RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 SNAP23O00161 211 aa21.05■□□□□ 0.96
NUP88-210ENST00000574867 PPIP5K2O43314 1243 aa21.05■□□□□ 0.96
NUP88-210ENST00000574867 TNNI3KQ59H18 835 aa21.05■□□□□ 0.96
NUP88-210ENST00000574867 FPGT-TNNI3KV9GXZ4 949 aa21.05■□□□□ 0.96
NUP88-210ENST00000574867 IRS2Q9Y4H2 1338 aa21.04■□□□□ 0.96
NUP88-210ENST00000574867 A0A1B0GUL7 405 aa21.04■□□□□ 0.96
NUP88-210ENST00000574867 CLASRPQ8N2M8 674 aaKnown RBP21.04■□□□□ 0.96
NUP88-210ENST00000574867 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.04■□□□□ 0.96
NUP88-210ENST00000574867 WTIPA6NIX2 430 aaPredicted RBP21.03■□□□□ 0.96
NUP88-210ENST00000574867 AOC3Q16853 763 aa21.03■□□□□ 0.96
NUP88-210ENST00000574867 GPR101Q96P66 508 aaPredicted RBP21.03■□□□□ 0.96
NUP88-210ENST00000574867 PPP4R2Q9NY27 417 aa21.03■□□□□ 0.96
NUP88-210ENST00000574867 LARGE2Q8N3Y3 721 aa21.03■□□□□ 0.96
NUP88-210ENST00000574867 CCDC136Q96JN2 1154 aa21.03■□□□□ 0.96
NUP88-210ENST00000574867 IL1RAPL2Q9NP60 686 aa21.03■□□□□ 0.96
NUP88-210ENST00000574867 ZBTB47Q9UFB7 747 aaPredicted RBP21.03■□□□□ 0.96
NUP88-210ENST00000574867 TIAM2Q8IVF5 1701 aa21.02■□□□□ 0.96
NUP88-210ENST00000574867 KLRK1P26718 216 aa21.02■□□□□ 0.96
NUP88-210ENST00000574867 RIMBP2O15034 1052 aa21.01■□□□□ 0.95
NUP88-210ENST00000574867 CAVIN4Q5BKX8 364 aa21.01■□□□□ 0.95
NUP88-210ENST00000574867 ZNF804AQ7Z570 1209 aa21.01■□□□□ 0.95
NUP88-210ENST00000574867 NEUROD6Q96NK8 337 aa21.01■□□□□ 0.95
NUP88-210ENST00000574867 PRELPP51888 382 aa21■□□□□ 0.95
NUP88-210ENST00000574867 TIMM10P62072 90 aa21■□□□□ 0.95
NUP88-210ENST00000574867 AACSQ86V21 672 aa21■□□□□ 0.95
NUP88-210ENST00000574867 TXNRD3Q86VQ6 643 aa21■□□□□ 0.95
NUP88-210ENST00000574867 NIM1KQ8IY84 436 aa21■□□□□ 0.95
NUP88-210ENST00000574867 JDP2Q8WYK2 163 aa21■□□□□ 0.95
NUP88-210ENST00000574867 EAF2Q96CJ1 260 aaPredicted RBP21■□□□□ 0.95
NUP88-210ENST00000574867 COA1Q9GZY4 146 aa21■□□□□ 0.95
NUP88-210ENST00000574867 COL4A5P29400 1685 aa21■□□□□ 0.95
NUP88-210ENST00000574867 CENPQQ7L2Z9 268 aaPredicted RBP21■□□□□ 0.95
NUP88-210ENST00000574867 KDM2BQ8NHM5 1336 aa21■□□□□ 0.95
NUP88-210ENST00000574867 XAGE2Q96GT9 111 aa21■□□□□ 0.95
NUP88-210ENST00000574867 G3V3G9 751 aa20.99■□□□□ 0.95
NUP88-210ENST00000574867 DCAF8Q5TAQ9 597 aa20.99■□□□□ 0.95
NUP88-210ENST00000574867 ANKRD45Q5TZF3 282 aa20.99■□□□□ 0.95
NUP88-210ENST00000574867 VPS37DQ86XT2 251 aa20.99■□□□□ 0.95
NUP88-210ENST00000574867 RNF181Q9P0P0 153 aa20.99■□□□□ 0.95
NUP88-210ENST00000574867 IFIT2P09913 472 aaKnown RBP20.98■□□□□ 0.95
NUP88-210ENST00000574867 HIBADHP31937 336 aaKnown RBP20.98■□□□□ 0.95
NUP88-210ENST00000574867 FAM84BQ96KN1 310 aaPredicted RBP20.98■□□□□ 0.95
NUP88-210ENST00000574867 ZC3H4Q9UPT8 1303 aaKnown RBP20.98■□□□□ 0.95
NUP88-210ENST00000574867 SMARCA5O60264 1052 aaPredicted RBP20.98■□□□□ 0.95
NUP88-210ENST00000574867 ADORA1P30542 326 aa20.98■□□□□ 0.95
NUP88-210ENST00000574867 GYG1P46976 350 aa20.98■□□□□ 0.95
NUP88-210ENST00000574867 NUCB1Q02818 461 aa20.98■□□□□ 0.95
NUP88-210ENST00000574867 C9orf131Q5VYM1 1079 aa20.98■□□□□ 0.95
NUP88-210ENST00000574867 FBXO33Q7Z6M2 555 aa20.98■□□□□ 0.95
NUP88-210ENST00000574867 DBNLQ9UJU6 430 aaKnown RBP20.98■□□□□ 0.95
NUP88-210ENST00000574867 CHD4Q14839 1912 aa20.97■□□□□ 0.95
NUP88-210ENST00000574867 ECE2O60344 883 aa20.97■□□□□ 0.95
NUP88-210ENST00000574867 GORABQ5T7V8 394 aa20.97■□□□□ 0.95
NUP88-210ENST00000574867 PODNQ7Z5L7 613 aa20.97■□□□□ 0.95
NUP88-210ENST00000574867 MYH13Q9UKX3 1938 aa20.97■□□□□ 0.95
NUP88-210ENST00000574867 DBNDD2Q9BQY9 259 aa20.97■□□□□ 0.95
NUP88-210ENST00000574867 CCDC8Q9H0W5 538 aaPredicted RBP20.97■□□□□ 0.95
NUP88-210ENST00000574867 DBNDD1Q9H9R9 158 aa20.97■□□□□ 0.95
NUP88-210ENST00000574867 CD209Q9NNX6 404 aa20.97■□□□□ 0.95
NUP88-210ENST00000574867 PSME4Q14997 1843 aa20.96■□□□□ 0.95
NUP88-210ENST00000574867 UTRNP46939 3433 aa20.96■□□□□ 0.95
NUP88-210ENST00000574867 DOK7Q18PE1 504 aa20.96■□□□□ 0.95
NUP88-210ENST00000574867 B4GALNT3Q6L9W6 998 aa20.96■□□□□ 0.95
NUP88-210ENST00000574867 GNL3LQ9NVN8 582 aaKnown RBP20.96■□□□□ 0.95
NUP88-210ENST00000574867 ZNRF3Q9ULT6 936 aa20.96■□□□□ 0.95
NUP88-210ENST00000574867 ZBTB22O15209 634 aa20.95■□□□□ 0.94
NUP88-210ENST00000574867 IL1R1P14778 569 aa20.95■□□□□ 0.94
NUP88-210ENST00000574867 BCAMP50895 628 aa20.95■□□□□ 0.94
NUP88-210ENST00000574867 CCDC102BQ68D86 513 aa20.95■□□□□ 0.94
NUP88-210ENST00000574867 CHD1LQ86WJ1 897 aa20.95■□□□□ 0.94
NUP88-210ENST00000574867 TLR7Q9NYK1 1049 aaKnown RBP20.95■□□□□ 0.94
NUP88-210ENST00000574867 CCDC158Q5M9N0 1113 aa20.95■□□□□ 0.94
NUP88-210ENST00000574867 FZD9O00144 591 aa20.93■□□□□ 0.94
NUP88-210ENST00000574867 SEMA3EO15041 775 aa20.93■□□□□ 0.94
NUP88-210ENST00000574867 PHKA1P46020 1223 aa20.93■□□□□ 0.94
NUP88-210ENST00000574867 TDRD7Q8NHU6 1098 aaKnown RBP20.93■□□□□ 0.94
NUP88-210ENST00000574867 BCL11AQ9H165 835 aa20.93■□□□□ 0.94
NUP88-210ENST00000574867 SCN9AQ15858 1988 aa20.93■□□□□ 0.94
NUP88-210ENST00000574867 UQCRFS1P1P0C7P4 283 aa20.93■□□□□ 0.94
NUP88-210ENST00000574867 GPATCH3Q96I76 525 aa20.93■□□□□ 0.94
NUP88-210ENST00000574867 ZNF512BQ96KM6 892 aaPredicted RBP20.93■□□□□ 0.94
NUP88-210ENST00000574867 LNPKQ9C0E8 428 aa20.93■□□□□ 0.94
NUP88-210ENST00000574867 YDJCA8MPS7 323 aa20.92■□□□□ 0.94
NUP88-210ENST00000574867 ARID4AP29374 1257 aaPredicted RBP20.92■□□□□ 0.94
NUP88-210ENST00000574867 EIF6P56537 245 aaKnown RBP20.92■□□□□ 0.94
NUP88-210ENST00000574867 TTC39AQ5SRH9 613 aa20.92■□□□□ 0.94
NUP88-210ENST00000574867 ZNF646O15015 1829 aaPredicted RBP20.91■□□□□ 0.94
NUP88-210ENST00000574867 FRAT2O75474 233 aaPredicted RBP20.91■□□□□ 0.94
NUP88-210ENST00000574867 PDS5AQ29RF7 1337 aaKnown RBP20.91■□□□□ 0.94
NUP88-210ENST00000574867 DENND2AQ9ULE3 1009 aa20.9■□□□□ 0.94
NUP88-210ENST00000574867 TTC41PQ6P2S7 1318 aa20.9■□□□□ 0.94
NUP88-210ENST00000574867 USP17L3A6NCW0 530 aa20.89■□□□□ 0.93
NUP88-210ENST00000574867 USP17L4A6NCW7 530 aa20.89■□□□□ 0.93
NUP88-210ENST00000574867 TNIP1Q15025 636 aa20.89■□□□□ 0.93
NUP88-210ENST00000574867 STRIP1Q5VSL9 837 aa20.89■□□□□ 0.93
NUP88-210ENST00000574867 USP17L1Q7RTZ2 530 aa20.89■□□□□ 0.93
NUP88-210ENST00000574867 ECHDC1Q9NTX5 307 aa20.89■□□□□ 0.93
NUP88-210ENST00000574867 COL1A1P02452 1464 aaPredicted RBP20.89■□□□□ 0.93
NUP88-210ENST00000574867 FAM205AQ6ZU69 1335 aa20.89■□□□□ 0.93
NUP88-210ENST00000574867 SALL3Q9BXA9 1300 aa20.89■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms