PUS3Q9BZE2 481 aaKnown RBP8.07□□□□□ -1.12
SMG6-217ENST00000575338 TRPC5Q9UL62 973 aaPredicted RBP8.07□□□□□ -1.12
SMG6-217ENST00000575338 MYO5AQ9Y4I1 1855 aaKnown RBP8.06□□□□□ -1.12
SMG6-217ENST00000575338 C4AP0C0L4 1744 aa8.06□□□□□ -1.12
SMG6-217ENST00000575338 C4BP0C0L5 1744 aa8.06□□□□□ -1.12
SMG6-217ENST00000575338 ZMYM6O95789 1325 aa8.06□□□□□ -1.12
SMG6-217ENST00000575338 DHX16O60231 1041 aaKnown RBP8.06□□□□□ -1.12
SMG6-217ENST00000575338 LETM1O95202 739 aaPredicted RBP8.06□□□□□ -1.12
SMG6-217ENST00000575338 NTSR2O95665 410 aa8.06□□□□□ -1.12
SMG6-217ENST00000575338 ZSCAN22P10073 491 aaPredicted RBP8.06□□□□□ -1.12
SMG6-217ENST00000575338 HSPD1P10809 573 aaKnown RBP8.06□□□□□ -1.12
SMG6-217ENST00000575338 GNAT2P19087 354 aa8.06□□□□□ -1.12
SMG6-217ENST00000575338 HMGN5P82970 282 aaKnown RBP8.06□□□□□ -1.12
SMG6-217ENST00000575338 TRDNQ13061 729 aa8.06□□□□□ -1.12
SMG6-217ENST00000575338 ITPK1Q13572 414 aa8.06□□□□□ -1.12
SMG6-217ENST00000575338 SF3B3Q15393 1217 aaKnown RBP8.06□□□□□ -1.12
SMG6-217ENST00000575338 WASHC4Q2M389 1173 aa8.06□□□□□ -1.12
SMG6-217ENST00000575338 ADCK5Q3MIX3 580 aa8.06□□□□□ -1.12
SMG6-217ENST00000575338 DHX32Q7L7V1 743 aaKnown RBP8.06□□□□□ -1.12
SMG6-217ENST00000575338 ANKRD18AQ8IVF6 992 aa8.06□□□□□ -1.12
SMG6-217ENST00000575338 FBXL16Q8N461 479 aa8.06□□□□□ -1.12
SMG6-217ENST00000575338 VGLL2Q8N8G2 317 aa8.06□□□□□ -1.12
SMG6-217ENST00000575338 NARFQ9UHQ1 456 aa8.06□□□□□ -1.12
SMG6-217ENST00000575338 RTCBQ9Y3I0 505 aaKnown RBP8.06□□□□□ -1.12
SMG6-217ENST00000575338 MAST3O60307 1309 aa8.05□□□□□ -1.12
SMG6-217ENST00000575338 MAST2Q6P0Q8 1798 aa8.05□□□□□ -1.12
SMG6-217ENST00000575338 CYP21A2P08686 494 aa8.05□□□□□ -1.12
SMG6-217ENST00000575338 ADRA2BP18089 450 aa8.05□□□□□ -1.12
SMG6-217ENST00000575338 FGFR2P21802 821 aa8.05□□□□□ -1.12
SMG6-217ENST00000575338 GJB2P29033 226 aa8.05□□□□□ -1.12
SMG6-217ENST00000575338 ADD2P35612 726 aa8.05□□□□□ -1.12
SMG6-217ENST00000575338 UBE4AQ14139 1066 aa8.05□□□□□ -1.12
SMG6-217ENST00000575338 SLC10A5Q5PT55 438 aa8.05□□□□□ -1.12
SMG6-217ENST00000575338 CCDC102BQ68D86 513 aa8.05□□□□□ -1.12
SMG6-217ENST00000575338 TPTE2Q6XPS3 522 aa8.05□□□□□ -1.12
SMG6-217ENST00000575338 RALYLQ86SE5 291 aaKnown RBP8.05□□□□□ -1.12
SMG6-217ENST00000575338 CCDC83Q8IWF9 413 aa8.05□□□□□ -1.12
SMG6-217ENST00000575338 TMEM87AQ8NBN3 555 aa8.05□□□□□ -1.12
SMG6-217ENST00000575338 RGS22Q8NE09 1264 aa8.05□□□□□ -1.12
SMG6-217ENST00000575338 NCOA7Q8NI08 942 aa8.05□□□□□ -1.12
SMG6-217ENST00000575338 EDC3Q96F86 508 aaKnown RBP8.05□□□□□ -1.12
SMG6-217ENST00000575338 GJD4Q96KN9 370 aaPredicted RBP8.05□□□□□ -1.12
SMG6-217ENST00000575338 CCDC85AQ96PX6 553 aaPredicted RBP8.05□□□□□ -1.12
SMG6-217ENST00000575338 SETDB2Q96T68 719 aa8.05□□□□□ -1.12
SMG6-217ENST00000575338 LMBRD1Q9NUN5 540 aa8.05□□□□□ -1.12
SMG6-217ENST00000575338 KIAA1551Q9HCM1 1747 aa8.05□□□□□ -1.12
SMG6-217ENST00000575338 FSD2A1L4K1 749 aa8.04□□□□□ -1.12
SMG6-217ENST00000575338 ZNF213O14771 459 aa8.04□□□□□ -1.12
SMG6-217ENST00000575338 SEMA3EO15041 775 aa8.04□□□□□ -1.12
SMG6-217ENST00000575338 ZBTB22O15209 634 aa8.04□□□□□ -1.12
SMG6-217ENST00000575338 F13A1P00488 732 aa8.04□□□□□ -1.12
SMG6-217ENST00000575338 SYT1P21579 422 aa8.04□□□□□ -1.12
SMG6-217ENST00000575338 ADORA1P30542 326 aa8.04□□□□□ -1.12
SMG6-217ENST00000575338 MCM5P33992 734 aa8.04□□□□□ -1.12
SMG6-217ENST00000575338 ZAP70P43403 619 aa8.04□□□□□ -1.12
SMG6-217ENST00000575338 ME3Q16798 604 aa8.04□□□□□ -1.12
SMG6-217ENST00000575338 CAVIN4Q5BKX8 364 aa8.04□□□□□ -1.12
SMG6-217ENST00000575338 LARP1BQ659C4 914 aaKnown RBP8.04□□□□□ -1.12
SMG6-217ENST00000575338 Q6ZUG5 572 aa8.04□□□□□ -1.12
SMG6-217ENST00000575338 FAM184AQ8NB25 1140 aa8.04□□□□□ -1.12
SMG6-217ENST00000575338 SPATA5Q8NB90 893 aa8.04□□□□□ -1.12
SMG6-217ENST00000575338 LINC00116Q8NCU8 138 aa8.04□□□□□ -1.12
SMG6-217ENST00000575338 AIDAQ96BJ3 306 aa8.04□□□□□ -1.12
SMG6-217ENST00000575338 ZNF274Q96GC6 653 aaPredicted RBP8.04□□□□□ -1.12
SMG6-217ENST00000575338 NLRP3Q96P20 1036 aa8.04□□□□□ -1.12
SMG6-217ENST00000575338 AGXT2Q9BYV1 514 aa8.04□□□□□ -1.12
SMG6-217ENST00000575338 NACAP1Q9BZK3 213 aa8.04□□□□□ -1.12
SMG6-217ENST00000575338 ANKRD2Q9GZV1 360 aa8.04□□□□□ -1.12
SMG6-217ENST00000575338 ZSCAN16Q9H4T2 348 aaPredicted RBP8.04□□□□□ -1.12
SMG6-217ENST00000575338 CCNL1Q9UK58 526 aaPredicted RBP8.04□□□□□ -1.12
SMG6-217ENST00000575338 DUOX1Q9NRD9 1551 aa8.04□□□□□ -1.12
SMG6-217ENST00000575338 UBR3Q6ZT12 1888 aa8.03□□□□□ -1.12
SMG6-217ENST00000575338 E7EWF7 191 aa8.03□□□□□ -1.12
SMG6-217ENST00000575338 NPHP1O15259 732 aa8.03□□□□□ -1.12
SMG6-217ENST00000575338 GPAA1O43292 621 aa8.03□□□□□ -1.12
SMG6-217ENST00000575338 KCNQ2O43526 872 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms