RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 TXNDC2Q86VQ3 553 aa6.03□□□□□ -1.44
NUP88-209ENST00000574855 TXNRD3Q86VQ6 643 aa6.03□□□□□ -1.44
NUP88-209ENST00000574855 GJD3Q8N144 294 aa6.03□□□□□ -1.44
NUP88-209ENST00000574855 TUT1Q9H6E5 874 aaKnown RBP6.03□□□□□ -1.44
NUP88-209ENST00000574855 BRPF3Q9ULD4 1205 aa6.03□□□□□ -1.44
NUP88-209ENST00000574855 LINC01387J3KSC0 135 aa6.02□□□□□ -1.45
NUP88-209ENST00000574855 DLL1O00548 723 aa6.02□□□□□ -1.45
NUP88-209ENST00000574855 PTPRAP18433 802 aa6.02□□□□□ -1.45
NUP88-209ENST00000574855 SETDB1Q15047 1291 aa6.02□□□□□ -1.45
NUP88-209ENST00000574855 FAM117BQ6P1L5 589 aa6.02□□□□□ -1.45
NUP88-209ENST00000574855 SNX29Q8TEQ0 813 aa6.02□□□□□ -1.45
NUP88-209ENST00000574855 CHRDQ9H2X0 955 aa6.02□□□□□ -1.45
NUP88-209ENST00000574855 TPSG1Q9NRR2 321 aa6.02□□□□□ -1.45
NUP88-209ENST00000574855 PDE2AO00408 941 aaPredicted RBP6.01□□□□□ -1.45
NUP88-209ENST00000574855 NDUFB5O43674 189 aa6.01□□□□□ -1.45
NUP88-209ENST00000574855 EDN3P14138 238 aa6.01□□□□□ -1.45
NUP88-209ENST00000574855 POP1Q99575 1024 aaKnown RBP6.01□□□□□ -1.45
NUP88-209ENST00000574855 MRPL18Q9H0U6 180 aaKnown RBP6.01□□□□□ -1.45
NUP88-209ENST00000574855 DZANK1Q9NVP4 752 aa6.01□□□□□ -1.45
NUP88-209ENST00000574855 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.01□□□□□ -1.45
NUP88-209ENST00000574855 EREGO14944 169 aa6□□□□□ -1.45
NUP88-209ENST00000574855 BRD1O95696 1058 aa6□□□□□ -1.45
NUP88-209ENST00000574855 NEFLP07196 543 aa6□□□□□ -1.45
NUP88-209ENST00000574855 CABP4P57796 275 aa6□□□□□ -1.45
NUP88-209ENST00000574855 ARHGAP4P98171 946 aa6□□□□□ -1.45
NUP88-209ENST00000574855 ECM1Q16610 540 aa6□□□□□ -1.45
NUP88-209ENST00000574855 HOMEZQ8IX15 550 aa6□□□□□ -1.45
NUP88-209ENST00000574855 TMEM130Q8N3G9 435 aa6□□□□□ -1.45
NUP88-209ENST00000574855 WFDC12Q8WWY7 111 aa6□□□□□ -1.45
NUP88-209ENST00000574855 CITED4Q96RK1 184 aa6□□□□□ -1.45
NUP88-209ENST00000574855 ADAM19Q9H013 955 aa6□□□□□ -1.45
NUP88-209ENST00000574855 ZFYVE28Q9HCC9 887 aa6□□□□□ -1.45
NUP88-209ENST00000574855 SH2B1Q9NRF2 756 aaPredicted RBP6□□□□□ -1.45
NUP88-209ENST00000574855 FOXD3Q9UJU5 478 aaPredicted RBP6□□□□□ -1.45
NUP88-209ENST00000574855 AMOTL2Q9Y2J4 779 aa6□□□□□ -1.45
NUP88-209ENST00000574855 NFKBIEO00221 500 aa5.99□□□□□ -1.45
NUP88-209ENST00000574855 CDC25BP30305 580 aa5.99□□□□□ -1.45
NUP88-209ENST00000574855 IREB2P48200 963 aaKnown RBP5.99□□□□□ -1.45
NUP88-209ENST00000574855 PDE3BQ13370 1112 aa5.99□□□□□ -1.45
NUP88-209ENST00000574855 KLHL23Q8NBE8 558 aa5.99□□□□□ -1.45
NUP88-209ENST00000574855 OSMRQ99650 979 aa5.99□□□□□ -1.45
NUP88-209ENST00000574855 SEMA6BQ9H3T3 888 aa5.99□□□□□ -1.45
NUP88-209ENST00000574855 AKTIPQ9H8T0 292 aa5.99□□□□□ -1.45
NUP88-209ENST00000574855 FSCN2O14926 492 aa5.98□□□□□ -1.45
NUP88-209ENST00000574855 TRPA1O75762 1119 aa5.98□□□□□ -1.45
NUP88-209ENST00000574855 EPHA1P21709 976 aa5.98□□□□□ -1.45
NUP88-209ENST00000574855 CD68P34810 354 aaPredicted RBP5.98□□□□□ -1.45
NUP88-209ENST00000574855 RSPO4Q2I0M5 234 aaPredicted RBP5.98□□□□□ -1.45
NUP88-209ENST00000574855 NKAPLQ5M9Q1 402 aa5.98□□□□□ -1.45
NUP88-209ENST00000574855 TXNDC11Q6PKC3 985 aa5.98□□□□□ -1.45
NUP88-209ENST00000574855 ADAMTSL4Q6UY14 1074 aa5.98□□□□□ -1.45
NUP88-209ENST00000574855 TMEM102Q8N9M5 508 aaPredicted RBP5.98□□□□□ -1.45
NUP88-209ENST00000574855 GALNT11Q8NCW6 608 aa5.98□□□□□ -1.45
NUP88-209ENST00000574855 NXPE3Q969Y0 559 aa5.98□□□□□ -1.45
NUP88-209ENST00000574855 H2AFB1P0C5Y9 115 aa5.97□□□□□ -1.45
NUP88-209ENST00000574855 H2AFB2P0C5Z0 115 aa5.97□□□□□ -1.45
NUP88-209ENST00000574855 ACPPP15309 386 aa5.97□□□□□ -1.45
NUP88-209ENST00000574855 NOS3P29474 1203 aa5.97□□□□□ -1.45
NUP88-209ENST00000574855 TMC1Q8TDI8 760 aa5.97□□□□□ -1.45
NUP88-209ENST00000574855 BSNDQ8WZ55 320 aa5.97□□□□□ -1.45
NUP88-209ENST00000574855 WNT8BQ93098 351 aa5.97□□□□□ -1.45
NUP88-209ENST00000574855 TP53INP1Q96A56 240 aa5.97□□□□□ -1.45
NUP88-209ENST00000574855 ZKSCAN3Q9BRR0 538 aa5.97□□□□□ -1.45
NUP88-209ENST00000574855 SEC31BQ9NQW1 1179 aa5.97□□□□□ -1.45
NUP88-209ENST00000574855 GNEQ9Y223 722 aaKnown RBP5.97□□□□□ -1.45
NUP88-209ENST00000574855 SOWAHDA6NJG2 315 aa5.96□□□□□ -1.46
NUP88-209ENST00000574855 F8W735 103 aaPredicted RBP5.96□□□□□ -1.46
NUP88-209ENST00000574855 H3BRJ5 948 aa5.96□□□□□ -1.46
NUP88-209ENST00000574855 ARL4DP49703 201 aa5.96□□□□□ -1.46
NUP88-209ENST00000574855 PIP4K2BP78356 416 aa5.96□□□□□ -1.46
NUP88-209ENST00000574855 HHIPQ96QV1 700 aa5.96□□□□□ -1.46
NUP88-209ENST00000574855 SSBP4Q9BWG4 385 aaPredicted RBP5.96□□□□□ -1.46
NUP88-209ENST00000574855 CARD10Q9BWT7 1032 aa5.96□□□□□ -1.46
NUP88-209ENST00000574855 OSGEPQ9NPF4 335 aa5.96□□□□□ -1.46
NUP88-209ENST00000574855 DYRK3O43781 588 aa5.95□□□□□ -1.46
NUP88-209ENST00000574855 ALX3O95076 343 aa5.95□□□□□ -1.46
NUP88-209ENST00000574855 POLR3DP05423 398 aaPredicted RBP5.95□□□□□ -1.46
NUP88-209ENST00000574855 PEAR1Q5VY43 1037 aaPredicted RBP5.95□□□□□ -1.46
NUP88-209ENST00000574855 GALNT12Q8IXK2 581 aa5.95□□□□□ -1.46
NUP88-209ENST00000574855 ASAP3Q8TDY4 903 aa5.95□□□□□ -1.46
NUP88-209ENST00000574855 FAM129BQ96TA1 746 aa5.95□□□□□ -1.46
NUP88-209ENST00000574855 SOX13Q9UN79 622 aa5.95□□□□□ -1.46
NUP88-209ENST00000574855 IKBKEQ14164 716 aa5.94□□□□□ -1.46
NUP88-209ENST00000574855 DUOXA2Q1HG44 320 aa5.94□□□□□ -1.46
NUP88-209ENST00000574855 FOXD4L6Q3SYB3 417 aaPredicted RBP5.94□□□□□ -1.46
NUP88-209ENST00000574855 FOXD4L3Q6VB84 417 aaPredicted RBP5.94□□□□□ -1.46
NUP88-209ENST00000574855 DZIP1LQ8IYY4 767 aaKnown RBP5.94□□□□□ -1.46
NUP88-209ENST00000574855 SLC7A3Q8WY07 619 aa5.94□□□□□ -1.46
NUP88-209ENST00000574855 KLHDC7BQ96G42 594 aa5.94□□□□□ -1.46
NUP88-209ENST00000574855 MEGF10Q96KG7 1140 aa5.94□□□□□ -1.46
NUP88-209ENST00000574855 BHLHE41Q9C0J9 482 aaPredicted RBP5.94□□□□□ -1.46
NUP88-209ENST00000574855 LATS2Q9NRM7 1088 aa5.94□□□□□ -1.46
NUP88-209ENST00000574855 BIN2Q9UBW5 565 aaPredicted RBP5.94□□□□□ -1.46
NUP88-209ENST00000574855 TM4SF5O14894 197 aa5.93□□□□□ -1.46
NUP88-209ENST00000574855 CPNE3O75131 537 aaKnown RBP5.93□□□□□ -1.46
NUP88-209ENST00000574855 GLB1P16278 677 aa5.93□□□□□ -1.46
NUP88-209ENST00000574855 ACAD11Q709F0 780 aa5.93□□□□□ -1.46
NUP88-209ENST00000574855 ZC3HAV1Q7Z2W4 902 aaKnown RBP5.93□□□□□ -1.46
NUP88-209ENST00000574855 AGGF1Q8N302 714 aaeCLIP5.93□□□□□ -1.46
NUP88-209ENST00000574855 DMRTB1Q96MA1 342 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms