RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 PTPN12Q05209 780 aaKnown RBP13.73□□□□□ -0.21
CHD3-216ENST00000573936 DEFB115Q30KQ5 88 aa13.73□□□□□ -0.21
CHD3-216ENST00000573936 RIPOR2Q9Y4F9 1068 aa13.73□□□□□ -0.21
CHD3-216ENST00000573936 ZNF804BA4D1E1 1349 aa13.72□□□□□ -0.21
CHD3-216ENST00000573936 RIMBP2O15034 1052 aa13.72□□□□□ -0.21
CHD3-216ENST00000573936 SRGAP3O43295 1099 aa13.72□□□□□ -0.21
CHD3-216ENST00000573936 CENPBP07199 599 aaPredicted RBP13.72□□□□□ -0.21
CHD3-216ENST00000573936 EPHX2P34913 555 aa13.72□□□□□ -0.21
CHD3-216ENST00000573936 LBX1P52954 281 aa13.72□□□□□ -0.21
CHD3-216ENST00000573936 ZNRF3Q9ULT6 936 aa13.72□□□□□ -0.21
CHD3-216ENST00000573936 ABT1Q9ULW3 272 aaKnown RBP13.72□□□□□ -0.21
CHD3-216ENST00000573936 EYA2O00167 538 aa13.71□□□□□ -0.21
CHD3-216ENST00000573936 CIAO1O76071 339 aa13.71□□□□□ -0.21
CHD3-216ENST00000573936 ITGBL1O95965 494 aaPredicted RBP13.71□□□□□ -0.21
CHD3-216ENST00000573936 ATP8B2P98198 1209 aa13.71□□□□□ -0.21
CHD3-216ENST00000573936 MAP2K1Q02750 393 aaPredicted RBP13.71□□□□□ -0.21
CHD3-216ENST00000573936 UBE4AQ14139 1066 aa13.71□□□□□ -0.21
CHD3-216ENST00000573936 METTL24Q5JXM2 366 aa13.71□□□□□ -0.21
CHD3-216ENST00000573936 CNTROBQ8N137 903 aa13.71□□□□□ -0.21
CHD3-216ENST00000573936 BEGAINQ9BUH8 593 aa13.71□□□□□ -0.21
CHD3-216ENST00000573936 PUS3Q9BZE2 481 aaKnown RBP13.71□□□□□ -0.21
CHD3-216ENST00000573936 COPRSQ9NQ92 184 aa13.71□□□□□ -0.21
CHD3-216ENST00000573936 DUOX1Q9NRD9 1551 aa13.71□□□□□ -0.22
CHD3-216ENST00000573936 MED23Q9ULK4 1368 aa13.71□□□□□ -0.22
CHD3-216ENST00000573936 LTBP1Q14766 1721 aa13.7□□□□□ -0.22
CHD3-216ENST00000573936 TAF5LO75529 589 aa13.7□□□□□ -0.22
CHD3-216ENST00000573936 TNIP1Q15025 636 aa13.7□□□□□ -0.22
CHD3-216ENST00000573936 LRRC24Q50LG9 513 aa13.7□□□□□ -0.22
CHD3-216ENST00000573936 C20orf194Q5TEA3 1177 aa13.7□□□□□ -0.22
CHD3-216ENST00000573936 C15orf52Q6ZUT6 534 aaKnown RBP13.7□□□□□ -0.22
CHD3-216ENST00000573936 HELBQ8NG08 1087 aaPredicted RBP13.7□□□□□ -0.22
CHD3-216ENST00000573936 KLHDC4Q8TBB5 520 aa13.7□□□□□ -0.22
CHD3-216ENST00000573936 WBP1LQ9NX94 342 aa13.7□□□□□ -0.22
CHD3-216ENST00000573936 GJA3Q9Y6H8 435 aa13.7□□□□□ -0.22
CHD3-216ENST00000573936 ECE2O60344 883 aa13.69□□□□□ -0.22
CHD3-216ENST00000573936 PDE8BO95263 885 aa13.69□□□□□ -0.22
CHD3-216ENST00000573936 IL15P40933 162 aaPredicted RBP13.69□□□□□ -0.22
CHD3-216ENST00000573936 MAP1SQ66K74 1059 aaPredicted RBP13.69□□□□□ -0.22
CHD3-216ENST00000573936 PAXIP1Q6ZW49 1069 aaPredicted RBP13.69□□□□□ -0.22
CHD3-216ENST00000573936 PODNQ7Z5L7 613 aa13.69□□□□□ -0.22
CHD3-216ENST00000573936 GPC2Q8N158 579 aa13.69□□□□□ -0.22
CHD3-216ENST00000573936 COA1Q9GZY4 146 aa13.69□□□□□ -0.22
CHD3-216ENST00000573936 ZBTB40Q9NUA8 1239 aa13.69□□□□□ -0.22
CHD3-216ENST00000573936 PCDH10Q9P2E7 1040 aa13.69□□□□□ -0.22
CHD3-216ENST00000573936 CEP126Q9P2H0 1117 aa13.69□□□□□ -0.22
CHD3-216ENST00000573936 SPEF2Q9C093 1822 aa13.69□□□□□ -0.22
CHD3-216ENST00000573936 WDR33Q9C0J8 1336 aaKnown RBP13.68□□□□□ -0.22
CHD3-216ENST00000573936 PNMA6EA0A0J9YXQ4 647 aa13.68□□□□□ -0.22
CHD3-216ENST00000573936 LMOD1P29536 600 aaPredicted RBP13.68□□□□□ -0.22
CHD3-216ENST00000573936 G3BP1Q13283 466 aaKnown RBP eCLIP13.68□□□□□ -0.22
CHD3-216ENST00000573936 POLA2Q14181 598 aa13.68□□□□□ -0.22
CHD3-216ENST00000573936 DOK7Q18PE1 504 aa13.68□□□□□ -0.22
CHD3-216ENST00000573936 CIAPIN1Q6FI81 312 aa13.68□□□□□ -0.22
CHD3-216ENST00000573936 RPAP2Q8IXW5 612 aaPredicted RBP13.68□□□□□ -0.22
CHD3-216ENST00000573936 SSH3Q8TE77 659 aa13.68□□□□□ -0.22
CHD3-216ENST00000573936 GPR101Q96P66 508 aaPredicted RBP13.68□□□□□ -0.22
CHD3-216ENST00000573936 SIL1Q9H173 461 aa13.68□□□□□ -0.22
CHD3-216ENST00000573936 C1orf115Q9H7X2 142 aa13.68□□□□□ -0.22
CHD3-216ENST00000573936 DBNDD1Q9H9R9 158 aa13.68□□□□□ -0.22
CHD3-216ENST00000573936 PA2G4Q9UQ80 394 aaKnown RBP13.68□□□□□ -0.22
CHD3-216ENST00000573936 RASSF10A6NK89 507 aa13.67□□□□□ -0.22
CHD3-216ENST00000573936 CXCL9Q07325 125 aa13.67□□□□□ -0.22
CHD3-216ENST00000573936 CEP85Q6P2H3 762 aa13.67□□□□□ -0.22
CHD3-216ENST00000573936 ATG9AQ7Z3C6 839 aa13.67□□□□□ -0.22
CHD3-216ENST00000573936 ABHD8Q96I13 439 aa13.67□□□□□ -0.22
CHD3-216ENST00000573936 YDJCA8MPS7 323 aa13.66□□□□□ -0.22
CHD3-216ENST00000573936 HMMRO75330 724 aa13.66□□□□□ -0.22
CHD3-216ENST00000573936 RAD17O75943 681 aa13.66□□□□□ -0.22
CHD3-216ENST00000573936 IFIT1P09914 478 aaKnown RBP13.66□□□□□ -0.22
CHD3-216ENST00000573936 ECE1P42892 770 aa13.66□□□□□ -0.22
CHD3-216ENST00000573936 GRM1Q13255 1194 aa13.66□□□□□ -0.22
CHD3-216ENST00000573936 PUM3Q15397 648 aaKnown RBP13.66□□□□□ -0.22
CHD3-216ENST00000573936 ZNF804AQ7Z570 1209 aa13.66□□□□□ -0.22
CHD3-216ENST00000573936 VGLL2Q8N8G2 317 aa13.66□□□□□ -0.22
CHD3-216ENST00000573936 AKAP2Q9Y2D5 859 aa13.66□□□□□ -0.22
CHD3-216ENST00000573936 WTIPA6NIX2 430 aaPredicted RBP13.65□□□□□ -0.22
CHD3-216ENST00000573936 SNAP23O00161 211 aa13.65□□□□□ -0.22
CHD3-216ENST00000573936 SLC5A1P13866 664 aa13.65□□□□□ -0.22
CHD3-216ENST00000573936 SCNN1DP51172 638 aa13.65□□□□□ -0.22
CHD3-216ENST00000573936 CAVIN4Q5BKX8 364 aa13.65□□□□□ -0.22
CHD3-216ENST00000573936 LPIN2Q92539 896 aa13.65□□□□□ -0.22
CHD3-216ENST00000573936 CD209Q9NNX6 404 aa13.65□□□□□ -0.22
CHD3-216ENST00000573936 IRS2Q9Y4H2 1338 aa13.64□□□□□ -0.23
CHD3-216ENST00000573936 USP17L3A6NCW0 530 aa13.64□□□□□ -0.23
CHD3-216ENST00000573936 USP17L4A6NCW7 530 aa13.64□□□□□ -0.23
CHD3-216ENST00000573936 CCDC85CA6NKD9 419 aa13.64□□□□□ -0.23
CHD3-216ENST00000573936 SURF6O75683 361 aaKnown RBP13.64□□□□□ -0.23
CHD3-216ENST00000573936 VIL1P09327 827 aaKnown RBP13.64□□□□□ -0.23
CHD3-216ENST00000573936 HSPA8P11142 646 aaKnown RBP13.64□□□□□ -0.23
CHD3-216ENST00000573936 FGFR2P21802 821 aa13.64□□□□□ -0.23
CHD3-216ENST00000573936 RPS12P25398 132 aaKnown RBP13.64□□□□□ -0.23
CHD3-216ENST00000573936 HIBADHP31937 336 aaKnown RBP13.64□□□□□ -0.23
CHD3-216ENST00000573936 EPS15P42566 896 aa13.64□□□□□ -0.23
CHD3-216ENST00000573936 OS9Q13438 667 aaPredicted RBP13.64□□□□□ -0.23
CHD3-216ENST00000573936 AAMPQ13685 434 aa13.64□□□□□ -0.23
CHD3-216ENST00000573936 HSP90AB4PQ58FF6 505 aa13.64□□□□□ -0.23
CHD3-216ENST00000573936 USP17L1Q7RTZ2 530 aa13.64□□□□□ -0.23
CHD3-216ENST00000573936 TXNRD3Q86VQ6 643 aa13.64□□□□□ -0.23
CHD3-216ENST00000573936 VPS37DQ86XT2 251 aa13.64□□□□□ -0.23
CHD3-216ENST00000573936 NOP58Q9Y2X3 529 aaKnown RBP13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms